Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99956 * 2 1 4 4 C 1.53007 * 109.46671 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46773 * 175.04193 * 4 3 2 6 6 C 1.34490 * 126.47535 * 262.06247 * 5 4 3 7 7 N 1.30859 * 109.16598 * 180.25628 * 6 5 4 8 8 C 1.33322 * 109.68647 * 359.76405 * 7 6 5 9 9 C 1.36667 * 107.78083 * 0.02562 * 8 7 6 10 10 C 1.46760 * 126.84257 * 179.97438 * 9 8 7 11 11 O 1.21680 * 120.00321 * 205.27160 * 10 9 8 12 12 N 1.34780 * 120.00167 * 25.27243 * 10 9 8 13 13 C 1.47076 * 120.88370 * 179.83147 * 12 10 9 14 14 C 1.53242 * 108.51967 * 231.16035 * 13 12 10 15 15 N 1.46894 * 109.34059 * 306.16754 * 14 13 12 16 16 C 1.46899 * 111.00348 * 187.25488 * 15 14 13 17 17 C 1.50704 * 109.46828 * 65.69553 * 16 15 14 18 18 H 1.07996 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99799 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00000 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99824 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46880 * 90.00746 * 21 19 17 23 23 H 1.48498 * 109.46804 * 210.00088 * 21 19 17 24 24 H 1.48497 * 109.47087 * 330.00420 * 21 19 17 25 25 C 1.46904 * 111.26799 * 63.10351 * 15 14 13 26 26 C 1.47076 * 120.88083 * 359.80087 * 12 10 9 27 27 H 1.08993 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46988 * 300.00389 * 1 2 3 29 29 H 1.09003 * 109.46690 * 60.00243 * 1 2 3 30 30 H 1.08992 * 109.47276 * 60.00320 * 3 2 1 31 31 H 1.08994 * 109.47243 * 299.99856 * 3 2 1 32 32 H 1.09000 * 109.47066 * 55.04460 * 4 3 2 33 33 H 1.08999 * 109.47137 * 295.03806 * 4 3 2 34 34 H 1.08003 * 125.41894 * 0.05850 * 6 5 4 35 35 H 1.07996 * 126.10727 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.62948 * 350.86666 * 13 12 10 37 37 H 1.08997 * 109.63627 * 111.44539 * 13 12 10 38 38 H 1.09000 * 109.49314 * 66.13139 * 14 13 12 39 39 H 1.09000 * 109.48939 * 186.20724 * 14 13 12 40 40 H 1.08992 * 109.47603 * 185.69864 * 16 15 14 41 41 H 1.09004 * 109.46887 * 305.70093 * 16 15 14 42 42 H 0.97004 * 119.99307 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49060 * 176.93795 * 25 15 14 44 44 H 1.08991 * 109.48940 * 56.85832 * 25 15 14 45 45 H 1.08998 * 109.63146 * 248.55120 * 26 12 10 46 46 H 1.09003 * 109.62633 * 9.13138 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1311 2.5177 -0.1187 6 6 4.5856 3.0922 -1.2466 7 7 5.0518 4.2820 -0.9649 8 6 4.9134 4.5214 0.3394 9 6 4.3299 3.4230 0.9057 10 6 3.9874 3.2397 2.3209 11 8 3.9102 2.1188 2.7880 12 7 3.7583 4.3130 3.1034 13 6 3.4102 4.1516 4.5232 14 6 2.1458 4.9685 4.8101 15 7 2.3540 6.3561 4.3755 16 6 1.2327 7.2109 4.7879 17 6 1.1958 7.3001 6.2918 18 1 1.9319 6.7748 6.8822 19 6 0.2223 8.0525 6.9141 20 7 0.1904 8.1308 8.2265 21 14 -1.0506 8.9617 5.8929 22 1 -2.2253 8.0815 5.6679 23 1 -1.4807 10.1865 6.6141 24 1 -0.4576 9.3399 4.5850 25 6 2.5689 6.4334 2.9243 26 6 3.8506 5.6766 2.5602 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 0.8899 31 1 1.6887 1.8463 -0.8899 32 1 3.8515 0.5687 -0.8414 33 1 3.8630 0.7224 0.9319 34 1 4.5714 2.6418 -2.2281 35 1 5.2103 5.4221 0.8561 36 1 3.2226 3.0994 4.7369 37 1 4.2291 4.5140 5.1446 38 1 1.3042 4.5393 4.2663 39 1 1.9357 4.9499 5.8795 40 1 1.3624 8.2082 4.3678 41 1 0.2976 6.7831 4.4263 42 1 -0.4944 8.6604 8.6642 43 1 2.6657 7.4773 2.6261 44 1 1.7215 5.9839 2.4068 45 1 4.7119 6.1857 2.9928 46 1 3.9543 5.6326 1.4760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194644553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -2.702687 kcal Electronic energy + Delta-G solvation = -27983.067575 eV Core-core repulsion = 24102.441446 eV Total energy + Delta-G solvation = -3880.626129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.43607 -40.96839 -39.14906 -38.95169 -36.30776 -35.39282 -34.44086 -32.75525 -31.22747 -30.62408 -30.08551 -27.58978 -27.29618 -25.05280 -24.72675 -24.11659 -23.03741 -22.58069 -21.55668 -20.18970 -19.02441 -18.42714 -18.04612 -17.37667 -17.26317 -16.93806 -16.89698 -16.53863 -16.22931 -16.04870 -15.73578 -15.48897 -15.23411 -15.11977 -14.96583 -14.75993 -14.43802 -14.33543 -14.19467 -13.49536 -13.26682 -13.03608 -12.89758 -12.77801 -12.52787 -12.42887 -12.36762 -12.25841 -11.87817 -11.77992 -11.52637 -11.38327 -10.97175 -10.89214 -10.82175 -10.78581 -9.95381 -9.63454 -9.10716 -8.28173 -6.31716 0.21718 1.18808 1.34547 1.36213 1.46656 1.75290 1.90690 2.12594 2.34021 2.79163 3.03163 3.13028 3.31134 3.57603 3.67405 3.76318 3.89666 3.99016 4.02795 4.07724 4.17350 4.19168 4.22184 4.35264 4.37288 4.37992 4.44819 4.52582 4.57792 4.68216 4.74869 4.78398 4.80870 4.90705 4.97411 5.04620 5.08129 5.30795 5.37861 5.51934 5.89649 5.90908 6.02738 6.21023 6.28020 6.59973 6.74896 6.77105 6.95282 7.31918 8.88123 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.003222 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.661645 B = 8689.344419 C = 9429.833051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.059 3.941 4 C 0.105 3.895 5 N -0.428 5.428 6 C 0.228 3.772 7 N -0.519 5.519 8 C 0.033 3.967 9 C -0.104 4.104 10 C 0.588 3.412 11 O -0.580 6.580 12 N -0.594 5.594 13 C 0.130 3.870 14 C 0.059 3.941 15 N -0.537 5.537 16 C 0.172 3.828 17 C -0.516 4.516 18 H 0.042 0.958 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.945 3.055 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.245 1.245 25 C 0.036 3.964 26 C 0.090 3.910 27 H 0.107 0.893 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.257 0.743 35 H 0.209 0.791 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.039 0.961 41 H -0.018 1.018 42 H 0.266 0.734 43 H 0.101 0.899 44 H 0.024 0.976 45 H 0.097 0.903 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -12.343 -24.057 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.019 4.019 4 C -0.017 4.017 5 N -0.110 5.110 6 C -0.053 4.053 7 N -0.237 5.237 8 C -0.120 4.120 9 C -0.220 4.220 10 C 0.378 3.622 11 O -0.462 6.462 12 N -0.325 5.325 13 C 0.007 3.993 14 C -0.070 4.070 15 N -0.261 5.261 16 C 0.045 3.955 17 C -0.555 4.555 18 H 0.060 0.940 19 C -0.188 4.188 20 N -0.588 5.588 21 Si 0.769 3.231 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.169 1.169 25 C -0.092 4.092 26 C -0.032 4.032 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.273 0.727 35 H 0.225 0.775 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.036 0.964 39 H 0.093 0.907 40 H 0.057 0.943 41 H -0.001 1.001 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.042 0.958 45 H 0.115 0.885 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.296 -12.479 -23.976 27.753 hybrid contribution -2.176 -0.111 0.939 2.373 sum 4.120 -12.590 -23.037 26.574 Atomic orbital electron populations 1.22971 0.78806 1.04402 1.00712 1.87763 1.21868 1.26744 1.95585 1.22595 0.93100 0.85530 1.00671 1.21812 0.92057 0.80526 1.07258 1.45326 1.44182 1.14089 1.07374 1.26112 0.96203 0.90081 0.92933 1.70282 1.22752 1.15658 1.15007 1.23384 1.00031 0.97812 0.90753 1.20605 1.16296 0.94932 0.90171 1.17113 0.76573 0.84004 0.84512 1.90774 1.54971 1.24596 1.75813 1.47921 1.67392 1.06759 1.10424 1.21660 0.96943 1.00420 0.80243 1.22233 0.95410 0.88303 1.01102 1.61840 1.43303 1.08008 1.12985 1.19953 0.87628 0.93123 0.94789 1.21255 1.13172 1.29805 0.91235 0.94003 1.25822 0.99840 0.97296 0.95887 1.70048 1.36114 1.42474 1.10117 0.85752 0.79187 0.78352 0.79848 1.19826 1.20771 1.16856 1.22600 0.96900 1.01914 0.87799 1.22889 0.98528 0.79881 1.01883 0.87482 0.94590 0.92281 0.95489 0.90920 0.83967 0.89070 0.72700 0.77507 0.89395 0.89933 0.96432 0.90735 0.94343 1.00061 0.92465 0.88039 0.95756 0.88454 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.72 10.70 -148.98 -1.59 -9.32 16 3 C 0.06 1.07 6.26 71.98 0.45 1.52 16 4 C 0.11 1.75 6.13 86.38 0.53 2.28 16 5 N -0.43 -7.84 2.77 -516.46 -1.43 -9.28 16 6 C 0.23 3.26 12.51 180.33 2.26 5.51 16 7 N -0.52 -10.17 11.20 -199.56 -2.24 -12.41 16 8 C 0.03 0.67 9.61 84.10 0.81 1.47 16 9 C -0.10 -2.43 6.56 40.01 0.26 -2.16 16 10 C 0.59 17.04 7.59 86.47 0.66 17.69 16 11 O -0.58 -20.12 14.77 -4.28 -0.06 -20.19 16 12 N -0.59 -16.70 3.01 -822.56 -2.48 -19.18 16 13 C 0.13 4.14 6.60 86.35 0.57 4.71 16 14 C 0.06 2.21 5.46 86.39 0.47 2.68 16 15 N -0.54 -20.78 4.62 -899.83 -4.16 -24.93 16 16 C 0.17 7.88 3.79 85.56 0.32 8.21 16 17 C -0.52 -28.96 8.96 25.60 0.23 -28.73 16 18 H 0.04 2.61 7.37 -2.91 -0.02 2.59 16 19 C 0.01 0.52 5.47 84.66 0.46 0.98 16 20 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 21 Si 0.94 43.00 27.47 68.60 1.88 44.88 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.25 -10.19 6.54 99.48 0.65 -9.54 16 25 C 0.04 1.06 5.62 86.38 0.49 1.54 16 26 C 0.09 2.07 5.52 86.35 0.48 2.55 16 27 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.14 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.09 2.06 6.74 -2.39 -0.02 2.04 16 34 H 0.26 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.21 3.32 5.69 -2.91 -0.02 3.30 16 36 H 0.09 2.86 7.06 -2.38 -0.02 2.84 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 3.24 6.67 -2.39 -0.02 3.22 16 40 H 0.04 1.72 7.03 -2.39 -0.02 1.70 16 41 H -0.02 -0.84 7.55 -2.39 -0.02 -0.86 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.10 2.62 7.99 -2.39 -0.02 2.60 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.13 2.42 3.50 -2.39 -0.01 2.41 16 Total: -1.00 -75.27 367.71 0.39 -74.88 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.71 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 9.23 Total: 19.89 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -10.00 Total: -123.87 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.66 Total: -29.50 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.88 kcal Total: -75.27 0.39 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194644553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.180 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds