Wall clock time and date at job start Fri Apr 10 2020 18:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46935 * 108.77357 * 65.31925 * 4 2 1 6 6 C 1.34776 * 120.62393 * 233.63133 * 5 4 2 7 7 O 1.21279 * 120.00788 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99157 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.46585 * 180.02562 * 8 6 5 10 10 N 1.46506 * 109.46965 * 180.02562 * 9 8 6 11 11 C 1.34599 * 126.44120 * 124.70840 * 10 9 8 12 12 N 1.31066 * 106.68139 * 179.87368 * 11 10 9 13 13 N 1.28845 * 107.98930 * 0.39234 * 12 11 10 14 14 N 1.28738 * 109.40010 * 359.74974 * 13 12 11 15 15 C 1.46922 * 118.73854 * 53.60530 * 5 4 2 16 16 C 1.53189 * 108.77709 * 306.39365 * 15 5 4 17 17 C 1.53046 * 109.49648 * 239.93929 * 2 1 3 18 18 H 1.09004 * 109.45579 * 181.39362 * 17 2 1 19 19 C 1.52993 * 109.46203 * 61.43406 * 17 2 1 20 20 N 1.46503 * 109.47451 * 175.00061 * 19 17 2 21 21 C 1.36931 * 120.00083 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00399 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99940 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99596 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00058 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47237 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47219 * 120.00015 * 25 23 21 28 28 H 1.48498 * 109.46970 * 240.00098 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 32 32 H 1.08994 * 109.59134 * 185.10276 * 4 2 1 33 33 H 1.09002 * 109.58912 * 305.53178 * 4 2 1 34 34 H 1.08997 * 109.47788 * 299.99906 * 8 6 5 35 35 H 1.09001 * 109.47185 * 60.00440 * 8 6 5 36 36 H 1.09004 * 109.47211 * 299.99749 * 9 8 6 37 37 H 1.08987 * 109.47392 * 60.00684 * 9 8 6 38 38 H 1.08000 * 126.65622 * 0.02562 * 11 10 9 39 39 H 1.09003 * 109.58287 * 66.18381 * 15 5 4 40 40 H 1.08999 * 109.58546 * 186.46428 * 15 5 4 41 41 H 1.09002 * 109.49258 * 174.58318 * 16 15 5 42 42 H 1.08993 * 109.49716 * 294.64875 * 16 15 5 43 43 H 1.08999 * 109.46974 * 295.00245 * 19 17 2 44 44 H 1.09000 * 109.47395 * 54.99479 * 19 17 2 45 45 H 0.97000 * 119.99146 * 359.97438 * 20 19 17 46 46 H 0.97002 * 119.99342 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 1.6516 -2.1379 1.1700 6 6 0.9741 -2.7212 2.1786 7 8 0.6800 -2.0779 3.1637 8 6 0.5810 -4.1729 2.0816 9 6 -0.1727 -4.5828 3.3485 10 7 -0.5543 -5.9941 3.2546 11 6 -0.2586 -6.9630 4.1409 12 7 -0.7885 -8.0694 3.6795 13 7 -1.3718 -7.7961 2.5636 14 7 -1.2322 -6.5430 2.3038 15 6 2.0140 -2.9040 -0.0301 16 6 1.5030 -2.1560 -1.2655 17 6 2.0408 -0.7227 -1.2487 18 1 3.1305 -0.7440 -1.2356 19 6 1.5607 0.0178 -2.4984 20 7 2.1467 -0.6027 -3.6891 21 6 1.8577 -0.1067 -4.9323 22 1 1.1981 0.7423 -5.0350 23 6 2.4134 -0.6943 -6.0605 24 7 3.2185 -1.7281 -5.9351 25 14 2.0198 -0.0172 -7.7563 26 1 1.0975 1.1393 -7.6257 27 1 3.2748 0.4221 -8.4174 28 1 1.3737 -1.0751 -8.5739 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 3.1275 -0.6459 1.2981 33 1 1.6008 -0.2726 2.1390 34 1 -0.0622 -4.3180 1.2137 35 1 1.4764 -4.7856 1.9768 36 1 0.4702 -4.4376 4.2168 37 1 -1.0680 -3.9702 3.4529 38 1 0.3038 -6.8500 5.0560 39 1 3.0980 -3.0042 -0.0861 40 1 1.5575 -3.8927 0.0158 41 1 1.8481 -2.6633 -2.1664 42 1 0.4133 -2.1363 -1.2538 43 1 0.4737 -0.0367 -2.5579 44 1 1.8695 1.0617 -2.4434 45 1 2.7394 -1.3650 -3.5967 46 1 3.6065 -2.1389 -6.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185361279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:09 Heat of formation + Delta-G solvation = 90.795591 kcal Electronic energy + Delta-G solvation = -27365.898944 eV Core-core repulsion = 23521.619956 eV Total energy + Delta-G solvation = -3844.278988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.50867 -40.73326 -38.47146 -36.41681 -35.10886 -33.61893 -32.85911 -32.15767 -31.51580 -30.41460 -27.47457 -27.10037 -25.64977 -24.16938 -23.76148 -23.15154 -22.78531 -21.44768 -19.99101 -18.65453 -18.29459 -17.45503 -17.23597 -16.83509 -16.25663 -16.13740 -15.93779 -15.09736 -14.95356 -14.41640 -14.14710 -13.97515 -13.84381 -13.64202 -13.43870 -13.04516 -12.98319 -12.61594 -12.56639 -12.47940 -12.27894 -12.03599 -11.67869 -11.52400 -11.45976 -11.24218 -11.11930 -10.99123 -10.83573 -10.69754 -10.44949 -10.38584 -10.28001 -10.04730 -9.96812 -9.69429 -8.90866 -8.80072 -6.95407 -5.81220 -3.09227 0.88704 1.52996 1.92658 2.23459 2.72507 3.40440 3.46542 3.48406 3.72335 3.83654 4.00867 4.12185 4.37271 4.54671 4.59123 4.70644 4.82577 4.85893 4.92458 5.01022 5.05368 5.11192 5.14609 5.33066 5.36319 5.45166 5.54432 5.59601 5.67654 5.73402 5.73939 5.75340 5.95465 6.00324 6.08754 6.20213 6.28429 6.33519 6.37924 6.57259 6.73836 6.86615 7.11403 7.67027 7.78014 8.26344 8.38222 9.49602 10.07183 10.41549 11.41804 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002568 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.902364 B =10900.109646 C =12186.736621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.524 3.476 7 O -0.549 6.549 8 C -0.159 4.159 9 C 0.132 3.868 10 N -0.309 5.309 11 C 0.160 3.840 12 N -0.309 5.309 13 N -0.075 5.075 14 N -0.089 5.089 15 C 0.102 3.898 16 C -0.128 4.128 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.235 0.765 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -3.940 22.874 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.311 3.689 7 O -0.428 6.428 8 C -0.200 4.200 9 C 0.010 3.990 10 N -0.111 5.111 11 C -0.138 4.138 12 N -0.157 5.157 13 N -0.070 5.070 14 N -0.076 5.076 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.107 4.107 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.742 -4.261 22.318 23.027 hybrid contribution 0.689 0.764 -0.507 1.147 sum -3.052 -3.496 21.811 22.300 Atomic orbital electron populations 1.21862 0.94839 1.01910 1.01594 1.21480 0.96701 0.99575 0.94094 0.89903 1.21738 0.99568 0.79792 0.99425 1.48088 1.55012 1.11949 1.17987 1.20006 0.77765 0.88305 0.82840 1.90714 1.55516 1.65374 1.31232 1.21954 1.03003 0.95382 0.99638 1.22003 1.02819 0.73667 1.00467 1.48847 1.35026 1.12243 1.15018 1.27778 1.02543 0.83785 0.99715 1.75025 1.11765 1.23136 1.05799 1.78691 1.15970 1.04215 1.08087 1.78929 1.11484 1.04823 1.12336 1.21964 1.00865 0.94854 0.84362 1.21985 1.01498 0.96096 0.97062 1.21318 1.00274 0.94571 0.94580 0.91001 1.20708 0.95949 0.94652 0.85622 1.42380 1.56841 1.37559 1.00863 1.19264 1.23017 1.10822 0.83809 0.91230 1.24726 1.00058 0.98383 0.97843 1.69658 1.35697 1.24447 1.28472 0.86132 0.77423 0.78026 0.84711 1.20594 1.21881 1.21855 0.93302 0.92688 0.91846 0.91315 0.89004 0.86633 0.87737 0.85900 0.86601 0.74899 0.90764 0.89975 0.89207 0.91204 0.96063 0.96483 0.78336 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.38 37.16 0.31 -1.38 16 2 C -0.10 -1.13 2.72 -90.50 -0.25 -1.37 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.18 5.83 -3.71 -0.02 1.16 16 5 N -0.60 -5.76 2.41 -172.77 -0.42 -6.18 16 6 C 0.52 4.82 7.70 -10.98 -0.08 4.74 16 7 O -0.55 -6.42 15.39 5.56 0.09 -6.33 16 8 C -0.16 -1.02 4.19 -27.88 -0.12 -1.14 16 9 C 0.13 0.69 5.77 -4.03 -0.02 0.67 16 10 N -0.31 -2.29 3.44 -62.55 -0.22 -2.51 16 11 C 0.16 1.04 12.79 -90.39 -1.16 -0.11 16 12 N -0.31 -3.35 12.36 29.59 0.37 -2.99 16 13 N -0.08 -0.96 13.43 60.35 0.81 -0.15 16 14 N -0.09 -0.99 13.07 60.35 0.79 -0.20 16 15 C 0.10 0.97 6.34 -3.71 -0.02 0.95 16 16 C -0.13 -1.66 4.91 -26.58 -0.13 -1.79 16 17 C -0.09 -1.23 1.96 -90.55 -0.18 -1.41 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 19 C 0.16 2.94 5.19 -4.04 -0.02 2.92 16 20 N -0.73 -17.53 5.32 -59.91 -0.32 -17.85 16 21 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 25 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 31 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.98 7.00 -51.93 -0.36 0.61 16 34 H 0.12 0.81 7.69 -51.93 -0.40 0.41 16 35 H 0.10 0.55 7.94 -51.93 -0.41 0.13 16 36 H 0.12 0.36 8.04 -51.93 -0.42 -0.06 16 37 H 0.12 0.65 8.10 -51.94 -0.42 0.22 16 38 H 0.23 0.25 8.06 -52.49 -0.42 -0.18 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 41 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 42 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 43 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 9.52 6.85 -40.82 -0.28 9.24 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -34.40 368.00 -6.40 -40.80 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.81 Total: 3.45 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.94 Total: -3.89 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 1.74 Total: -56.65 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: 0.09 Total: -6.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.40 -6.40 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185361279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.593 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds