Wall clock time and date at job start Fri Apr 10 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49938 * 2 1 4 4 C 1.53189 * 109.50088 * 120.06542 * 2 1 3 5 5 N 1.46935 * 108.77357 * 65.31925 * 4 2 1 6 6 C 1.34776 * 120.62393 * 233.63133 * 5 4 2 7 7 O 1.21279 * 120.00788 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99157 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.46585 * 180.02562 * 8 6 5 10 10 N 1.46506 * 109.46965 * 180.02562 * 9 8 6 11 11 C 1.34599 * 126.44120 * 124.70840 * 10 9 8 12 12 N 1.31066 * 106.68139 * 179.87368 * 11 10 9 13 13 N 1.28845 * 107.98930 * 0.39234 * 12 11 10 14 14 N 1.28738 * 109.40010 * 359.74974 * 13 12 11 15 15 C 1.46922 * 118.73854 * 53.60530 * 5 4 2 16 16 C 1.53189 * 108.77709 * 306.39365 * 15 5 4 17 17 C 1.53046 * 109.49648 * 239.93929 * 2 1 3 18 18 H 1.09004 * 109.45579 * 181.39362 * 17 2 1 19 19 C 1.52993 * 109.46203 * 61.43406 * 17 2 1 20 20 N 1.46503 * 109.47451 * 175.00061 * 19 17 2 21 21 C 1.36931 * 120.00083 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00399 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99940 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99596 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00058 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47237 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47219 * 120.00015 * 25 23 21 28 28 H 1.48498 * 109.46970 * 240.00098 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99649 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99822 * 1 2 3 32 32 H 1.08994 * 109.59134 * 185.10276 * 4 2 1 33 33 H 1.09002 * 109.58912 * 305.53178 * 4 2 1 34 34 H 1.08997 * 109.47788 * 299.99906 * 8 6 5 35 35 H 1.09001 * 109.47185 * 60.00440 * 8 6 5 36 36 H 1.09004 * 109.47211 * 299.99749 * 9 8 6 37 37 H 1.08987 * 109.47392 * 60.00684 * 9 8 6 38 38 H 1.08000 * 126.65622 * 0.02562 * 11 10 9 39 39 H 1.09003 * 109.58287 * 66.18381 * 15 5 4 40 40 H 1.08999 * 109.58546 * 186.46428 * 15 5 4 41 41 H 1.09002 * 109.49258 * 174.58318 * 16 15 5 42 42 H 1.08993 * 109.49716 * 294.64875 * 16 15 5 43 43 H 1.08999 * 109.46974 * 295.00245 * 19 17 2 44 44 H 1.09000 * 109.47395 * 54.99479 * 19 17 2 45 45 H 0.97000 * 119.99146 * 359.97438 * 20 19 17 46 46 H 0.97002 * 119.99342 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 1.6516 -2.1379 1.1700 6 6 0.9741 -2.7212 2.1786 7 8 0.6800 -2.0779 3.1637 8 6 0.5810 -4.1729 2.0816 9 6 -0.1727 -4.5828 3.3485 10 7 -0.5543 -5.9941 3.2546 11 6 -0.2586 -6.9630 4.1409 12 7 -0.7885 -8.0694 3.6795 13 7 -1.3718 -7.7961 2.5636 14 7 -1.2322 -6.5430 2.3038 15 6 2.0140 -2.9040 -0.0301 16 6 1.5030 -2.1560 -1.2655 17 6 2.0408 -0.7227 -1.2487 18 1 3.1305 -0.7440 -1.2356 19 6 1.5607 0.0178 -2.4984 20 7 2.1467 -0.6027 -3.6891 21 6 1.8577 -0.1067 -4.9323 22 1 1.1981 0.7423 -5.0350 23 6 2.4134 -0.6943 -6.0605 24 7 3.2185 -1.7281 -5.9351 25 14 2.0198 -0.0172 -7.7563 26 1 1.0975 1.1393 -7.6257 27 1 3.2748 0.4221 -8.4174 28 1 1.3737 -1.0751 -8.5739 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 3.1275 -0.6459 1.2981 33 1 1.6008 -0.2726 2.1390 34 1 -0.0622 -4.3180 1.2137 35 1 1.4764 -4.7856 1.9768 36 1 0.4702 -4.4376 4.2168 37 1 -1.0680 -3.9702 3.4529 38 1 0.3038 -6.8500 5.0560 39 1 3.0980 -3.0042 -0.0861 40 1 1.5575 -3.8927 0.0158 41 1 1.8481 -2.6633 -2.1664 42 1 0.4133 -2.1363 -1.2538 43 1 0.4737 -0.0367 -2.5579 44 1 1.8695 1.0617 -2.4434 45 1 2.7394 -1.3650 -3.5967 46 1 3.6065 -2.1389 -6.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185361279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:08 Heat of formation + Delta-G solvation = 68.312376 kcal Electronic energy + Delta-G solvation = -27366.873889 eV Core-core repulsion = 23521.619956 eV Total energy + Delta-G solvation = -3845.253933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.16429 -41.55622 -39.42897 -37.06168 -36.54955 -34.89906 -33.58545 -33.31783 -32.31046 -31.94740 -28.50415 -28.26298 -26.48713 -25.40316 -24.78958 -24.17541 -23.55919 -22.71418 -20.84441 -19.62160 -19.21486 -18.75809 -18.07446 -17.67267 -16.96730 -16.82521 -16.72952 -16.62467 -15.81937 -15.72962 -15.43087 -15.25010 -14.84971 -14.64426 -14.43647 -14.08128 -13.86858 -13.74425 -13.67507 -13.41866 -13.16067 -12.98381 -12.84953 -12.67823 -12.58620 -12.36909 -12.18141 -12.15380 -12.02665 -11.91687 -11.85278 -11.55685 -11.40894 -11.32954 -11.21849 -10.92967 -10.83164 -9.64135 -8.96687 -7.95515 -5.22571 0.28755 1.02358 1.24390 1.46806 1.47330 1.52051 1.56924 2.00154 2.55682 3.24457 3.36175 3.38520 3.53866 3.56970 3.73820 3.78314 3.84283 3.88748 4.06929 4.21489 4.24985 4.33320 4.35557 4.42030 4.46185 4.49299 4.64430 4.66769 4.74637 4.77442 4.81057 4.84750 4.87978 4.99060 5.09730 5.18267 5.20143 5.25331 5.26493 5.33627 5.48738 5.53594 5.62955 6.28042 6.35568 7.04679 7.34824 7.57839 8.11889 8.35279 9.27980 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002568 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.902364 B =10900.109646 C =12186.736621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.089 0.911 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.528 3.472 7 O -0.571 6.571 8 C -0.154 4.154 9 C 0.133 3.867 10 N -0.303 5.303 11 C 0.183 3.817 12 N -0.346 5.346 13 N -0.114 5.114 14 N -0.112 5.112 15 C 0.112 3.888 16 C -0.124 4.124 17 C -0.078 4.078 18 H 0.068 0.932 19 C 0.157 3.843 20 N -0.742 5.742 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.288 0.712 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.376 0.624 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -3.530 24.935 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.316 3.684 7 O -0.452 6.452 8 C -0.194 4.194 9 C 0.013 3.987 10 N -0.106 5.106 11 C -0.115 4.115 12 N -0.194 5.194 13 N -0.108 5.108 14 N -0.099 5.099 15 C -0.011 4.011 16 C -0.162 4.162 17 C -0.097 4.097 18 H 0.086 0.914 19 C 0.031 3.969 20 N -0.385 5.385 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.798 3.202 26 H -0.193 1.193 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.173 0.827 37 H 0.131 0.869 38 H 0.303 0.697 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.208 0.792 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.389 -3.823 24.404 24.933 hybrid contribution 0.560 0.736 -1.065 1.411 sum -2.830 -3.086 23.339 23.712 Atomic orbital electron populations 1.21805 0.94982 1.01536 1.01407 1.21416 0.96432 0.99845 0.93405 0.89265 1.21669 1.00227 0.79989 0.98234 1.48105 1.55207 1.11804 1.18093 1.20344 0.76811 0.89116 0.82128 1.90710 1.56211 1.66196 1.32060 1.21911 1.03754 0.93643 1.00106 1.22197 1.03158 0.72353 1.01032 1.48972 1.34192 1.12966 1.14432 1.28716 1.00515 0.82131 1.00089 1.74939 1.13178 1.25416 1.05914 1.78667 1.17583 1.05129 1.09461 1.78853 1.12595 1.04631 1.13865 1.21872 1.01436 0.95111 0.82644 1.21866 1.01033 0.95551 0.97761 1.21193 0.99955 0.95031 0.93524 0.91377 1.20858 0.95413 0.94689 0.85931 1.42566 1.56863 1.37496 1.01573 1.19624 1.22138 1.10401 0.85292 0.91127 1.25484 1.00674 0.99118 1.01297 1.69795 1.37085 1.25828 1.29019 0.85147 0.77120 0.77552 0.80402 1.19342 1.22017 1.22098 0.92225 0.93143 0.93234 0.90147 0.88980 0.87275 0.85970 0.82686 0.86883 0.69654 0.89860 0.87893 0.92077 0.91825 0.96406 0.96851 0.79168 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.38 71.98 0.60 -2.51 16 2 C -0.09 -1.95 2.72 -10.72 -0.03 -1.98 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.18 5.83 86.36 0.50 2.68 16 5 N -0.60 -10.16 2.41 -818.91 -1.97 -12.14 16 6 C 0.53 8.30 7.70 87.66 0.67 8.97 16 7 O -0.57 -11.79 15.39 -3.03 -0.05 -11.84 16 8 C -0.15 -1.54 4.19 29.85 0.12 -1.42 16 9 C 0.13 0.98 5.77 86.38 0.50 1.48 16 10 N -0.30 -3.78 3.44 -351.81 -1.21 -4.99 16 11 C 0.18 1.84 12.79 180.27 2.31 4.15 16 12 N -0.35 -7.12 12.36 -60.30 -0.75 -7.86 16 13 N -0.11 -2.91 13.43 37.01 0.50 -2.41 16 14 N -0.11 -2.40 13.07 37.02 0.48 -1.92 16 15 C 0.11 1.93 6.34 86.36 0.55 2.47 16 16 C -0.12 -3.15 4.91 30.69 0.15 -3.00 16 17 C -0.08 -2.14 1.96 -10.75 -0.02 -2.16 16 18 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 19 C 0.16 5.89 5.19 86.38 0.45 6.34 16 20 N -0.74 -36.13 5.32 -343.46 -1.83 -37.95 16 21 C -0.24 -13.33 9.99 84.04 0.84 -12.49 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 25 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.16 5.97 -2.39 -0.01 1.15 16 31 H 0.05 1.23 6.58 -2.38 -0.02 1.21 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.73 7.00 -2.39 -0.02 1.71 16 34 H 0.11 1.32 7.69 -2.39 -0.02 1.30 16 35 H 0.12 0.84 7.94 -2.39 -0.02 0.82 16 36 H 0.16 0.20 8.04 -2.38 -0.02 0.18 16 37 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.29 -0.83 8.06 -2.91 -0.02 -0.86 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.38 5.93 -2.39 -0.01 1.36 16 41 H 0.06 1.93 7.15 -2.39 -0.02 1.91 16 42 H 0.06 1.68 6.34 -2.39 -0.02 1.67 16 43 H 0.02 0.69 6.74 -2.39 -0.02 0.68 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.38 19.17 6.85 -92.71 -0.63 18.53 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.40 368.00 4.97 -71.43 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.37 Total: 18.59 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 7.11 Total: -1.15 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -4.49 Total: -124.79 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.05 Total: -11.84 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.40 4.97 -71.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185361279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.742 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds