Wall clock time and date at job start Fri Apr 10 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47037 * 2 1 4 4 C 1.42904 * 113.99901 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47027 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47007 * 179.97438 * 5 4 3 7 7 C 1.34261 * 125.74912 * 124.71915 * 6 5 4 8 8 C 1.38046 * 107.41373 * 179.90491 * 7 6 5 9 9 C 1.47429 * 126.41292 * 180.10406 * 8 7 6 10 10 O 1.21600 * 120.00253 * 354.55828 * 9 8 7 11 11 N 1.34781 * 120.00029 * 174.56035 * 9 8 7 12 12 C 1.47424 * 125.64920 * 184.37748 * 11 9 8 13 13 C 1.55130 * 104.72253 * 155.81753 * 12 11 9 14 14 C 1.55162 * 101.48338 * 37.29611 * 13 12 11 15 15 H 1.08999 * 110.71297 * 82.69784 * 14 13 12 16 16 N 1.46497 * 110.71990 * 205.96629 * 14 13 12 17 17 C 1.36934 * 120.00257 * 199.97769 * 16 14 13 18 18 H 1.08004 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00422 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00328 * 180.02562 * 19 17 16 21 21 Si 1.86810 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47173 * 89.99881 * 21 19 17 23 23 H 1.48497 * 109.46797 * 209.99969 * 21 19 17 24 24 H 1.48504 * 109.46925 * 330.00195 * 21 19 17 25 25 C 1.47019 * 125.64650 * 4.69086 * 11 9 8 26 26 C 1.41289 * 107.17320 * 0.35889 * 8 7 6 27 27 N 1.30449 * 108.02026 * 359.77425 * 26 8 7 28 28 H 1.09000 * 109.47349 * 299.99925 * 1 2 3 29 29 H 1.08994 * 109.47292 * 60.00400 * 1 2 3 30 30 H 1.09004 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47821 * 239.99879 * 2 1 3 32 32 H 1.09007 * 109.47418 * 119.99892 * 2 1 3 33 33 H 1.08998 * 109.47361 * 59.99891 * 4 3 2 34 34 H 1.08999 * 109.47343 * 299.99632 * 4 3 2 35 35 H 1.08991 * 109.47322 * 300.00009 * 5 4 3 36 36 H 1.09009 * 109.46672 * 60.00383 * 5 4 3 37 37 H 1.07997 * 126.29867 * 0.02562 * 7 6 5 38 38 H 1.08995 * 110.36964 * 274.75247 * 12 11 9 39 39 H 1.09003 * 110.36500 * 37.07365 * 12 11 9 40 40 H 1.08997 * 111.19142 * 279.19523 * 13 12 11 41 41 H 1.08998 * 110.90675 * 155.27997 * 13 12 11 42 42 H 0.97010 * 119.99935 * 19.98110 * 16 14 13 43 43 H 0.97001 * 119.99916 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.88139 * 300.43781 * 25 11 9 45 45 H 1.09001 * 109.88403 * 61.45017 * 25 11 9 46 46 H 1.07999 * 125.98933 * 179.80271 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 5.2857 3.0541 0.0011 7 6 6.0195 3.7340 -0.8944 8 6 7.3448 3.5930 -0.5349 9 6 8.5072 4.1731 -1.2320 10 8 8.3523 4.7679 -2.2812 11 7 9.7415 4.0441 -0.7064 12 6 10.9728 4.6488 -1.2464 13 6 11.9303 4.7468 -0.0298 14 6 11.6011 3.4340 0.7289 15 1 12.1486 2.5940 0.3016 16 7 11.8949 3.5733 2.1574 17 6 12.0723 2.4580 2.9319 18 1 11.9960 1.4757 2.4895 19 6 12.3503 2.5900 4.2854 20 7 12.5213 1.5180 5.0298 21 14 12.4816 4.2891 5.0507 22 1 11.1456 4.7175 5.5370 23 1 13.4329 4.2465 6.1901 24 1 12.9707 5.2538 4.0331 25 6 10.0840 3.2718 0.4968 26 6 7.3792 2.7837 0.6227 27 7 6.1515 2.4696 0.9322 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9768 0.8908 35 1 3.4230 3.4214 -0.8905 36 1 3.4221 3.4224 0.8895 37 1 5.6422 4.2908 -1.7393 38 1 11.4015 4.0107 -2.0191 39 1 10.7645 5.6415 -1.6455 40 1 11.7020 5.6194 0.5820 41 1 12.9709 4.7603 -0.3539 42 1 11.9638 4.4556 2.5546 43 1 12.7152 1.6102 5.9757 44 1 9.5343 3.6589 1.3547 45 1 9.8404 2.2204 0.3443 46 1 8.2664 2.4789 1.1579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186609778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:14 Heat of formation + Delta-G solvation = 1.636882 kcal Electronic energy + Delta-G solvation = -26709.085505 eV Core-core repulsion = 22828.647554 eV Total energy + Delta-G solvation = -3880.437951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.52669 -40.67776 -39.18647 -38.59677 -35.92345 -35.18188 -33.48161 -32.43849 -31.91388 -31.10744 -29.65166 -29.01119 -25.92821 -24.88183 -24.27851 -23.75857 -22.49134 -22.15214 -21.49003 -20.47923 -19.60144 -18.53910 -17.76387 -17.55159 -17.43606 -17.09709 -16.54865 -16.38049 -16.23151 -15.59716 -15.51842 -15.04552 -15.02614 -14.83029 -14.65041 -14.37806 -14.10464 -13.73571 -13.63093 -13.34241 -13.30468 -13.14258 -12.96912 -12.93413 -12.39357 -12.35530 -12.23785 -12.18542 -12.13484 -11.96802 -11.79235 -11.55046 -11.06182 -10.90131 -10.73512 -10.68220 -9.91408 -9.52439 -9.34214 -7.98956 -5.33932 0.44942 1.06582 1.16873 1.42152 1.44385 1.51332 2.05524 2.38370 2.51498 2.60307 3.31299 3.34050 3.56404 3.74380 3.75718 3.79823 3.85856 3.92462 4.02514 4.10761 4.16159 4.24360 4.32545 4.33049 4.38509 4.44123 4.46764 4.55532 4.57363 4.66099 4.80817 4.83575 4.87211 4.99393 5.01792 5.14746 5.22399 5.24017 5.33082 5.44913 5.76166 5.81668 6.03972 6.24670 6.43222 6.53862 7.09850 7.18361 7.84542 8.02767 9.21811 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002796 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.688428 B =10011.056243 C =11787.826085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.398 6.398 4 C 0.058 3.942 5 C 0.131 3.869 6 N -0.356 5.356 7 C 0.146 3.854 8 C -0.312 4.312 9 C 0.608 3.392 10 O -0.587 6.587 11 N -0.611 5.611 12 C 0.113 3.887 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.074 0.926 16 N -0.739 5.739 17 C -0.228 4.228 18 H 0.065 0.935 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.947 3.053 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.247 1.247 25 C 0.081 3.919 26 C 0.072 3.928 27 N -0.322 5.322 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.220 0.780 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.368 0.632 43 H 0.257 0.743 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 3.478 -14.757 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.318 6.318 4 C -0.020 4.020 5 C 0.011 3.989 6 N -0.135 5.135 7 C -0.006 4.006 8 C -0.327 4.327 9 C 0.400 3.600 10 O -0.470 6.470 11 N -0.343 5.343 12 C -0.009 4.009 13 C -0.168 4.168 14 C 0.057 3.943 15 H 0.092 0.908 16 N -0.382 5.382 17 C -0.359 4.359 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.631 5.631 21 Si 0.775 3.225 22 H -0.210 1.210 23 H -0.228 1.228 24 H -0.171 1.171 25 C -0.044 4.044 26 C -0.115 4.115 27 N -0.141 5.141 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.236 0.764 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.202 0.798 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -20.766 3.062 -14.424 25.469 hybrid contribution 1.004 0.589 0.687 1.352 sum -19.762 3.651 -13.737 24.343 Atomic orbital electron populations 1.21763 0.92244 1.03533 1.03026 1.22699 0.96663 0.82302 1.00892 1.87757 1.19805 1.28539 1.95661 1.22478 0.81928 0.96101 1.01449 1.21765 0.72211 0.97410 1.07488 1.48603 1.07526 1.37572 1.19843 1.23365 0.89794 0.93428 0.94059 1.20237 0.93981 1.14751 1.03706 1.17036 0.81415 0.78470 0.83128 1.90707 1.85740 1.46426 1.24118 1.48281 1.06854 1.50806 1.28379 1.22313 0.83132 0.99082 0.96343 1.23081 1.00644 0.97332 0.95773 1.21381 0.91548 0.97897 0.83471 0.90847 1.42687 1.85647 1.04435 1.05407 1.19033 1.38892 0.87437 0.90570 0.91688 1.25436 1.02440 1.00197 0.97046 1.69871 1.57231 1.29576 1.06456 0.85527 0.77405 0.81212 0.78349 1.20989 1.22759 1.17140 1.23178 0.99611 0.95196 0.86465 1.24939 0.96248 0.95245 0.95071 1.77212 1.00767 1.21737 1.14424 0.92133 0.91694 0.89253 0.92425 0.93071 0.92471 0.93083 0.84109 0.87856 0.76357 0.90090 0.90129 0.90577 0.87662 0.79800 0.93461 0.91481 0.91450 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.40 -6.63 10.34 -148.98 -1.54 -8.17 16 4 C 0.06 0.96 6.11 71.98 0.44 1.40 16 5 C 0.13 1.92 6.86 86.38 0.59 2.51 16 6 N -0.36 -7.75 3.65 -346.30 -1.26 -9.01 16 7 C 0.15 3.19 11.25 84.28 0.95 4.13 16 8 C -0.31 -8.82 6.09 -20.15 -0.12 -8.95 16 9 C 0.61 19.13 7.84 86.66 0.68 19.81 16 10 O -0.59 -20.71 17.19 -4.03 -0.07 -20.78 16 11 N -0.61 -18.06 3.32 -815.22 -2.71 -20.77 16 12 C 0.11 2.84 6.90 86.93 0.60 3.44 16 13 C -0.13 -3.30 6.71 32.07 0.22 -3.08 16 14 C 0.17 5.51 3.59 46.18 0.17 5.67 16 15 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 16 N -0.74 -31.01 4.98 -317.33 -1.58 -32.59 16 17 C -0.23 -12.03 10.46 84.03 0.88 -11.15 16 18 H 0.07 3.74 8.06 -2.91 -0.02 3.71 16 19 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 20 N -0.98 -60.92 13.97 21.65 0.30 -60.62 16 21 Si 0.95 43.65 27.74 68.60 1.90 45.55 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 25 C 0.08 2.54 4.75 86.73 0.41 2.96 16 26 C 0.07 2.14 10.44 85.65 0.89 3.04 16 27 N -0.32 -9.30 12.33 -56.28 -0.69 -9.99 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.14 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.10 1.46 8.14 -2.38 -0.02 1.45 16 37 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 41 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.37 14.97 5.57 -92.70 -0.52 14.46 16 43 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.07 2.27 6.63 -2.39 -0.02 2.26 16 45 H 0.07 2.10 7.08 -2.39 -0.02 2.08 16 46 H 0.20 6.03 4.51 -2.91 -0.01 6.02 16 Total: -1.00 -72.23 379.61 2.15 -70.08 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.41 Total: 28.98 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 7.39 Total: 17.32 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -5.95 Total: -132.99 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.61 Total: -28.95 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.90 Total: 45.55 kcal Total: -72.23 2.15 -70.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186609778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.720 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds