Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 119.99689 * 2 1 4 4 H 1.08004 * 120.00020 * 203.37744 * 3 2 1 5 5 C 1.38808 * 120.00292 * 23.37989 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.37587 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.38117 * 5 3 2 8 8 H 1.48498 * 109.47221 * 89.99923 * 7 5 3 9 9 H 1.48502 * 109.47199 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.47312 * 329.99532 * 7 5 3 11 11 C 1.46504 * 120.00111 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.63968 * 180.70578 * 11 2 1 13 13 C 1.55156 * 110.72036 * 57.55883 * 11 2 1 14 14 C 1.54907 * 101.58396 * 206.13489 * 13 11 2 15 15 N 1.47424 * 104.83138 * 37.01322 * 14 13 11 16 16 C 1.34775 * 125.65173 * 155.83556 * 15 14 13 17 17 O 1.21277 * 120.00451 * 180.02562 * 16 15 14 18 18 C 1.50707 * 119.99738 * 0.02699 * 16 15 14 19 19 O 1.42896 * 109.46999 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99557 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.46986 * 179.97438 * 20 19 18 22 22 N 1.30508 * 125.64931 * 269.69214 * 21 20 19 23 23 C 1.34130 * 109.25728 * 179.89145 * 22 21 20 24 24 C 1.34670 * 108.01610 * 0.36764 * 23 22 21 25 25 N 1.35045 * 125.65044 * 89.99526 * 21 20 19 26 26 C 1.46492 * 126.39672 * 359.94654 * 25 21 20 27 27 C 1.47321 * 108.73601 * 335.71380 * 15 14 13 28 28 H 1.09001 * 109.47940 * 275.18363 * 1 2 3 29 29 H 1.09002 * 109.47387 * 35.19373 * 1 2 3 30 30 H 1.09004 * 109.46777 * 155.18671 * 1 2 3 31 31 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 32 32 H 1.09001 * 111.00357 * 324.21303 * 13 11 2 33 33 H 1.08999 * 111.00088 * 88.02390 * 13 11 2 34 34 H 1.08995 * 110.36745 * 155.85253 * 14 13 11 35 35 H 1.09004 * 110.36734 * 278.06343 * 14 13 11 36 36 H 1.09002 * 109.46850 * 299.99998 * 18 16 15 37 37 H 1.08998 * 109.46895 * 59.99669 * 18 16 15 38 38 H 1.09004 * 109.47475 * 299.99352 * 20 19 18 39 39 H 1.08995 * 109.47488 * 59.99824 * 20 19 18 40 40 H 1.07995 * 125.99339 * 180.18336 * 23 22 21 41 41 H 1.08009 * 126.58670 * 179.81119 * 24 23 22 42 42 H 1.09002 * 109.47276 * 90.00167 * 26 25 21 43 43 H 1.09008 * 109.47151 * 209.99695 * 26 25 21 44 44 H 1.08993 * 109.47348 * 329.99862 * 26 25 21 45 45 H 1.08998 * 110.06882 * 241.87096 * 27 15 14 46 46 H 1.09005 * 109.84851 * 120.60918 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1631 1.2243 -0.3711 5 6 1.5410 2.3387 0.4770 6 7 0.4327 2.2543 1.1821 7 14 2.2948 4.0097 0.1182 8 1 1.7397 4.5406 -1.1527 9 1 1.9756 4.9451 1.2267 10 1 3.7683 3.8721 -0.0044 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0915 0.0131 13 6 1.7978 -2.1339 -1.2238 14 6 2.0902 -3.5634 -0.7033 15 7 1.7030 -3.5337 0.7188 16 6 1.3453 -4.6024 1.4580 17 8 1.0443 -4.4599 2.6242 18 6 1.3193 -5.9746 0.8354 19 8 0.9111 -6.9335 1.8130 20 6 0.8525 -8.2745 1.3226 21 6 0.4141 -9.1961 2.4314 22 7 1.2059 -9.8119 3.2664 23 6 0.4698 -10.5433 4.1164 24 6 -0.8268 -10.3806 3.7908 25 7 -0.8627 -9.5261 2.7220 26 6 -2.0622 -9.0569 2.0241 27 6 1.7743 -2.1430 1.1998 28 1 -0.3635 0.0928 1.0234 29 1 -0.3634 0.8398 -0.5923 30 1 -0.3633 -0.9328 -0.4313 31 1 0.0077 3.0599 1.5157 32 1 0.7406 -2.0126 -1.4595 33 1 2.4183 -1.8978 -2.0882 34 1 1.4899 -4.2944 -1.2448 35 1 3.1507 -3.7945 -0.8047 36 1 0.6156 -5.9826 0.0030 37 1 2.3153 -6.2273 0.4717 38 1 0.1392 -8.3299 0.5003 39 1 1.8386 -8.5755 0.9690 40 1 0.8504 -11.1574 4.9191 41 1 -1.6753 -10.8364 4.2796 42 1 -2.2991 -9.7406 1.2089 43 1 -2.8983 -9.0209 2.7226 44 1 -1.8818 -8.0602 1.6216 45 1 2.5125 -2.0606 1.9975 46 1 0.7964 -1.8263 1.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190846357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = 27.241361 kcal Electronic energy + Delta-G solvation = -26885.148539 eV Core-core repulsion = 23005.820882 eV Total energy + Delta-G solvation = -3879.327657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33262 -39.85537 -38.14869 -37.02654 -34.80527 -34.30183 -31.81545 -31.21703 -29.85675 -28.88210 -27.60236 -27.08318 -26.08345 -25.79516 -23.34833 -22.39197 -21.67074 -20.33892 -19.43225 -19.10036 -17.67665 -17.19651 -17.05414 -16.62681 -16.46989 -15.83716 -15.56160 -15.16727 -14.87993 -14.64255 -14.06255 -13.91245 -13.58755 -13.38583 -13.31977 -13.22400 -13.03800 -12.79958 -12.55054 -12.30723 -12.18739 -11.95914 -11.82856 -11.55139 -10.95108 -10.83432 -10.60104 -10.50957 -10.30815 -10.23411 -10.06433 -9.91267 -9.88287 -9.86879 -9.57851 -8.72834 -8.60512 -8.34281 -6.84118 -5.78739 -3.27254 1.59980 2.42897 2.64882 2.78623 3.05889 3.35558 3.41901 3.43616 3.76814 4.26823 4.34224 4.43400 4.45326 4.62799 4.72701 4.75690 4.87559 4.92847 4.96243 5.02907 5.05529 5.18457 5.23277 5.27966 5.46803 5.47337 5.55745 5.74019 5.85796 5.96220 5.96304 6.30900 6.33013 6.45100 6.48435 6.58699 6.72135 6.79066 6.83621 6.85828 7.28148 7.68003 7.75263 7.75374 7.83385 8.31703 8.38343 9.15328 9.77885 10.27023 11.25390 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030751 B = 0.002108 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.320241 B =13279.177122 C =13480.700819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.613 5.613 16 C 0.523 3.477 17 O -0.523 6.523 18 C 0.050 3.950 19 O -0.357 6.357 20 C 0.148 3.852 21 C 0.204 3.796 22 N -0.471 5.471 23 C -0.028 4.028 24 C -0.051 4.051 25 N -0.450 5.450 26 C 0.068 3.932 27 C 0.090 3.910 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -24.528 -4.837 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.025 4.025 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.398 6.398 18 C -0.030 4.030 19 O -0.274 6.274 20 C 0.070 3.930 21 C -0.058 4.058 22 N -0.191 5.191 23 C -0.177 4.177 24 C -0.185 4.185 25 N -0.133 5.133 26 C -0.075 4.075 27 C -0.034 4.034 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.190 0.810 41 H 0.194 0.806 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.016 -24.151 -3.963 24.660 hybrid contribution -0.665 0.744 -0.266 1.033 sum -3.681 -23.407 -4.229 24.070 Atomic orbital electron populations 1.20799 0.82528 0.95570 0.99694 1.43932 1.01855 0.99924 1.84812 1.19214 0.98925 0.85189 1.35923 0.91128 1.25084 0.98031 0.98747 0.97571 1.70077 1.20448 1.27514 1.36532 0.86217 0.78740 0.83897 0.77421 1.21436 1.21731 1.20384 1.21375 0.96494 0.85920 0.90056 0.90240 1.23354 1.02838 0.92963 1.00145 1.22366 0.99688 0.99270 0.81148 1.48570 1.66764 1.07834 1.11822 1.19727 0.78178 0.84709 0.86414 1.90747 1.47479 1.85336 1.16245 1.22227 1.01115 0.88079 0.91530 1.88108 1.89040 1.14528 1.35689 1.20500 1.01484 0.80643 0.90388 1.22611 0.79908 1.02109 1.01140 1.70219 1.33178 1.10580 1.05121 1.22348 0.89722 1.03792 1.01853 1.22777 1.00688 1.01150 0.93852 1.45277 1.07662 1.35177 1.25185 1.22123 0.85796 1.01550 0.97989 1.22980 1.02594 0.78428 0.99424 0.94868 0.93970 0.97914 0.93568 0.90494 0.90303 0.91458 0.91383 0.90296 0.89946 0.91556 0.89632 0.81027 0.80595 0.90333 0.89255 0.89025 0.91999 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 7.63 59.85 0.46 4.23 16 2 N -0.58 -14.00 2.93 -171.39 -0.50 -14.50 16 3 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.00 0.14 5.07 -17.43 -0.09 0.05 16 6 N -0.90 -25.98 10.81 55.49 0.60 -25.38 16 7 Si 0.91 21.41 29.58 -169.99 -5.03 16.39 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.17 3.29 3.43 -66.09 -0.23 3.07 16 12 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 13 C -0.15 -2.25 6.60 -24.58 -0.16 -2.41 16 14 C 0.10 1.17 6.69 -2.53 -0.02 1.16 16 15 N -0.61 -9.75 3.33 -170.28 -0.57 -10.32 16 16 C 0.52 8.73 7.93 -10.98 -0.09 8.64 16 17 O -0.52 -11.42 16.83 -14.35 -0.24 -11.66 16 18 C 0.05 0.58 5.42 36.01 0.20 0.77 16 19 O -0.36 -4.91 9.86 -55.14 -0.54 -5.45 16 20 C 0.15 1.47 6.02 36.01 0.22 1.69 16 21 C 0.20 2.48 7.53 -155.41 -1.17 1.31 16 22 N -0.47 -6.57 11.25 -10.81 -0.12 -6.69 16 23 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 24 C -0.05 -0.46 11.58 -16.56 -0.19 -0.65 16 25 N -0.45 -4.38 3.15 -121.28 -0.38 -4.77 16 26 C 0.07 0.39 10.79 59.84 0.65 1.04 16 27 C 0.09 1.74 6.53 -2.90 -0.02 1.72 16 28 H 0.03 0.88 7.24 -51.93 -0.38 0.50 16 29 H 0.04 1.07 7.41 -51.93 -0.38 0.69 16 30 H 0.00 0.05 6.30 -51.93 -0.33 -0.28 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.08 1.21 6.30 -51.93 -0.33 0.88 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.60 7.47 -51.93 -0.39 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.43 7.71 -51.93 -0.40 0.03 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.09 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.65 6.95 -51.93 -0.36 1.29 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -36.96 377.84 -9.03 -45.99 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.13 Total: -2.27 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -0.80 Total: 12.97 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.97 Total: -61.66 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.79 Total: -17.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.96 -9.03 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190846357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.228 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds