Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 119.99689 * 2 1 4 4 H 1.08004 * 120.00020 * 203.37744 * 3 2 1 5 5 C 1.38808 * 120.00292 * 23.37989 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.37587 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.38117 * 5 3 2 8 8 H 1.48498 * 109.47221 * 89.99923 * 7 5 3 9 9 H 1.48502 * 109.47199 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.47312 * 329.99532 * 7 5 3 11 11 C 1.46504 * 120.00111 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.63968 * 180.70578 * 11 2 1 13 13 C 1.55156 * 110.72036 * 57.55883 * 11 2 1 14 14 C 1.54907 * 101.58396 * 206.13489 * 13 11 2 15 15 N 1.47424 * 104.83138 * 37.01322 * 14 13 11 16 16 C 1.34775 * 125.65173 * 155.83556 * 15 14 13 17 17 O 1.21277 * 120.00451 * 180.02562 * 16 15 14 18 18 C 1.50707 * 119.99738 * 0.02699 * 16 15 14 19 19 O 1.42896 * 109.46999 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99557 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.46986 * 179.97438 * 20 19 18 22 22 N 1.30508 * 125.64931 * 269.69214 * 21 20 19 23 23 C 1.34130 * 109.25728 * 179.89145 * 22 21 20 24 24 C 1.34670 * 108.01610 * 0.36764 * 23 22 21 25 25 N 1.35045 * 125.65044 * 89.99526 * 21 20 19 26 26 C 1.46492 * 126.39672 * 359.94654 * 25 21 20 27 27 C 1.47321 * 108.73601 * 335.71380 * 15 14 13 28 28 H 1.09001 * 109.47940 * 275.18363 * 1 2 3 29 29 H 1.09002 * 109.47387 * 35.19373 * 1 2 3 30 30 H 1.09004 * 109.46777 * 155.18671 * 1 2 3 31 31 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 32 32 H 1.09001 * 111.00357 * 324.21303 * 13 11 2 33 33 H 1.08999 * 111.00088 * 88.02390 * 13 11 2 34 34 H 1.08995 * 110.36745 * 155.85253 * 14 13 11 35 35 H 1.09004 * 110.36734 * 278.06343 * 14 13 11 36 36 H 1.09002 * 109.46850 * 299.99998 * 18 16 15 37 37 H 1.08998 * 109.46895 * 59.99669 * 18 16 15 38 38 H 1.09004 * 109.47475 * 299.99352 * 20 19 18 39 39 H 1.08995 * 109.47488 * 59.99824 * 20 19 18 40 40 H 1.07995 * 125.99339 * 180.18336 * 23 22 21 41 41 H 1.08009 * 126.58670 * 179.81119 * 24 23 22 42 42 H 1.09002 * 109.47276 * 90.00167 * 26 25 21 43 43 H 1.09008 * 109.47151 * 209.99695 * 26 25 21 44 44 H 1.08993 * 109.47348 * 329.99862 * 26 25 21 45 45 H 1.08998 * 110.06882 * 241.87096 * 27 15 14 46 46 H 1.09005 * 109.84851 * 120.60918 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1631 1.2243 -0.3711 5 6 1.5410 2.3387 0.4770 6 7 0.4327 2.2543 1.1821 7 14 2.2948 4.0097 0.1182 8 1 1.7397 4.5406 -1.1527 9 1 1.9756 4.9451 1.2267 10 1 3.7683 3.8721 -0.0044 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0915 0.0131 13 6 1.7978 -2.1339 -1.2238 14 6 2.0902 -3.5634 -0.7033 15 7 1.7030 -3.5337 0.7188 16 6 1.3453 -4.6024 1.4580 17 8 1.0443 -4.4599 2.6242 18 6 1.3193 -5.9746 0.8354 19 8 0.9111 -6.9335 1.8130 20 6 0.8525 -8.2745 1.3226 21 6 0.4141 -9.1961 2.4314 22 7 1.2059 -9.8119 3.2664 23 6 0.4698 -10.5433 4.1164 24 6 -0.8268 -10.3806 3.7908 25 7 -0.8627 -9.5261 2.7220 26 6 -2.0622 -9.0569 2.0241 27 6 1.7743 -2.1430 1.1998 28 1 -0.3635 0.0928 1.0234 29 1 -0.3634 0.8398 -0.5923 30 1 -0.3633 -0.9328 -0.4313 31 1 0.0077 3.0599 1.5157 32 1 0.7406 -2.0126 -1.4595 33 1 2.4183 -1.8978 -2.0882 34 1 1.4899 -4.2944 -1.2448 35 1 3.1507 -3.7945 -0.8047 36 1 0.6156 -5.9826 0.0030 37 1 2.3153 -6.2273 0.4717 38 1 0.1392 -8.3299 0.5003 39 1 1.8386 -8.5755 0.9690 40 1 0.8504 -11.1574 4.9191 41 1 -1.6753 -10.8364 4.2796 42 1 -2.2991 -9.7406 1.2089 43 1 -2.8983 -9.0209 2.7226 44 1 -1.8818 -8.0602 1.6216 45 1 2.5125 -2.0606 1.9975 46 1 0.7964 -1.8263 1.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190846357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 1.889783 kcal Electronic energy + Delta-G solvation = -26886.247866 eV Core-core repulsion = 23005.820882 eV Total energy + Delta-G solvation = -3880.426984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.04814 -41.13201 -39.28832 -38.30038 -36.53367 -34.96520 -33.54479 -32.08256 -31.32897 -30.06758 -28.56136 -28.07359 -27.86348 -26.63106 -24.94910 -23.79084 -22.38512 -21.11254 -20.92370 -20.35645 -18.96374 -18.54553 -17.96848 -17.70950 -17.53152 -17.07114 -16.65865 -16.31203 -16.15753 -15.69512 -15.26580 -15.03854 -14.93515 -14.73302 -14.43509 -14.27203 -14.02170 -13.77334 -13.63619 -13.48345 -13.34386 -13.13465 -13.06044 -12.79082 -12.76216 -12.51773 -12.39343 -12.22680 -12.08831 -11.80792 -11.41452 -11.03824 -10.92336 -10.82844 -10.64391 -10.59604 -9.68253 -9.46474 -8.81921 -7.84297 -5.35214 0.86325 1.48073 1.48341 1.54856 1.57771 1.64176 1.89797 2.10171 2.50677 2.95390 3.27380 3.42534 3.58748 3.67425 3.81657 3.85765 3.95510 4.06938 4.14729 4.22255 4.25639 4.31193 4.37717 4.39787 4.40564 4.49642 4.55772 4.67373 4.69554 4.77641 4.80195 4.90721 5.04219 5.19341 5.20138 5.27731 5.32022 5.45552 5.64768 5.68184 5.78681 5.93103 6.18239 6.30731 6.54624 7.07802 7.10454 7.13525 7.82970 8.27825 9.18378 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030751 B = 0.002108 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.320241 B =13279.177122 C =13480.700819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.265 1.265 11 C 0.164 3.836 12 H 0.082 0.918 13 C -0.139 4.139 14 C 0.102 3.898 15 N -0.611 5.611 16 C 0.513 3.487 17 O -0.591 6.591 18 C 0.061 3.939 19 O -0.398 6.398 20 C 0.149 3.851 21 C 0.176 3.824 22 N -0.518 5.518 23 C -0.062 4.062 24 C -0.041 4.041 25 N -0.451 5.451 26 C 0.061 3.939 27 C 0.099 3.901 28 H -0.006 1.006 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.247 0.753 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.186 0.814 41 H 0.213 0.787 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -26.817 -7.890 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.210 1.210 9 H -0.228 1.228 10 H -0.189 1.189 11 C 0.055 3.945 12 H 0.101 0.899 13 C -0.179 4.179 14 C -0.019 4.019 15 N -0.346 5.346 16 C 0.303 3.697 17 O -0.471 6.471 18 C -0.018 4.018 19 O -0.316 6.316 20 C 0.071 3.929 21 C -0.086 4.086 22 N -0.239 5.239 23 C -0.210 4.210 24 C -0.175 4.175 25 N -0.134 5.134 26 C -0.080 4.080 27 C -0.027 4.027 28 H 0.013 0.987 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.203 0.797 41 H 0.230 0.770 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.057 0.943 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.688 -26.486 -7.095 27.552 hybrid contribution -0.756 1.354 0.727 1.712 sum -3.444 -25.133 -6.369 26.155 Atomic orbital electron populations 1.20448 0.83032 0.96031 0.97132 1.44139 1.01909 1.01157 1.85081 1.19626 0.99193 0.86261 1.34385 0.90231 1.25901 0.98822 1.02299 0.98091 1.70266 1.22187 1.27756 1.38413 0.85189 0.78592 0.79491 0.76689 1.21037 1.22796 1.18905 1.21610 0.96190 0.84592 0.92104 0.89948 1.23225 1.02677 0.93511 0.98475 1.22691 1.02491 0.98406 0.78355 1.48620 1.66305 1.06066 1.13621 1.20871 0.76400 0.86685 0.85734 1.90716 1.50421 1.86514 1.19422 1.22307 1.04297 0.84049 0.91153 1.88050 1.89528 1.16323 1.37704 1.20745 1.03188 0.78459 0.90483 1.23077 0.80833 1.02802 1.01868 1.70138 1.35148 1.12083 1.06576 1.22789 0.90821 1.04756 1.02632 1.23364 1.01078 0.99990 0.93080 1.45573 1.08073 1.34611 1.25133 1.22408 0.84671 1.01953 0.98952 1.22526 0.99619 0.81428 0.99090 0.98733 0.96365 0.94719 0.94344 0.91361 0.87898 0.86744 0.88360 0.85909 0.86468 0.87737 0.88643 0.79709 0.77017 0.87707 0.87799 0.89383 0.94278 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 7.63 127.77 0.98 9.75 16 2 N -0.60 -29.11 2.93 -696.14 -2.04 -31.15 16 3 C -0.26 -14.09 9.59 84.03 0.81 -13.29 16 4 H 0.08 4.01 7.86 -2.91 -0.02 3.99 16 5 C -0.06 -3.12 5.07 84.86 0.43 -2.69 16 6 N -0.94 -56.42 10.81 21.65 0.23 -56.19 16 7 Si 0.97 44.67 29.58 68.60 2.03 46.70 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 C 0.16 6.13 3.43 46.18 0.16 6.29 16 12 H 0.08 3.02 7.94 -2.39 -0.02 3.00 16 13 C -0.14 -3.60 6.60 31.98 0.21 -3.39 16 14 C 0.10 1.91 6.69 86.85 0.58 2.49 16 15 N -0.61 -18.30 3.33 -811.03 -2.70 -21.00 16 16 C 0.51 16.49 7.93 87.66 0.69 17.18 16 17 O -0.59 -26.67 16.83 16.02 0.27 -26.40 16 18 C 0.06 1.16 5.42 71.24 0.39 1.55 16 19 O -0.40 -10.19 9.86 -129.94 -1.28 -11.47 16 20 C 0.15 2.57 6.02 71.24 0.43 3.00 16 21 C 0.18 4.08 7.53 138.13 1.04 5.12 16 22 N -0.52 -14.52 11.25 -188.13 -2.12 -16.63 16 23 C -0.06 -1.36 11.87 83.52 0.99 -0.37 16 24 C -0.04 -0.67 11.58 83.09 0.96 0.29 16 25 N -0.45 -7.97 3.15 -537.60 -1.69 -9.67 16 26 C 0.06 0.53 10.79 127.77 1.38 1.91 16 27 C 0.10 3.92 6.53 86.67 0.57 4.48 16 28 H -0.01 -0.32 7.24 -2.39 -0.02 -0.34 16 29 H 0.02 0.94 7.41 -2.39 -0.02 0.92 16 30 H 0.03 1.44 6.30 -2.38 -0.02 1.42 16 31 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.07 1.91 6.30 -2.39 -0.02 1.90 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.11 1.21 7.47 -2.39 -0.02 1.19 16 35 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.12 1.28 7.85 -2.39 -0.02 1.26 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 0.92 7.71 -2.38 -0.02 0.90 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 41 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.09 0.86 7.66 -2.39 -0.02 0.84 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.03 1.62 6.95 -2.38 -0.02 1.60 16 Total: -1.00 -88.90 377.84 3.28 -85.62 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.97 Total: 7.86 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 9.61 Total: 32.34 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -8.32 Total: -134.64 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.01 Total: -37.87 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -88.90 3.28 -85.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190846357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.508 kcal (2) G-P(sol) polarization free energy of solvation -88.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds