Wall clock time and date at job start Fri Apr 10 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35347 * 116.99911 * 2 1 4 4 C 1.38990 * 126.41082 * 93.42779 * 3 2 1 5 5 C 1.46924 * 126.49404 * 359.93416 * 4 3 2 6 6 O 1.21661 * 120.00111 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00006 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00053 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47146 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47086 * 175.22033 * 9 8 7 11 11 C 1.52999 * 115.55007 * 278.38209 * 10 9 8 12 12 N 1.46502 * 109.47713 * 294.77898 * 11 10 9 13 13 C 1.36928 * 120.00432 * 182.76312 * 12 11 10 14 14 H 1.08006 * 119.99821 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00527 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99592 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00487 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47196 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47394 * 120.00005 * 17 15 13 20 20 H 1.48500 * 109.47347 * 240.00322 * 17 15 13 21 21 C 1.53001 * 117.49979 * 132.67980 * 10 9 8 22 22 C 1.52991 * 117.50045 * 64.05631 * 10 9 8 23 23 C 1.41466 * 107.01000 * 179.97438 * 4 3 2 24 24 N 1.30317 * 108.13338 * 359.97438 * 23 4 3 25 25 N 1.34668 * 126.40264 * 273.10496 * 3 2 1 26 26 C 1.46501 * 125.73880 * 0.02562 * 25 3 2 27 27 H 1.08996 * 109.47752 * 175.35179 * 1 2 3 28 28 H 1.09005 * 109.47078 * 295.35548 * 1 2 3 29 29 H 1.09000 * 109.47026 * 55.34600 * 1 2 3 30 30 H 0.97004 * 119.99998 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47164 * 299.99995 * 8 7 5 32 32 H 1.08997 * 109.47282 * 60.00404 * 8 7 5 33 33 H 1.09002 * 109.47328 * 295.22275 * 9 8 7 34 34 H 1.09000 * 109.47241 * 55.22138 * 9 8 7 35 35 H 1.09010 * 109.46804 * 54.77643 * 11 10 9 36 36 H 1.08998 * 109.47340 * 174.76942 * 11 10 9 37 37 H 0.97005 * 119.99651 * 2.76659 * 12 11 10 38 38 H 0.97001 * 120.00059 * 180.02562 * 16 15 13 39 39 H 1.09004 * 117.49822 * 0.02562 * 21 10 9 40 40 H 1.08998 * 117.49759 * 145.01964 * 21 10 9 41 41 H 1.09004 * 117.50016 * 214.98327 * 22 10 9 42 42 H 1.09000 * 117.49790 * 0.02562 * 22 10 9 43 43 H 1.07994 * 125.93124 * 179.97438 * 23 4 3 44 44 H 1.08998 * 109.47246 * 94.31779 * 26 25 3 45 45 H 1.09003 * 109.46502 * 214.31533 * 26 25 3 46 46 H 1.09001 * 109.47241 * 334.31282 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4776 1.9107 1.1166 5 6 2.3551 1.4884 2.5185 6 8 1.8305 0.4247 2.7898 7 7 2.8239 2.2793 3.5039 8 6 2.7023 1.8579 4.9017 9 6 3.3091 2.9279 5.8116 10 6 3.0764 2.5452 7.2745 11 6 1.6965 2.8933 7.8362 12 7 1.5340 4.3490 7.8654 13 6 0.3933 4.9004 8.3847 14 1 -0.3866 4.2621 8.7732 15 6 0.2395 6.2797 8.4128 16 7 1.1901 7.0575 7.9398 17 14 -1.3169 7.0318 9.1206 18 1 -2.2237 5.9502 9.5823 19 1 -0.9663 7.9068 10.2682 20 1 -1.9978 7.8364 8.0746 21 6 4.2705 2.6352 8.2269 22 6 3.7453 1.2676 7.7855 23 6 3.0588 3.1121 0.6475 24 7 2.9771 3.1214 -0.6531 25 7 2.3540 1.9447 -1.0823 26 6 2.0822 1.5789 -2.4746 27 1 -0.3634 -1.0242 -0.0833 28 1 -0.3633 0.4401 0.9287 29 1 -0.3633 0.5844 -0.8454 30 1 3.2426 3.1272 3.2876 31 1 1.6497 1.7234 5.1504 32 1 3.2327 0.9165 5.0449 33 1 4.3798 3.0021 5.6213 34 1 2.8365 3.8888 5.6078 35 1 0.9252 2.4543 7.2032 36 1 1.6053 2.4972 8.8476 37 1 2.2345 4.9222 7.5167 38 1 1.0829 8.0214 7.9597 39 1 5.2218 2.9676 7.8113 40 1 4.0730 2.9426 9.2538 41 1 3.2025 0.6753 8.5221 42 1 4.3516 0.7000 7.0796 43 1 3.4946 3.8869 1.2607 44 1 1.1356 2.0192 -2.7879 45 1 2.8846 1.9516 -3.1113 46 1 2.0244 0.4939 -2.5606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167888251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:10 Heat of formation + Delta-G solvation = 18.032067 kcal Electronic energy + Delta-G solvation = -26867.038324 eV Core-core repulsion = 22987.311321 eV Total energy + Delta-G solvation = -3879.727002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65184 -40.35787 -39.38875 -39.22772 -36.04117 -35.64481 -34.42624 -32.75211 -31.60972 -30.62926 -28.45342 -27.81018 -27.64821 -24.95624 -24.57823 -23.56646 -22.84695 -22.02313 -21.38010 -20.05822 -19.32890 -18.92265 -17.88278 -17.52839 -17.12280 -16.81175 -16.46819 -16.44304 -15.98462 -15.70534 -15.63391 -15.52495 -15.09194 -14.72923 -14.67592 -14.60409 -14.11951 -13.87125 -13.60590 -13.57864 -13.14001 -12.98292 -12.92309 -12.80548 -12.52449 -12.43810 -12.23572 -12.08117 -11.91217 -11.76923 -11.36775 -11.10681 -10.96755 -10.84955 -10.54017 -10.52495 -10.14027 -9.69361 -8.94251 -7.92623 -5.19660 0.09630 1.04065 1.06005 1.47828 1.47881 1.58003 2.24278 2.30978 2.56025 2.58331 2.94207 3.36232 3.40573 3.84739 3.88867 3.90669 3.98850 4.02561 4.13207 4.14430 4.25420 4.29957 4.32853 4.36046 4.47683 4.52113 4.57597 4.60852 4.64997 4.73626 4.87861 4.96221 5.02637 5.03496 5.11914 5.24372 5.30533 5.32625 5.37955 5.42502 5.51165 5.52455 6.21897 6.30134 6.35380 6.64057 7.30931 7.37304 8.13788 8.40003 9.30786 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.002727 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.340121 B =10265.346425 C =11290.654041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.314 3.686 4 C -0.322 4.322 5 C 0.591 3.409 6 O -0.584 6.584 7 N -0.714 5.714 8 C 0.138 3.862 9 C -0.078 4.078 10 C -0.138 4.138 11 C 0.188 3.812 12 N -0.735 5.735 13 C -0.243 4.243 14 H 0.069 0.931 15 C -0.072 4.072 16 N -0.964 5.964 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.292 1.292 20 H -0.293 1.293 21 C -0.163 4.163 22 C -0.151 4.151 23 C 0.100 3.900 24 N -0.293 5.293 25 N -0.366 5.366 26 C 0.082 3.918 27 H 0.129 0.871 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.412 0.588 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.225 0.775 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 -13.342 -20.426 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.139 3.861 4 C -0.338 4.338 5 C 0.379 3.621 6 O -0.465 6.465 7 N -0.365 5.365 8 C 0.014 3.986 9 C -0.115 4.115 10 C -0.139 4.139 11 C 0.061 3.939 12 N -0.378 5.378 13 C -0.375 4.375 14 H 0.087 0.913 15 C -0.265 4.265 16 N -0.615 5.615 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.200 4.200 22 C -0.189 4.189 23 C -0.087 4.087 24 N -0.116 5.116 25 N -0.155 5.155 26 C -0.057 4.057 27 H 0.147 0.853 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.241 0.759 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.342 -13.766 -21.332 25.944 hybrid contribution -0.962 0.925 1.098 1.728 sum 4.379 -12.842 -20.234 24.362 Atomic orbital electron populations 1.23328 0.75035 1.05973 1.01442 1.85966 1.22939 1.20285 1.93019 1.19462 0.94837 0.84833 0.86984 1.20086 1.20608 1.00476 0.92659 1.17244 0.77259 0.83231 0.84330 1.90762 1.46376 1.24632 1.84722 1.45660 1.61362 1.23570 1.05899 1.21146 1.00332 0.97919 0.79159 1.21117 1.01686 0.97813 0.90915 1.21394 0.93720 1.04138 0.94652 1.20231 0.93189 0.84281 0.96159 1.42434 1.19937 1.01587 1.73793 1.19624 0.96218 0.90520 1.31179 0.91286 1.25472 1.01195 0.96594 1.03197 1.69806 1.34881 1.03210 1.53635 0.85141 0.79523 0.78202 0.77309 1.19491 1.21954 1.21974 1.22997 0.97307 1.00634 0.99099 1.23058 1.02642 0.89932 1.03247 1.24395 0.96079 0.96283 0.91911 1.77205 1.19474 1.01186 1.13722 1.49280 1.44712 1.13712 1.07823 1.22396 1.04697 1.03384 0.75241 0.85317 0.94147 0.91156 0.75153 0.93868 0.91084 0.89064 0.92041 0.96930 0.96612 0.79013 0.94018 0.87336 0.90310 0.88674 0.86771 0.75882 0.88475 0.87260 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.13 113.37 1.26 1.87 16 2 O -0.31 -7.32 9.74 -79.44 -0.77 -8.10 16 3 C 0.31 7.53 6.98 84.44 0.59 8.12 16 4 C -0.32 -8.25 6.15 -20.03 -0.12 -8.38 16 5 C 0.59 17.75 7.80 86.52 0.67 18.42 16 6 O -0.58 -21.75 16.38 2.71 0.04 -21.71 16 7 N -0.71 -18.31 5.55 -466.86 -2.59 -20.90 16 8 C 0.14 3.89 5.50 86.38 0.47 4.37 16 9 C -0.08 -2.17 5.22 30.59 0.16 -2.01 16 10 C -0.14 -4.32 1.54 -52.18 -0.08 -4.40 16 11 C 0.19 7.73 6.10 86.38 0.53 8.26 16 12 N -0.73 -37.42 5.38 -343.44 -1.85 -39.27 16 13 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 14 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 16 N -0.96 -58.57 13.06 21.65 0.28 -58.28 16 17 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 C -0.16 -4.58 9.90 30.59 0.30 -4.28 16 22 C -0.15 -3.76 9.55 30.59 0.29 -3.47 16 23 C 0.10 2.03 11.50 85.71 0.99 3.02 16 24 N -0.29 -6.28 12.47 -56.23 -0.70 -6.98 16 25 N -0.37 -7.10 3.99 -479.80 -1.91 -9.01 16 26 C 0.08 0.77 11.41 127.77 1.46 2.22 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.41 8.15 7.42 -92.71 -0.69 7.47 16 31 H 0.04 1.47 7.75 -2.39 -0.02 1.45 16 32 H 0.07 1.92 7.74 -2.39 -0.02 1.91 16 33 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 34 H 0.06 2.04 7.46 -2.39 -0.02 2.03 16 35 H 0.01 0.55 7.75 -2.38 -0.02 0.53 16 36 H 0.02 0.67 8.09 -2.39 -0.02 0.65 16 37 H 0.38 20.10 7.18 -92.70 -0.67 19.44 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.11 2.61 8.07 -2.38 -0.02 2.59 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.11 2.34 7.92 -2.39 -0.02 2.32 16 43 H 0.22 2.86 7.50 -2.91 -0.02 2.84 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 0.71 8.03 -2.39 -0.02 0.69 16 Total: -1.00 -77.93 391.67 2.00 -75.93 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.35 Total: 32.60 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.83 Total: 7.09 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -6.77 Total: -134.45 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.73 Total: -29.80 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -77.93 2.00 -75.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167888251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.963 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds