Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47037 * 2 1 4 4 C 1.42904 * 113.99901 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47027 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47007 * 179.97438 * 5 4 3 7 7 C 1.34261 * 125.74912 * 124.71915 * 6 5 4 8 8 C 1.38046 * 107.41373 * 179.90491 * 7 6 5 9 9 C 1.47429 * 126.41292 * 180.10406 * 8 7 6 10 10 O 1.21600 * 120.00253 * 354.55828 * 9 8 7 11 11 N 1.34781 * 120.00029 * 174.56035 * 9 8 7 12 12 C 1.47424 * 125.64920 * 184.37748 * 11 9 8 13 13 C 1.55130 * 104.72253 * 155.81753 * 12 11 9 14 14 C 1.55162 * 101.48338 * 37.29611 * 13 12 11 15 15 H 1.08999 * 110.71297 * 82.69784 * 14 13 12 16 16 N 1.46497 * 110.71990 * 205.96629 * 14 13 12 17 17 C 1.36934 * 120.00257 * 199.97769 * 16 14 13 18 18 H 1.08004 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00422 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00328 * 180.02562 * 19 17 16 21 21 Si 1.86810 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47173 * 89.99881 * 21 19 17 23 23 H 1.48497 * 109.46797 * 209.99969 * 21 19 17 24 24 H 1.48504 * 109.46925 * 330.00195 * 21 19 17 25 25 C 1.47019 * 125.64650 * 4.69086 * 11 9 8 26 26 C 1.41289 * 107.17320 * 0.35889 * 8 7 6 27 27 N 1.30449 * 108.02026 * 359.77425 * 26 8 7 28 28 H 1.09000 * 109.47349 * 299.99925 * 1 2 3 29 29 H 1.08994 * 109.47292 * 60.00400 * 1 2 3 30 30 H 1.09004 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47821 * 239.99879 * 2 1 3 32 32 H 1.09007 * 109.47418 * 119.99892 * 2 1 3 33 33 H 1.08998 * 109.47361 * 59.99891 * 4 3 2 34 34 H 1.08999 * 109.47343 * 299.99632 * 4 3 2 35 35 H 1.08991 * 109.47322 * 300.00009 * 5 4 3 36 36 H 1.09009 * 109.46672 * 60.00383 * 5 4 3 37 37 H 1.07997 * 126.29867 * 0.02562 * 7 6 5 38 38 H 1.08995 * 110.36964 * 274.75247 * 12 11 9 39 39 H 1.09003 * 110.36500 * 37.07365 * 12 11 9 40 40 H 1.08997 * 111.19142 * 279.19523 * 13 12 11 41 41 H 1.08998 * 110.90675 * 155.27997 * 13 12 11 42 42 H 0.97010 * 119.99935 * 19.98110 * 16 14 13 43 43 H 0.97001 * 119.99916 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.88139 * 300.43781 * 25 11 9 45 45 H 1.09001 * 109.88403 * 61.45017 * 25 11 9 46 46 H 1.07999 * 125.98933 * 179.80271 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 5.2857 3.0541 0.0011 7 6 6.0195 3.7340 -0.8944 8 6 7.3448 3.5930 -0.5349 9 6 8.5072 4.1731 -1.2320 10 8 8.3523 4.7679 -2.2812 11 7 9.7415 4.0441 -0.7064 12 6 10.9728 4.6488 -1.2464 13 6 11.9303 4.7468 -0.0298 14 6 11.6011 3.4340 0.7289 15 1 12.1486 2.5940 0.3016 16 7 11.8949 3.5733 2.1574 17 6 12.0723 2.4580 2.9319 18 1 11.9960 1.4757 2.4895 19 6 12.3503 2.5900 4.2854 20 7 12.5213 1.5180 5.0298 21 14 12.4816 4.2891 5.0507 22 1 11.1456 4.7175 5.5370 23 1 13.4329 4.2465 6.1901 24 1 12.9707 5.2538 4.0331 25 6 10.0840 3.2718 0.4968 26 6 7.3792 2.7837 0.6227 27 7 6.1515 2.4696 0.9322 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9768 0.8908 35 1 3.4230 3.4214 -0.8905 36 1 3.4221 3.4224 0.8895 37 1 5.6422 4.2908 -1.7393 38 1 11.4015 4.0107 -2.0191 39 1 10.7645 5.6415 -1.6455 40 1 11.7020 5.6194 0.5820 41 1 12.9709 4.7603 -0.3539 42 1 11.9638 4.4556 2.5546 43 1 12.7152 1.6102 5.9757 44 1 9.5343 3.6589 1.3547 45 1 9.8404 2.2204 0.3443 46 1 8.2664 2.4789 1.1579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186609778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = 24.558563 kcal Electronic energy + Delta-G solvation = -26708.091547 eV Core-core repulsion = 22828.647554 eV Total energy + Delta-G solvation = -3879.443992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48355 -39.44668 -38.51334 -37.24015 -34.39835 -34.12653 -31.88336 -31.57131 -30.64382 -30.04971 -28.52286 -27.76666 -24.46616 -23.89573 -23.23938 -22.82405 -21.35933 -21.01767 -20.18851 -19.31877 -17.72580 -17.58348 -16.84441 -16.83248 -16.16347 -16.00237 -15.60348 -15.25848 -14.70620 -14.56670 -14.21686 -14.13087 -13.85532 -13.61490 -13.16450 -12.97148 -12.86861 -12.80986 -12.66295 -12.38344 -12.30517 -12.10049 -11.81280 -11.64590 -11.59752 -11.17745 -11.02009 -10.91404 -10.76280 -10.50661 -10.12148 -10.08003 -9.73715 -9.67583 -9.66068 -9.04868 -8.80405 -8.31011 -7.42369 -5.86145 -3.24450 1.45292 2.02468 2.22824 3.24515 3.27818 3.32731 3.35622 3.41618 3.58587 4.21690 4.45073 4.51185 4.60845 4.63841 4.68137 4.79668 4.80584 4.92964 4.95134 5.06544 5.14057 5.15542 5.18182 5.23151 5.31459 5.44755 5.48530 5.50084 5.51552 5.63615 5.67682 5.69793 5.87872 5.96372 6.09401 6.22303 6.35313 6.37691 6.56319 6.60766 6.71643 6.72091 7.48940 7.78380 7.88458 8.32509 8.42310 9.09086 9.81408 9.99304 11.31331 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002796 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.688428 B =10011.056243 C =11787.826085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.390 6.390 4 C 0.052 3.948 5 C 0.136 3.864 6 N -0.365 5.365 7 C 0.126 3.874 8 C -0.285 4.285 9 C 0.609 3.391 10 O -0.564 6.564 11 N -0.610 5.610 12 C 0.114 3.886 13 C -0.144 4.144 14 C 0.177 3.823 15 H 0.075 0.925 16 N -0.738 5.738 17 C -0.254 4.254 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.928 5.928 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.067 3.933 26 C 0.079 3.921 27 N -0.296 5.296 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.187 0.813 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.365 0.635 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.395 1.627 -13.009 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.025 4.025 5 C 0.015 3.985 6 N -0.146 5.146 7 C -0.025 4.025 8 C -0.300 4.300 9 C 0.399 3.601 10 O -0.444 6.444 11 N -0.343 5.343 12 C -0.009 4.009 13 C -0.183 4.183 14 C 0.065 3.935 15 H 0.093 0.907 16 N -0.379 5.379 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.058 4.058 26 C -0.108 4.108 27 N -0.115 5.115 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.204 0.796 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -19.555 1.190 -12.626 23.307 hybrid contribution 0.754 1.256 0.257 1.487 sum -18.801 2.445 -12.369 22.638 Atomic orbital electron populations 1.21751 0.93421 1.02478 1.03211 1.22501 0.95658 0.83011 1.00554 1.87771 1.20048 1.27385 1.95644 1.22602 0.81780 0.95900 1.02237 1.21446 0.74222 0.97344 1.05527 1.48384 1.06569 1.38727 1.20871 1.22901 0.90718 0.94739 0.94100 1.20216 0.93248 1.13351 1.03152 1.16844 0.80995 0.78859 0.83402 1.90728 1.85411 1.45137 1.23154 1.48254 1.06307 1.50972 1.28739 1.22188 0.83987 0.98473 0.96270 1.23149 0.99278 0.99511 0.96358 1.21177 0.90956 0.95819 0.85547 0.90660 1.42737 1.85530 1.05736 1.03941 1.19067 1.41880 0.87050 0.90399 0.88898 1.24681 1.01201 0.96486 0.96232 1.69696 1.54361 1.27035 1.06375 0.86592 0.77828 0.85209 0.79140 1.20957 1.21659 1.20209 1.23508 1.00876 0.95068 0.86374 1.25070 0.96225 0.94811 0.94743 1.77269 1.00475 1.20747 1.13046 0.91708 0.91802 0.90878 0.93174 0.92947 0.92619 0.91286 0.87493 0.88376 0.79580 0.91443 0.90820 0.90764 0.89768 0.80197 0.92890 0.90412 0.91461 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.15 0.38 -0.47 16 2 C 0.06 0.42 6.66 37.15 0.25 0.67 16 3 O -0.39 -3.50 10.34 -35.23 -0.36 -3.87 16 4 C 0.05 0.46 6.11 37.16 0.23 0.69 16 5 C 0.14 1.15 6.86 -4.04 -0.03 1.12 16 6 N -0.37 -4.29 3.65 -60.81 -0.22 -4.52 16 7 C 0.13 1.52 11.25 -16.56 -0.19 1.34 16 8 C -0.28 -4.18 6.09 -105.07 -0.64 -4.82 16 9 C 0.61 9.97 7.84 -12.52 -0.10 9.87 16 10 O -0.56 -10.42 17.19 5.28 0.09 -10.33 16 11 N -0.61 -9.43 3.32 -171.65 -0.57 -10.00 16 12 C 0.11 1.56 6.90 -2.41 -0.02 1.54 16 13 C -0.14 -2.02 6.71 -24.46 -0.16 -2.19 16 14 C 0.18 3.02 3.59 -66.09 -0.24 2.79 16 15 H 0.08 1.31 8.12 -51.93 -0.42 0.88 16 16 N -0.74 -15.86 4.98 -51.65 -0.26 -16.12 16 17 C -0.25 -6.64 10.46 -15.06 -0.16 -6.79 16 18 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -27.96 13.97 55.49 0.78 -27.19 16 21 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 25 C 0.07 1.07 4.75 -3.07 -0.01 1.06 16 26 C 0.08 1.17 10.44 -16.98 -0.18 1.00 16 27 N -0.30 -4.33 12.33 30.86 0.38 -3.95 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 40 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.36 7.81 5.57 -40.82 -0.23 7.58 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 1.32 6.63 -51.93 -0.34 0.98 16 45 H 0.07 1.04 7.08 -51.93 -0.37 0.67 16 46 H 0.21 3.06 4.51 -52.49 -0.24 2.82 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -33.15 379.61 -7.21 -40.37 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.09 Total: 7.46 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.96 Total: 6.00 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.11 Total: -61.77 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.27 Total: -14.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.15 -7.21 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186609778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.925 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds