Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99956 * 2 1 4 4 C 1.53007 * 109.46671 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46773 * 175.04193 * 4 3 2 6 6 C 1.34490 * 126.47535 * 262.06247 * 5 4 3 7 7 N 1.30859 * 109.16598 * 180.25628 * 6 5 4 8 8 C 1.33322 * 109.68647 * 359.76405 * 7 6 5 9 9 C 1.36667 * 107.78083 * 0.02562 * 8 7 6 10 10 C 1.46760 * 126.84257 * 179.97438 * 9 8 7 11 11 O 1.21680 * 120.00321 * 205.27160 * 10 9 8 12 12 N 1.34780 * 120.00167 * 25.27243 * 10 9 8 13 13 C 1.47076 * 120.88370 * 179.83147 * 12 10 9 14 14 C 1.53242 * 108.51967 * 231.16035 * 13 12 10 15 15 N 1.46894 * 109.34059 * 306.16754 * 14 13 12 16 16 C 1.46899 * 111.00348 * 187.25488 * 15 14 13 17 17 C 1.50704 * 109.46828 * 65.69553 * 16 15 14 18 18 H 1.07996 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99799 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00000 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99824 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46880 * 90.00746 * 21 19 17 23 23 H 1.48498 * 109.46804 * 210.00088 * 21 19 17 24 24 H 1.48497 * 109.47087 * 330.00420 * 21 19 17 25 25 C 1.46904 * 111.26799 * 63.10351 * 15 14 13 26 26 C 1.47076 * 120.88083 * 359.80087 * 12 10 9 27 27 H 1.08993 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46988 * 300.00389 * 1 2 3 29 29 H 1.09003 * 109.46690 * 60.00243 * 1 2 3 30 30 H 1.08992 * 109.47276 * 60.00320 * 3 2 1 31 31 H 1.08994 * 109.47243 * 299.99856 * 3 2 1 32 32 H 1.09000 * 109.47066 * 55.04460 * 4 3 2 33 33 H 1.08999 * 109.47137 * 295.03806 * 4 3 2 34 34 H 1.08003 * 125.41894 * 0.05850 * 6 5 4 35 35 H 1.07996 * 126.10727 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.62948 * 350.86666 * 13 12 10 37 37 H 1.08997 * 109.63627 * 111.44539 * 13 12 10 38 38 H 1.09000 * 109.49314 * 66.13139 * 14 13 12 39 39 H 1.09000 * 109.48939 * 186.20724 * 14 13 12 40 40 H 1.08992 * 109.47603 * 185.69864 * 16 15 14 41 41 H 1.09004 * 109.46887 * 305.70093 * 16 15 14 42 42 H 0.97004 * 119.99307 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49060 * 176.93795 * 25 15 14 44 44 H 1.08991 * 109.48940 * 56.85832 * 25 15 14 45 45 H 1.08998 * 109.63146 * 248.55120 * 26 12 10 46 46 H 1.09003 * 109.62633 * 9.13138 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1311 2.5177 -0.1187 6 6 4.5856 3.0922 -1.2466 7 7 5.0518 4.2820 -0.9649 8 6 4.9134 4.5214 0.3394 9 6 4.3299 3.4230 0.9057 10 6 3.9874 3.2397 2.3209 11 8 3.9102 2.1188 2.7880 12 7 3.7583 4.3130 3.1034 13 6 3.4102 4.1516 4.5232 14 6 2.1458 4.9685 4.8101 15 7 2.3540 6.3561 4.3755 16 6 1.2327 7.2109 4.7879 17 6 1.1958 7.3001 6.2918 18 1 1.9319 6.7748 6.8822 19 6 0.2223 8.0525 6.9141 20 7 0.1904 8.1308 8.2265 21 14 -1.0506 8.9617 5.8929 22 1 -2.2253 8.0815 5.6679 23 1 -1.4807 10.1865 6.6141 24 1 -0.4576 9.3399 4.5850 25 6 2.5689 6.4334 2.9243 26 6 3.8506 5.6766 2.5602 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 0.8899 31 1 1.6887 1.8463 -0.8899 32 1 3.8515 0.5687 -0.8414 33 1 3.8630 0.7224 0.9319 34 1 4.5714 2.6418 -2.2281 35 1 5.2103 5.4221 0.8561 36 1 3.2226 3.0994 4.7369 37 1 4.2291 4.5140 5.1446 38 1 1.3042 4.5393 4.2663 39 1 1.9357 4.9499 5.8795 40 1 1.3624 8.2082 4.3678 41 1 0.2976 6.7831 4.4263 42 1 -0.4944 8.6604 8.6642 43 1 2.6657 7.4773 2.6261 44 1 1.7215 5.9839 2.4068 45 1 4.7119 6.1857 2.9928 46 1 3.9543 5.6326 1.4760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194644553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 21.114805 kcal Electronic energy + Delta-G solvation = -27982.034771 eV Core-core repulsion = 24102.441446 eV Total energy + Delta-G solvation = -3879.593325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61144 -39.78189 -38.39574 -37.63189 -35.11128 -34.34726 -32.45057 -31.55941 -30.18378 -29.67121 -28.62046 -26.69713 -26.00422 -23.96855 -23.69358 -22.97078 -21.75371 -21.41530 -20.30963 -19.10890 -17.63175 -17.09163 -16.79971 -16.62574 -16.31227 -16.07262 -15.93785 -15.26862 -14.75716 -14.67436 -14.61710 -14.40887 -14.06537 -13.94744 -13.76437 -13.69534 -13.45188 -12.90749 -12.59305 -12.43052 -12.07625 -11.99315 -11.74771 -11.56737 -11.28884 -11.03285 -10.85588 -10.71439 -10.60381 -10.31560 -10.15849 -10.06059 -9.92482 -9.84728 -9.37103 -8.89738 -8.64681 -8.58358 -7.54188 -6.11894 -4.10087 1.10649 2.00669 2.59936 2.92182 3.11825 3.22780 3.31259 3.31965 3.51921 4.22526 4.24953 4.35580 4.36705 4.47726 4.57106 4.73914 4.80038 4.94043 4.96061 5.03010 5.08918 5.17353 5.20358 5.27775 5.29714 5.31641 5.38668 5.50726 5.66825 5.72562 5.86989 5.91292 6.03728 6.16767 6.26545 6.38633 6.56039 6.58244 6.73343 6.74804 6.86774 7.32955 7.49194 7.59110 7.75535 7.89552 8.04780 8.56144 8.95617 9.49302 11.00956 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.003222 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.661645 B = 8689.344419 C = 9429.833051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.053 3.947 4 C 0.102 3.898 5 N -0.425 5.425 6 C 0.206 3.794 7 N -0.493 5.493 8 C 0.023 3.977 9 C -0.074 4.074 10 C 0.588 3.412 11 O -0.548 6.548 12 N -0.590 5.590 13 C 0.118 3.882 14 C 0.051 3.949 15 N -0.526 5.526 16 C 0.163 3.837 17 C -0.513 4.513 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.038 3.962 26 C 0.082 3.918 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.213 0.787 35 H 0.194 0.806 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.031 0.969 41 H -0.017 1.017 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -12.601 -20.011 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.025 4.025 4 C -0.021 4.021 5 N -0.108 5.108 6 C -0.076 4.076 7 N -0.211 5.211 8 C -0.129 4.129 9 C -0.191 4.191 10 C 0.376 3.624 11 O -0.428 6.428 12 N -0.322 5.322 13 C -0.004 4.004 14 C -0.078 4.078 15 N -0.250 5.250 16 C 0.037 3.963 17 C -0.551 4.551 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.091 4.091 26 C -0.041 4.041 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.229 0.771 35 H 0.211 0.789 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.001 0.999 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.102 0.898 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.046 -12.733 -19.905 24.390 hybrid contribution -2.162 0.065 -0.297 2.184 sum 3.884 -12.668 -20.202 24.160 Atomic orbital electron populations 1.22799 0.79899 1.03190 1.00448 1.87787 1.20583 1.26496 1.95551 1.22671 0.92706 0.85750 1.01392 1.21796 0.92523 0.80714 1.07041 1.45210 1.44090 1.13985 1.07469 1.25188 0.99337 0.91055 0.92043 1.70220 1.21373 1.14277 1.15229 1.23145 1.01325 0.97894 0.90550 1.20864 1.13871 0.93453 0.90891 1.16809 0.77410 0.84652 0.83552 1.90793 1.53542 1.23421 1.75024 1.47906 1.67380 1.05848 1.11103 1.21938 0.98286 1.01275 0.78865 1.22391 0.94135 0.88198 1.03091 1.61935 1.45003 1.08159 1.09927 1.20188 0.86350 0.92010 0.97766 1.21005 1.14335 1.30807 0.88936 0.90005 1.24895 0.97382 0.96167 0.94775 1.69889 1.34764 1.40993 1.07994 0.86869 0.82199 0.79860 0.80825 1.20417 1.21070 1.19206 1.22445 0.95584 1.00281 0.90803 1.22772 0.99635 0.81257 1.00394 0.89061 0.93556 0.93869 0.92358 0.92739 0.87568 0.86395 0.77100 0.78916 0.89062 0.90225 0.95784 0.87690 0.95107 0.99894 0.92577 0.89757 0.95561 0.89799 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.93 10.70 -35.23 -0.38 -4.31 16 3 C 0.05 0.51 6.26 37.16 0.23 0.74 16 4 C 0.10 0.93 6.13 -4.04 -0.02 0.91 16 5 N -0.43 -4.42 2.77 -114.59 -0.32 -4.74 16 6 C 0.21 1.87 12.51 -90.58 -1.13 0.74 16 7 N -0.49 -5.68 11.20 -14.43 -0.16 -5.84 16 8 C 0.02 0.27 9.61 -17.47 -0.17 0.10 16 9 C -0.07 -0.93 6.56 -82.14 -0.54 -1.47 16 10 C 0.59 8.62 7.59 -12.82 -0.10 8.52 16 11 O -0.55 -9.31 14.77 5.21 0.08 -9.23 16 12 N -0.59 -8.47 3.01 -173.98 -0.52 -8.99 16 13 C 0.12 1.83 6.60 -3.60 -0.02 1.81 16 14 C 0.05 0.92 5.46 -3.70 -0.02 0.90 16 15 N -0.53 -10.20 4.62 -235.77 -1.09 -11.29 16 16 C 0.16 3.76 3.79 -4.97 -0.02 3.74 16 17 C -0.51 -13.96 8.96 -34.44 -0.31 -14.27 16 18 H 0.08 2.41 7.37 -52.49 -0.39 2.03 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 21 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 26 C 0.08 1.03 5.52 -3.60 -0.02 1.01 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.67 8.12 -51.93 -0.42 0.24 16 33 H 0.12 1.34 6.74 -51.93 -0.35 0.99 16 34 H 0.21 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.19 1.85 5.69 -52.49 -0.30 1.55 16 36 H 0.09 1.41 7.06 -51.93 -0.37 1.05 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 2.12 6.67 -51.93 -0.35 1.77 16 40 H 0.03 0.72 7.03 -51.93 -0.36 0.35 16 41 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 44 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.11 1.13 3.50 -51.93 -0.18 0.95 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -33.42 367.71 -8.79 -42.21 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.92 Total: -0.08 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.13 Total: 6.54 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -1.32 Total: -56.91 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.30 Total: -13.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.42 -8.79 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194644553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.322 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds