Wall clock time and date at job start Fri Apr 10 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.37017 * 125.64837 * 2 1 4 4 C 1.35143 * 107.87176 * 180.14207 * 3 2 1 5 5 C 1.46663 * 126.37497 * 179.84568 * 4 3 2 6 6 O 1.21704 * 119.99660 * 179.68828 * 5 4 3 7 7 N 1.34773 * 119.99944 * 359.68538 * 5 4 3 8 8 C 1.46502 * 119.99951 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47465 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47512 * 175.45402 * 9 8 7 11 11 C 1.52995 * 115.55215 * 279.32745 * 10 9 8 12 12 N 1.46504 * 109.46950 * 294.94934 * 11 10 9 13 13 C 1.36940 * 119.99852 * 174.36754 * 12 11 10 14 14 H 1.07999 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99589 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00571 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99628 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46864 * 60.00440 * 17 15 13 19 19 H 1.48500 * 109.46921 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47243 * 300.00520 * 17 15 13 21 21 C 1.52998 * 117.49739 * 133.61500 * 10 9 8 22 22 C 1.53000 * 117.49519 * 64.99305 * 10 9 8 23 23 N 1.39834 * 107.24619 * 359.57945 * 4 3 2 24 24 C 1.46501 * 126.18387 * 180.26537 * 23 4 3 25 25 C 1.34614 * 125.65077 * 179.66685 * 2 1 3 26 26 O 1.21733 * 125.72812 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47342 * 270.33363 * 1 2 3 28 28 H 1.09000 * 109.46620 * 30.33554 * 1 2 3 29 29 H 1.09000 * 109.46916 * 150.32929 * 1 2 3 30 30 H 1.07996 * 126.06564 * 359.97438 * 3 2 1 31 31 H 0.96996 * 119.99973 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47075 * 59.99739 * 8 7 5 33 33 H 1.09004 * 109.46892 * 300.00096 * 8 7 5 34 34 H 1.09002 * 109.46936 * 295.46043 * 9 8 7 35 35 H 1.09003 * 109.47242 * 55.45216 * 9 8 7 36 36 H 1.09003 * 109.47064 * 54.94449 * 11 10 9 37 37 H 1.08997 * 109.47420 * 174.94565 * 11 10 9 38 38 H 0.97000 * 120.00024 * 354.37233 * 12 11 10 39 39 H 0.97000 * 120.00277 * 179.97438 * 16 15 13 40 40 H 1.09008 * 117.49987 * 0.02562 * 21 10 9 41 41 H 1.08994 * 117.49712 * 145.02326 * 21 10 9 42 42 H 1.08991 * 117.50030 * 214.97767 * 22 10 9 43 43 H 1.09005 * 117.50091 * 0.02562 * 22 10 9 44 44 H 1.08992 * 109.47583 * 90.00113 * 24 23 4 45 45 H 1.09003 * 109.47066 * 210.00562 * 24 23 4 46 46 H 1.09004 * 109.47074 * 329.99573 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0032 5 6 4.7393 1.5597 -0.0075 6 8 5.8498 1.0617 -0.0044 7 7 4.6020 2.9004 -0.0150 8 6 5.7895 3.7584 -0.0199 9 6 5.3582 5.2263 -0.0275 10 6 6.5940 6.1217 0.0817 11 6 7.1547 6.3032 1.4936 12 7 6.1762 7.0146 2.3199 13 6 6.4093 7.1914 3.6576 14 1 7.3146 6.8067 4.1035 15 6 5.4824 7.8660 4.4404 16 7 4.3793 8.3352 3.8969 17 14 5.8007 8.1078 6.2651 18 1 7.0560 8.8792 6.4507 19 1 4.6675 8.8523 6.8708 20 1 5.9313 6.7837 6.9246 21 6 6.6917 7.3108 -0.8760 22 6 7.5931 6.0910 -1.0766 23 7 3.5376 -0.6974 0.0046 24 6 4.7120 -1.5732 0.0100 25 6 2.2497 -1.0938 0.0064 26 8 1.8610 -2.2474 0.0126 27 1 -0.3634 0.0060 1.0276 28 1 -0.3632 0.8870 -0.5190 29 1 -0.3633 -0.8929 -0.5087 30 1 1.9248 2.1388 -0.0004 31 1 3.7169 3.2973 -0.0172 32 1 6.3849 3.5497 -0.9088 33 1 6.3850 3.5597 0.8712 34 1 4.8316 5.4454 -0.9564 35 1 4.6968 5.4151 0.8182 36 1 7.3585 5.3262 1.9320 37 1 8.0783 6.8800 1.4464 38 1 5.3633 7.3604 1.9193 39 1 3.7315 8.8063 4.4440 40 1 5.8752 7.4556 -1.5836 41 1 7.1553 8.2229 -0.5002 42 1 8.6498 6.2005 -0.8329 43 1 7.3698 5.4332 -1.9167 44 1 5.0029 -1.7847 1.0388 45 1 4.4715 -2.5067 -0.4989 46 1 5.5355 -1.0799 -0.5064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168372684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:14 Heat of formation + Delta-G solvation = -4.121472 kcal Electronic energy + Delta-G solvation = -26894.995285 eV Core-core repulsion = 23014.307633 eV Total energy + Delta-G solvation = -3880.687652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.54848 -40.61887 -39.44580 -38.02841 -36.59227 -35.99224 -35.66704 -32.73475 -32.24939 -30.75082 -28.93084 -27.73391 -27.09886 -25.10478 -24.56563 -23.84832 -22.86417 -21.81044 -21.56162 -20.02165 -19.15139 -18.79334 -17.91684 -17.67537 -17.12630 -16.78057 -16.49121 -16.35936 -16.18127 -15.92636 -15.57043 -15.29504 -15.11155 -14.95851 -14.73829 -14.61322 -14.15935 -13.97665 -13.77159 -13.44624 -13.25734 -13.11610 -12.95272 -12.74646 -12.63937 -12.48511 -12.22816 -12.14012 -11.89164 -11.87161 -11.76380 -11.15388 -11.02850 -10.96307 -10.84111 -10.51469 -10.13143 -8.93514 -8.92214 -7.91452 -5.17997 0.29130 1.08659 1.49170 1.50556 1.56635 1.62590 1.81574 2.18004 2.55699 2.58259 2.95999 3.41563 3.55779 3.87044 3.90794 3.94741 3.97404 4.05666 4.13517 4.18954 4.30574 4.32566 4.38028 4.49397 4.50502 4.55743 4.67162 4.73282 4.79575 4.90655 4.92281 5.00254 5.03668 5.14717 5.21251 5.24295 5.35046 5.40400 5.42558 5.46164 5.53044 5.59470 6.08045 6.31423 6.51294 7.00895 7.15546 7.39123 8.15651 8.42019 9.31316 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002808 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.385652 B = 9967.633663 C =11198.079813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.518 5.518 3 C 0.095 3.905 4 C -0.071 4.071 5 C 0.593 3.407 6 O -0.577 6.577 7 N -0.700 5.700 8 C 0.137 3.863 9 C -0.078 4.078 10 C -0.137 4.137 11 C 0.187 3.813 12 N -0.733 5.733 13 C -0.246 4.246 14 H 0.067 0.933 15 C -0.067 4.067 16 N -0.963 5.963 17 Si 0.965 3.035 18 H -0.282 1.282 19 H -0.293 1.293 20 H -0.282 1.282 21 C -0.165 4.165 22 C -0.152 4.152 23 N -0.518 5.518 24 C 0.100 3.900 25 C 0.630 3.370 26 O -0.609 6.609 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.009 0.991 38 H 0.378 0.622 39 H 0.251 0.749 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 -11.683 -14.801 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.232 5.232 3 C -0.035 4.035 4 C -0.179 4.179 5 C 0.380 3.620 6 O -0.458 6.458 7 N -0.352 5.352 8 C 0.013 3.987 9 C -0.115 4.115 10 C -0.138 4.138 11 C 0.060 3.940 12 N -0.376 5.376 13 C -0.378 4.378 14 H 0.085 0.915 15 C -0.260 4.260 16 N -0.613 5.613 17 Si 0.795 3.205 18 H -0.208 1.208 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.202 4.202 22 C -0.190 4.190 23 N -0.238 5.238 24 C -0.041 4.041 25 C 0.332 3.668 26 O -0.491 6.491 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.258 0.742 31 H 0.255 0.745 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.026 0.974 38 H 0.211 0.789 39 H 0.060 0.940 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.762 -12.918 -14.636 20.354 hybrid contribution -0.255 0.417 1.347 1.433 sum -6.017 -12.501 -13.289 19.211 Atomic orbital electron populations 1.22247 0.72059 1.06245 1.04883 1.45228 1.09410 1.05368 1.63233 1.22879 0.86441 0.94874 0.99344 1.19675 0.94790 0.83460 1.19981 1.16823 0.86603 0.82340 0.76248 1.90798 1.27544 1.74947 1.52466 1.45515 1.11423 1.04197 1.74024 1.21231 0.86814 0.88817 1.01814 1.21123 0.95826 0.91180 1.03414 1.21403 0.99390 1.02031 0.91015 1.20241 0.91107 0.93865 0.88762 1.42398 1.22877 1.67032 1.05315 1.19539 1.03005 1.28736 0.86522 0.91452 1.25400 0.97066 1.01752 1.01803 1.69770 1.11259 1.44184 1.36099 0.85345 0.76669 0.77578 0.80952 1.20833 1.21908 1.20792 1.23010 1.03154 0.92379 1.01669 1.23063 0.96304 1.00816 0.98775 1.45306 1.07059 1.05850 1.65572 1.21872 0.85102 0.93573 1.03516 1.16400 0.81348 0.85259 0.83754 1.90988 1.77307 1.18096 1.62666 0.89799 0.85364 0.90178 0.74154 0.74523 0.90472 0.93621 0.88617 0.91779 0.96359 0.97360 0.78931 0.93987 0.87110 0.90525 0.88962 0.86488 0.91361 0.89636 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.01 127.77 1.41 2.15 16 2 N -0.52 -8.71 3.12 -679.64 -2.12 -10.83 16 3 C 0.10 1.23 10.91 83.17 0.91 2.14 16 4 C -0.07 -1.48 6.88 39.35 0.27 -1.21 16 5 C 0.59 14.08 7.79 86.44 0.67 14.75 16 6 O -0.58 -18.04 14.83 -4.36 -0.06 -18.10 16 7 N -0.70 -13.21 5.54 -467.09 -2.59 -15.80 16 8 C 0.14 3.12 5.51 86.38 0.48 3.60 16 9 C -0.08 -1.80 5.24 30.59 0.16 -1.64 16 10 C -0.14 -3.83 1.52 -52.18 -0.08 -3.91 16 11 C 0.19 7.19 6.10 86.38 0.53 7.72 16 12 N -0.73 -35.49 5.30 -343.45 -1.82 -37.31 16 13 C -0.25 -13.48 9.99 84.03 0.84 -12.64 16 14 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 15 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 16 N -0.96 -56.38 13.06 21.65 0.28 -56.10 16 17 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 C -0.17 -4.13 9.90 30.59 0.30 -3.82 16 22 C -0.15 -3.31 9.57 30.60 0.29 -3.02 16 23 N -0.52 -12.92 3.21 -667.05 -2.14 -15.07 16 24 C 0.10 2.31 10.58 127.77 1.35 3.66 16 25 C 0.63 16.50 8.49 179.11 1.52 18.02 16 26 O -0.61 -20.25 17.59 -4.45 -0.08 -20.33 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.08 0.88 8.04 -2.39 -0.02 0.86 16 30 H 0.24 0.51 7.37 -2.91 -0.02 0.49 16 31 H 0.42 4.92 7.32 -92.71 -0.68 4.24 16 32 H 0.08 1.66 7.80 -2.39 -0.02 1.64 16 33 H 0.05 1.34 7.69 -2.38 -0.02 1.32 16 34 H 0.10 1.64 7.94 -2.39 -0.02 1.62 16 35 H 0.06 1.84 7.64 -2.39 -0.02 1.82 16 36 H 0.02 0.74 7.69 -2.39 -0.02 0.72 16 37 H 0.01 0.34 8.09 -2.39 -0.02 0.32 16 38 H 0.38 19.08 7.46 -92.71 -0.69 18.38 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.11 2.29 8.08 -2.38 -0.02 2.27 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 43 H 0.12 1.97 7.98 -2.38 -0.02 1.95 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 46 H 0.10 2.26 6.45 -2.38 -0.02 2.25 16 Total: -1.00 -80.11 386.97 2.25 -77.86 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.37 Total: 25.82 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 9.12 Total: 22.49 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -8.39 Total: -135.10 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.14 Total: -38.43 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.11 2.25 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168372684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.742 kcal (2) G-P(sol) polarization free energy of solvation -80.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds