Wall clock time and date at job start Fri Apr 10 2020 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.89420 * 2 1 4 4 N 1.30438 * 121.82467 * 179.70226 * 3 2 1 5 5 C 1.34322 * 121.47610 * 0.57261 * 4 3 2 6 6 C 1.48554 * 120.20741 * 179.69646 * 5 4 3 7 7 O 1.21466 * 119.99940 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00297 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47383 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.46973 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46973 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47202 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47307 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00067 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99851 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99833 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99799 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47351 * 60.00028 * 20 18 16 22 22 H 1.48509 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47380 * 299.99667 * 20 18 16 24 24 C 1.37926 * 119.58051 * 359.71873 * 5 4 3 25 25 C 1.34984 * 119.89450 * 180.26672 * 2 1 3 26 26 O 1.21907 * 120.71043 * 0.02613 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.73051 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.73108 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.73235 * 1 2 3 30 30 H 1.08003 * 119.08998 * 359.97385 * 3 2 1 31 31 H 0.96999 * 120.00191 * 0.02562 * 8 6 5 32 32 H 1.09008 * 109.47138 * 300.00738 * 9 8 6 33 33 H 1.08997 * 109.47023 * 60.00485 * 9 8 6 34 34 H 1.08993 * 109.46833 * 300.00375 * 10 9 8 35 35 H 1.08997 * 109.46959 * 60.00061 * 10 9 8 36 36 H 1.09001 * 109.47927 * 300.00041 * 11 10 9 37 37 H 1.09006 * 109.47265 * 60.00462 * 11 10 9 38 38 H 1.09001 * 109.47277 * 299.99875 * 12 11 10 39 39 H 1.08997 * 109.46959 * 60.00033 * 12 11 10 40 40 H 1.09008 * 109.46909 * 300.00149 * 13 12 11 41 41 H 1.08997 * 109.47357 * 59.99960 * 13 12 11 42 42 H 1.08994 * 109.47440 * 299.99980 * 14 13 12 43 43 H 1.09009 * 109.47211 * 60.00025 * 14 13 12 44 44 H 0.97008 * 119.99786 * 0.02562 * 15 14 13 45 45 H 0.97001 * 119.99743 * 179.97438 * 19 18 16 46 46 H 1.07995 * 120.83465 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2124 0.0058 5 6 4.1799 0.0911 0.0005 6 6 5.6631 0.1741 0.0005 7 8 6.3283 -0.8423 -0.0047 8 7 6.2708 1.3770 0.0063 9 6 7.7336 1.4588 0.0057 10 6 8.1623 2.9275 0.0136 11 6 9.6899 3.0128 0.0124 12 6 10.1186 4.4816 0.0196 13 6 11.6462 4.5670 0.0177 14 6 12.0749 6.0356 0.0243 15 7 13.5376 6.1174 0.0231 16 6 14.1551 7.3397 0.0278 17 1 13.5637 8.2433 0.0328 18 6 15.5411 7.4171 0.0261 19 7 16.2617 6.3158 0.0206 20 14 16.3832 9.0844 0.0333 21 1 15.9834 9.8359 1.2501 22 1 17.8562 8.8950 0.0307 23 1 15.9799 9.8480 -1.1749 24 6 3.5535 -1.1377 -0.0053 25 6 2.1378 -1.1702 -0.0054 26 8 1.5394 -2.2323 -0.0109 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8924 -0.5097 30 1 1.5802 2.0940 -0.0004 31 1 5.7398 2.1887 0.0108 32 1 8.1257 0.9613 0.8929 33 1 8.1244 0.9707 -0.8871 34 1 7.7702 3.4252 -0.8733 35 1 7.7715 3.4153 0.9066 36 1 10.0824 2.5150 0.8990 37 1 10.0803 2.5252 -0.8809 38 1 9.7262 4.9790 -0.8673 39 1 9.7282 4.9696 0.9126 40 1 12.0390 4.0694 0.9045 41 1 12.0363 4.0790 -0.8755 42 1 11.6822 6.5328 -0.8626 43 1 11.6848 6.5240 0.9174 44 1 14.0688 5.3057 0.0183 45 1 17.2302 6.3699 0.0190 46 1 4.1283 -2.0520 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178722455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:23 Heat of formation + Delta-G solvation = -35.438839 kcal Electronic energy + Delta-G solvation = -24858.583049 eV Core-core repulsion = 20976.537374 eV Total energy + Delta-G solvation = -3882.045675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43070 -40.08528 -38.21109 -36.90153 -35.89845 -35.47040 -33.96702 -31.93312 -31.68454 -30.12880 -28.92067 -27.07771 -25.35414 -25.00014 -23.80853 -22.28408 -21.51226 -20.86325 -20.64436 -19.26309 -18.42367 -17.71648 -17.11635 -16.96393 -16.41526 -16.28054 -16.21875 -15.39072 -15.10905 -14.73747 -14.52513 -14.41336 -14.01919 -13.92196 -13.50364 -13.47714 -13.43295 -13.38076 -12.92710 -12.72369 -12.35284 -11.74223 -11.37238 -11.28343 -11.15826 -11.10128 -10.92278 -10.90174 -10.71416 -10.71337 -10.49819 -10.32245 -10.24224 -9.96300 -9.62178 -9.48768 -9.19423 -8.82424 -6.87168 -5.72347 -3.00746 -0.35625 0.97069 1.70125 2.22341 2.54558 3.09651 3.21196 3.46554 3.50373 3.51932 3.76485 3.85266 4.22438 4.46413 4.51557 4.53544 4.64595 4.72979 4.74892 4.87030 4.96567 5.04395 5.22881 5.35044 5.39980 5.52221 5.56672 5.64332 5.69944 5.72482 5.80170 5.94011 5.97085 6.04241 6.14969 6.35564 6.36121 6.43477 6.50599 6.81531 6.93774 6.97809 7.08132 7.12714 7.68981 7.72885 8.47066 9.57566 10.17436 10.51921 11.50732 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.044904 B = 0.001306 C = 0.001272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.409596 B =21428.379677 C =22004.828887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.524 5.524 3 C 0.377 3.623 4 N -0.528 5.528 5 C 0.128 3.872 6 C 0.567 3.433 7 O -0.521 6.521 8 N -0.705 5.705 9 C 0.114 3.886 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.113 4.113 13 C -0.127 4.127 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.209 4.209 25 C 0.517 3.483 26 O -0.523 6.523 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.212 0.788 31 H 0.412 0.588 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.715 -11.447 -0.111 38.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.243 5.243 3 C 0.092 3.908 4 N -0.252 5.252 5 C 0.007 3.993 6 C 0.350 3.650 7 O -0.396 6.396 8 N -0.357 5.357 9 C -0.009 4.009 10 C -0.168 4.168 11 C -0.154 4.154 12 C -0.151 4.151 13 C -0.165 4.165 14 C 0.024 3.976 15 N -0.379 5.379 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.235 4.235 25 C 0.315 3.685 26 O -0.400 6.400 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.248 0.752 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -36.004 -12.080 -0.106 37.977 hybrid contribution 0.024 0.430 0.013 0.431 sum -35.980 -11.650 -0.094 37.819 Atomic orbital electron populations 1.22292 0.75944 1.05765 1.04708 1.46707 1.11042 1.08175 1.58339 1.24940 0.88984 0.90029 0.86826 1.68271 1.04263 1.29660 1.22973 1.21408 0.94651 0.89167 0.94084 1.17803 0.85378 0.84198 0.77618 1.90835 1.64597 1.35002 1.49207 1.45886 1.08322 1.08316 1.73143 1.21581 0.78312 0.98000 1.02979 1.21827 0.97609 0.94412 1.02988 1.21521 0.93331 0.97910 1.02685 1.21498 0.96459 0.95241 1.01927 1.21731 0.94286 0.98454 1.02004 1.20657 0.86283 0.93100 0.97515 1.42391 0.99862 1.06193 1.89474 1.19217 0.89650 0.85686 1.42586 0.91278 1.24747 0.96225 0.96996 1.03141 1.69655 1.05016 1.25813 1.57873 0.86256 0.78526 0.83515 0.77824 1.21292 1.21668 1.21287 1.23490 0.92916 1.00648 1.06493 1.17321 0.88701 0.83326 0.79184 1.90978 1.70275 1.28134 1.50573 0.89774 0.88412 0.88707 0.77170 0.75158 0.90916 0.90911 0.91111 0.91105 0.91577 0.91583 0.92076 0.92072 0.92085 0.92091 0.96600 0.96603 0.78333 0.93499 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.05 10.39 59.85 0.62 0.67 16 2 N -0.52 -2.18 2.97 -128.42 -0.38 -2.56 16 3 C 0.38 0.91 11.45 -90.67 -1.04 -0.13 16 4 N -0.53 -2.91 9.64 -10.82 -0.10 -3.01 16 5 C 0.13 1.05 6.77 -82.64 -0.56 0.49 16 6 C 0.57 5.71 7.83 -12.01 -0.09 5.62 16 7 O -0.52 -7.02 16.37 5.40 0.09 -6.93 16 8 N -0.71 -5.63 5.55 -61.02 -0.34 -5.97 16 9 C 0.11 0.95 5.67 -4.04 -0.02 0.93 16 10 C -0.13 -0.99 5.33 -26.73 -0.14 -1.13 16 11 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 12 C -0.11 -1.35 5.21 -26.73 -0.14 -1.49 16 13 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 14 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 15 N -0.74 -19.38 5.60 -59.91 -0.34 -19.71 16 16 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 20 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.21 -1.88 9.67 -38.41 -0.37 -2.25 16 25 C 0.52 4.44 7.47 -14.88 -0.11 4.32 16 26 O -0.52 -6.21 16.76 5.00 0.08 -6.13 16 27 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.10 0.25 7.44 -51.93 -0.39 -0.14 16 29 H 0.09 -0.25 8.00 -51.93 -0.42 -0.67 16 30 H 0.21 -0.58 8.01 -52.48 -0.42 -1.00 16 31 H 0.41 2.50 7.84 -40.82 -0.32 2.18 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.38 10.56 7.67 -40.82 -0.31 10.24 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.17 1.65 7.68 -52.49 -0.40 1.25 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -37.98 391.55 -9.10 -47.08 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.30 Total: 2.73 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.41 Total: -0.93 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.44 Total: -59.41 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.17 Total: -13.06 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.98 -9.10 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178722455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.638 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds