Wall clock time and date at job start Fri Apr 10 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.89420 * 2 1 4 4 N 1.30438 * 121.82467 * 179.70226 * 3 2 1 5 5 C 1.34322 * 121.47610 * 0.57261 * 4 3 2 6 6 C 1.48554 * 120.20741 * 179.69646 * 5 4 3 7 7 O 1.21466 * 119.99940 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00297 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47383 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.46973 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46973 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47202 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47307 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00067 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99851 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99833 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99799 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47351 * 60.00028 * 20 18 16 22 22 H 1.48509 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47380 * 299.99667 * 20 18 16 24 24 C 1.37926 * 119.58051 * 359.71873 * 5 4 3 25 25 C 1.34984 * 119.89450 * 180.26672 * 2 1 3 26 26 O 1.21907 * 120.71043 * 0.02613 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.73051 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.73108 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.73235 * 1 2 3 30 30 H 1.08003 * 119.08998 * 359.97385 * 3 2 1 31 31 H 0.96999 * 120.00191 * 0.02562 * 8 6 5 32 32 H 1.09008 * 109.47138 * 300.00738 * 9 8 6 33 33 H 1.08997 * 109.47023 * 60.00485 * 9 8 6 34 34 H 1.08993 * 109.46833 * 300.00375 * 10 9 8 35 35 H 1.08997 * 109.46959 * 60.00061 * 10 9 8 36 36 H 1.09001 * 109.47927 * 300.00041 * 11 10 9 37 37 H 1.09006 * 109.47265 * 60.00462 * 11 10 9 38 38 H 1.09001 * 109.47277 * 299.99875 * 12 11 10 39 39 H 1.08997 * 109.46959 * 60.00033 * 12 11 10 40 40 H 1.09008 * 109.46909 * 300.00149 * 13 12 11 41 41 H 1.08997 * 109.47357 * 59.99960 * 13 12 11 42 42 H 1.08994 * 109.47440 * 299.99980 * 14 13 12 43 43 H 1.09009 * 109.47211 * 60.00025 * 14 13 12 44 44 H 0.97008 * 119.99786 * 0.02562 * 15 14 13 45 45 H 0.97001 * 119.99743 * 179.97438 * 19 18 16 46 46 H 1.07995 * 120.83465 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2124 0.0058 5 6 4.1799 0.0911 0.0005 6 6 5.6631 0.1741 0.0005 7 8 6.3283 -0.8423 -0.0047 8 7 6.2708 1.3770 0.0063 9 6 7.7336 1.4588 0.0057 10 6 8.1623 2.9275 0.0136 11 6 9.6899 3.0128 0.0124 12 6 10.1186 4.4816 0.0196 13 6 11.6462 4.5670 0.0177 14 6 12.0749 6.0356 0.0243 15 7 13.5376 6.1174 0.0231 16 6 14.1551 7.3397 0.0278 17 1 13.5637 8.2433 0.0328 18 6 15.5411 7.4171 0.0261 19 7 16.2617 6.3158 0.0206 20 14 16.3832 9.0844 0.0333 21 1 15.9834 9.8359 1.2501 22 1 17.8562 8.8950 0.0307 23 1 15.9799 9.8480 -1.1749 24 6 3.5535 -1.1377 -0.0053 25 6 2.1378 -1.1702 -0.0054 26 8 1.5394 -2.2323 -0.0109 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8924 -0.5097 30 1 1.5802 2.0940 -0.0004 31 1 5.7398 2.1887 0.0108 32 1 8.1257 0.9613 0.8929 33 1 8.1244 0.9707 -0.8871 34 1 7.7702 3.4252 -0.8733 35 1 7.7715 3.4153 0.9066 36 1 10.0824 2.5150 0.8990 37 1 10.0803 2.5252 -0.8809 38 1 9.7262 4.9790 -0.8673 39 1 9.7282 4.9696 0.9126 40 1 12.0390 4.0694 0.9045 41 1 12.0363 4.0790 -0.8755 42 1 11.6822 6.5328 -0.8626 43 1 11.6848 6.5240 0.9174 44 1 14.0688 5.3057 0.0183 45 1 17.2302 6.3699 0.0190 46 1 4.1283 -2.0520 -0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178722455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:22 Heat of formation + Delta-G solvation = -62.589764 kcal Electronic energy + Delta-G solvation = -24859.760402 eV Core-core repulsion = 20976.537374 eV Total energy + Delta-G solvation = -3883.223027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92181 -40.85269 -38.82553 -37.91986 -36.81330 -36.35875 -35.34098 -33.50390 -32.24278 -31.58171 -29.44488 -28.18334 -26.18744 -25.60933 -25.10205 -23.56417 -22.27844 -22.06084 -21.63098 -19.81512 -19.13305 -18.97397 -18.09996 -17.57721 -17.07412 -17.04876 -16.89045 -16.63212 -16.34384 -15.59319 -15.41695 -15.41263 -15.32207 -15.08470 -14.52731 -14.42672 -14.19775 -13.89330 -13.78574 -13.47358 -13.41424 -13.02873 -12.92016 -12.61927 -12.38555 -12.20961 -12.04972 -11.91446 -11.78790 -11.76490 -11.53339 -11.47867 -11.43307 -11.30751 -11.05377 -10.91050 -10.22441 -9.78230 -9.00121 -7.95041 -5.24622 -0.90390 0.49098 1.35057 1.47600 1.51494 1.52297 1.57775 1.85302 2.51938 2.57011 2.80197 3.27264 3.38331 3.63923 3.74222 3.89393 4.02954 4.04779 4.08420 4.27112 4.30989 4.34984 4.38331 4.47125 4.49693 4.61594 4.66168 4.80153 4.83474 4.86950 5.00235 5.00378 5.09561 5.16368 5.17822 5.28907 5.31737 5.36336 5.41452 5.49249 5.56907 5.59928 6.25476 6.27483 6.52237 6.58642 6.99197 7.32894 8.10527 8.33159 9.28607 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.044904 B = 0.001306 C = 0.001272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.409596 B =21428.379677 C =22004.828887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.516 5.516 3 C 0.400 3.600 4 N -0.540 5.540 5 C 0.145 3.855 6 C 0.560 3.440 7 O -0.564 6.564 8 N -0.689 5.689 9 C 0.115 3.885 10 C -0.117 4.117 11 C -0.114 4.114 12 C -0.103 4.103 13 C -0.117 4.117 14 C 0.148 3.852 15 N -0.752 5.752 16 C -0.252 4.252 17 H 0.076 0.924 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.978 3.022 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.276 1.276 24 C -0.244 4.244 25 C 0.512 3.488 26 O -0.570 6.570 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.276 0.724 31 H 0.424 0.576 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.372 0.628 45 H 0.252 0.748 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.337 -8.373 -0.107 40.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.264 5.264 5 C 0.022 3.978 6 C 0.345 3.655 7 O -0.443 6.443 8 N -0.340 5.340 9 C -0.008 4.008 10 C -0.154 4.154 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.155 4.155 14 C 0.022 3.978 15 N -0.394 5.394 16 C -0.384 4.384 17 H 0.094 0.906 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.202 1.202 24 C -0.271 4.271 25 C 0.311 3.689 26 O -0.451 6.451 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.292 0.708 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -38.722 -8.924 -0.102 39.737 hybrid contribution 0.751 -0.430 0.014 0.865 sum -37.971 -9.354 -0.088 39.107 Atomic orbital electron populations 1.22640 0.73402 1.07156 1.05972 1.46795 1.12624 1.07323 1.56378 1.26217 0.88204 0.91002 0.82836 1.68323 1.05718 1.27895 1.24440 1.21165 0.93876 0.89712 0.93049 1.18143 0.86242 0.84086 0.77063 1.90810 1.65748 1.36490 1.51254 1.45784 1.08282 1.08205 1.71770 1.21525 0.78450 0.98617 1.02183 1.21689 0.95810 0.93664 1.04283 1.21453 0.94977 0.96245 1.02507 1.21417 0.92988 0.96913 1.02821 1.21646 0.97427 0.95125 1.01343 1.20886 0.83256 0.96229 0.97478 1.42672 1.02178 1.05080 1.89490 1.19671 0.90268 0.86883 1.41569 0.90574 1.25638 0.96998 1.00788 1.03517 1.69824 1.04902 1.28082 1.59405 0.85155 0.76866 0.79095 0.78308 1.20218 1.22033 1.20200 1.23290 0.93584 1.00401 1.09865 1.17267 0.88537 0.84112 0.78989 1.90939 1.70994 1.30045 1.53123 0.88533 0.90529 0.83851 0.70847 0.73690 0.91831 0.91818 0.89782 0.89785 0.91880 0.91882 0.91159 0.91158 0.92788 0.92791 0.96251 0.96260 0.79613 0.93959 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.06 10.39 127.77 1.33 1.26 16 2 N -0.52 -3.14 2.97 -678.23 -2.01 -5.16 16 3 C 0.40 0.30 11.45 180.37 2.07 2.37 16 4 N -0.54 -4.51 9.64 -188.16 -1.81 -6.32 16 5 C 0.14 2.36 6.77 41.44 0.28 2.64 16 6 C 0.56 11.46 7.83 87.00 0.68 12.14 16 7 O -0.56 -16.20 16.37 -3.61 -0.06 -16.26 16 8 N -0.69 -10.15 5.55 -465.28 -2.58 -12.73 16 9 C 0.12 1.81 5.67 86.38 0.49 2.30 16 10 C -0.12 -1.46 5.33 30.59 0.16 -1.30 16 11 C -0.11 -2.00 5.21 30.59 0.16 -1.84 16 12 C -0.10 -2.24 5.21 30.60 0.16 -2.08 16 13 C -0.12 -3.69 5.33 30.59 0.16 -3.53 16 14 C 0.15 5.98 6.26 86.38 0.54 6.52 16 15 N -0.75 -39.79 5.60 -343.46 -1.92 -41.71 16 16 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 19 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16 20 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C -0.24 -4.79 9.67 23.03 0.22 -4.57 16 25 C 0.51 9.12 7.47 85.04 0.63 9.75 16 26 O -0.57 -14.63 16.76 -5.01 -0.08 -14.72 16 27 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.08 0.31 7.44 -2.39 -0.02 0.30 16 29 H 0.14 -1.56 8.00 -2.38 -0.02 -1.58 16 30 H 0.28 -3.48 8.01 -2.91 -0.02 -3.50 16 31 H 0.42 4.07 7.84 -92.71 -0.73 3.34 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.37 20.92 7.67 -92.70 -0.71 20.21 16 45 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.15 3.43 7.68 -2.91 -0.02 3.41 16 Total: -1.00 -87.04 391.55 1.58 -85.45 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.45 Total: 17.41 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 8.20 Total: 5.95 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -8.05 Total: -126.39 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.14 Total: -30.98 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -87.04 1.58 -85.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178722455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.863 kcal (2) G-P(sol) polarization free energy of solvation -87.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds