Wall clock time and date at job start Fri Apr 10 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.37017 * 125.64837 * 2 1 4 4 C 1.35143 * 107.87176 * 180.14207 * 3 2 1 5 5 C 1.46663 * 126.37497 * 179.84568 * 4 3 2 6 6 O 1.21704 * 119.99660 * 179.68828 * 5 4 3 7 7 N 1.34773 * 119.99944 * 359.68538 * 5 4 3 8 8 C 1.46502 * 119.99951 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47465 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47512 * 175.45402 * 9 8 7 11 11 C 1.52995 * 115.55215 * 279.32745 * 10 9 8 12 12 N 1.46504 * 109.46950 * 294.94934 * 11 10 9 13 13 C 1.36940 * 119.99852 * 174.36754 * 12 11 10 14 14 H 1.07999 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99589 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00571 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99628 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46864 * 60.00440 * 17 15 13 19 19 H 1.48500 * 109.46921 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47243 * 300.00520 * 17 15 13 21 21 C 1.52998 * 117.49739 * 133.61500 * 10 9 8 22 22 C 1.53000 * 117.49519 * 64.99305 * 10 9 8 23 23 N 1.39834 * 107.24619 * 359.57945 * 4 3 2 24 24 C 1.46501 * 126.18387 * 180.26537 * 23 4 3 25 25 C 1.34614 * 125.65077 * 179.66685 * 2 1 3 26 26 O 1.21733 * 125.72812 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47342 * 270.33363 * 1 2 3 28 28 H 1.09000 * 109.46620 * 30.33554 * 1 2 3 29 29 H 1.09000 * 109.46916 * 150.32929 * 1 2 3 30 30 H 1.07996 * 126.06564 * 359.97438 * 3 2 1 31 31 H 0.96996 * 119.99973 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47075 * 59.99739 * 8 7 5 33 33 H 1.09004 * 109.46892 * 300.00096 * 8 7 5 34 34 H 1.09002 * 109.46936 * 295.46043 * 9 8 7 35 35 H 1.09003 * 109.47242 * 55.45216 * 9 8 7 36 36 H 1.09003 * 109.47064 * 54.94449 * 11 10 9 37 37 H 1.08997 * 109.47420 * 174.94565 * 11 10 9 38 38 H 0.97000 * 120.00024 * 354.37233 * 12 11 10 39 39 H 0.97000 * 120.00277 * 179.97438 * 16 15 13 40 40 H 1.09008 * 117.49987 * 0.02562 * 21 10 9 41 41 H 1.08994 * 117.49712 * 145.02326 * 21 10 9 42 42 H 1.08991 * 117.50030 * 214.97767 * 22 10 9 43 43 H 1.09005 * 117.50091 * 0.02562 * 22 10 9 44 44 H 1.08992 * 109.47583 * 90.00113 * 24 23 4 45 45 H 1.09003 * 109.47066 * 210.00562 * 24 23 4 46 46 H 1.09004 * 109.47074 * 329.99573 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0032 5 6 4.7393 1.5597 -0.0075 6 8 5.8498 1.0617 -0.0044 7 7 4.6020 2.9004 -0.0150 8 6 5.7895 3.7584 -0.0199 9 6 5.3582 5.2263 -0.0275 10 6 6.5940 6.1217 0.0817 11 6 7.1547 6.3032 1.4936 12 7 6.1762 7.0146 2.3199 13 6 6.4093 7.1914 3.6576 14 1 7.3146 6.8067 4.1035 15 6 5.4824 7.8660 4.4404 16 7 4.3793 8.3352 3.8969 17 14 5.8007 8.1078 6.2651 18 1 7.0560 8.8792 6.4507 19 1 4.6675 8.8523 6.8708 20 1 5.9313 6.7837 6.9246 21 6 6.6917 7.3108 -0.8760 22 6 7.5931 6.0910 -1.0766 23 7 3.5376 -0.6974 0.0046 24 6 4.7120 -1.5732 0.0100 25 6 2.2497 -1.0938 0.0064 26 8 1.8610 -2.2474 0.0126 27 1 -0.3634 0.0060 1.0276 28 1 -0.3632 0.8870 -0.5190 29 1 -0.3633 -0.8929 -0.5087 30 1 1.9248 2.1388 -0.0004 31 1 3.7169 3.2973 -0.0172 32 1 6.3849 3.5497 -0.9088 33 1 6.3850 3.5597 0.8712 34 1 4.8316 5.4454 -0.9564 35 1 4.6968 5.4151 0.8182 36 1 7.3585 5.3262 1.9320 37 1 8.0783 6.8800 1.4464 38 1 5.3633 7.3604 1.9193 39 1 3.7315 8.8063 4.4440 40 1 5.8752 7.4556 -1.5836 41 1 7.1553 8.2229 -0.5002 42 1 8.6498 6.2005 -0.8329 43 1 7.3698 5.4332 -1.9167 44 1 5.0029 -1.7847 1.0388 45 1 4.4715 -2.5067 -0.4989 46 1 5.5355 -1.0799 -0.5064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168372684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:15 Heat of formation + Delta-G solvation = 20.543165 kcal Electronic energy + Delta-G solvation = -26893.925746 eV Core-core repulsion = 23014.307633 eV Total energy + Delta-G solvation = -3879.618113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69775 -39.63907 -38.28557 -37.01390 -35.74707 -34.87775 -33.94292 -31.37936 -30.78742 -29.88654 -28.07221 -26.37946 -25.97237 -24.14260 -22.95193 -22.72758 -21.78933 -20.91746 -20.64897 -18.82144 -18.00651 -17.10962 -17.05284 -16.77504 -16.14724 -15.61399 -15.50566 -15.24572 -15.01401 -14.59831 -14.45228 -14.35573 -14.12779 -13.78392 -13.44081 -13.14395 -13.12849 -12.92839 -12.72289 -12.45896 -12.28156 -11.96852 -11.80009 -11.49491 -11.16901 -10.99325 -10.85339 -10.82846 -10.64202 -10.24125 -10.19262 -10.05456 -9.93795 -9.68585 -9.36521 -9.17364 -8.86940 -8.07069 -6.92596 -5.78490 -3.06225 1.07730 1.87885 2.57976 2.64526 3.08135 3.37702 3.43049 3.47592 3.48345 4.01703 4.30420 4.59597 4.62989 4.66649 4.78508 4.89979 4.96504 4.97783 5.05796 5.11305 5.18565 5.25831 5.26475 5.47656 5.52845 5.55721 5.62444 5.68277 5.71770 5.88132 6.03317 6.09308 6.14037 6.19629 6.29473 6.37847 6.39930 6.43265 6.50649 6.73131 6.81544 6.90838 7.33557 7.68572 7.92851 8.04286 8.40870 9.52631 10.10555 10.46346 11.44245 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002808 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.385652 B = 9967.633663 C =11198.079813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.524 5.524 3 C 0.054 3.946 4 C -0.033 4.033 5 C 0.591 3.409 6 O -0.536 6.536 7 N -0.713 5.713 8 C 0.127 3.873 9 C -0.092 4.092 10 C -0.119 4.119 11 C 0.187 3.813 12 N -0.727 5.727 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.164 4.164 22 C -0.178 4.178 23 N -0.510 5.510 24 C 0.100 3.900 25 C 0.648 3.352 26 O -0.567 6.567 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.192 0.808 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.017 0.983 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -12.523 -13.663 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.241 5.241 3 C -0.076 4.076 4 C -0.142 4.142 5 C 0.376 3.624 6 O -0.414 6.414 7 N -0.364 5.364 8 C 0.005 3.995 9 C -0.129 4.129 10 C -0.120 4.120 11 C 0.060 3.940 12 N -0.371 5.371 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.201 4.201 22 C -0.215 4.215 23 N -0.230 5.230 24 C -0.041 4.041 25 C 0.350 3.650 26 O -0.445 6.445 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.209 0.791 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.658 -13.792 -13.485 19.843 hybrid contribution -0.612 0.659 1.010 1.352 sum -5.271 -13.133 -12.475 18.865 Atomic orbital electron populations 1.21882 0.74447 1.04661 1.03704 1.44955 1.08049 1.06053 1.65008 1.22101 0.87883 0.93554 1.04017 1.19725 0.94019 0.84192 1.16267 1.16672 0.86753 0.81927 0.77008 1.90820 1.25982 1.74214 1.50405 1.45714 1.10997 1.04936 1.74785 1.21437 0.86429 0.88802 1.02870 1.21264 0.97090 0.91649 1.02939 1.21553 0.97362 1.00014 0.93088 1.20185 0.92137 0.95321 0.86383 1.42278 1.22283 1.66754 1.05812 1.19192 1.03284 1.29597 0.84875 0.91329 1.24697 0.96931 1.01212 0.98019 1.69641 1.10513 1.43127 1.34998 0.86295 0.76950 0.77698 0.85418 1.21315 1.21715 1.21296 1.22966 1.02122 0.93111 1.01947 1.22981 0.96866 1.01785 0.99881 1.45190 1.07026 1.04919 1.65837 1.21892 0.85253 0.93399 1.03564 1.16129 0.80829 0.84893 0.83119 1.91037 1.76550 1.16309 1.60626 0.90736 0.89310 0.89355 0.79061 0.76444 0.91350 0.90544 0.91811 0.89298 0.95528 0.96567 0.78166 0.93543 0.89299 0.88604 0.88931 0.89215 0.91269 0.90080 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.01 59.85 0.66 1.21 16 2 N -0.52 -5.02 3.12 -128.78 -0.40 -5.42 16 3 C 0.05 0.44 10.91 -16.34 -0.18 0.27 16 4 C -0.03 -0.37 6.88 -81.91 -0.56 -0.93 16 5 C 0.59 7.32 7.79 -12.86 -0.10 7.22 16 6 O -0.54 -8.33 14.83 5.19 0.08 -8.25 16 7 N -0.71 -7.48 5.54 -61.62 -0.34 -7.82 16 8 C 0.13 1.55 5.51 -4.04 -0.02 1.53 16 9 C -0.09 -1.16 5.24 -26.73 -0.14 -1.30 16 10 C -0.12 -1.75 1.52 -154.51 -0.23 -1.98 16 11 C 0.19 3.60 6.10 -4.04 -0.02 3.57 16 12 N -0.73 -17.46 5.30 -59.91 -0.32 -17.78 16 13 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.16 -2.24 9.90 -26.73 -0.26 -2.50 16 22 C -0.18 -2.18 9.57 -26.73 -0.26 -2.43 16 23 N -0.51 -6.38 3.21 -124.83 -0.40 -6.78 16 24 C 0.10 1.10 10.58 59.85 0.63 1.73 16 25 C 0.65 8.60 8.49 -87.08 -0.74 7.86 16 26 O -0.57 -9.24 17.59 5.16 0.09 -9.15 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 30 H 0.19 0.75 7.37 -52.49 -0.39 0.36 16 31 H 0.40 3.04 7.32 -40.82 -0.30 2.74 16 32 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 33 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 34 H 0.06 0.68 7.94 -51.93 -0.41 0.26 16 35 H 0.09 1.33 7.64 -51.93 -0.40 0.94 16 36 H 0.03 0.53 7.69 -51.93 -0.40 0.13 16 37 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.38 9.63 7.46 -40.82 -0.30 9.33 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.09 1.07 8.08 -51.92 -0.42 0.65 16 41 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.95 7.98 -51.93 -0.41 0.54 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 46 H 0.10 1.12 6.45 -51.93 -0.33 0.78 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -35.70 386.97 -8.33 -44.03 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.09 Total: 7.71 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.48 Total: 7.15 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.74 Total: -64.33 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.17 Total: -17.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.70 -8.33 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168372684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.570 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds