Wall clock time and date at job start Fri Apr 10 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99741 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47268 * 179.97438 * 4 3 2 6 6 C 1.35396 * 126.44410 * 265.02766 * 5 4 3 7 7 C 1.35561 * 107.16563 * 179.97438 * 6 5 4 8 8 N 1.33105 * 108.34616 * 359.97438 * 7 6 5 9 9 C 1.31609 * 109.09411 * 359.76370 * 8 7 6 10 10 C 1.47413 * 125.86430 * 180.22563 * 9 8 7 11 11 O 1.21596 * 120.00404 * 174.12554 * 10 9 8 12 12 N 1.34778 * 119.99748 * 354.12857 * 10 9 8 13 13 C 1.47081 * 120.88322 * 184.08721 * 12 10 9 14 14 C 1.53689 * 108.27994 * 128.75462 * 13 12 10 15 15 N 1.46894 * 109.26167 * 54.08085 * 14 13 12 16 16 C 1.46893 * 111.00233 * 172.60939 * 15 14 13 17 17 C 1.50697 * 109.47221 * 294.29893 * 16 15 14 18 18 H 1.08006 * 120.00115 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00495 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99506 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47148 * 89.99904 * 21 19 17 23 23 H 1.48505 * 109.46817 * 209.99667 * 21 19 17 24 24 H 1.48493 * 109.47407 * 329.99712 * 21 19 17 25 25 C 1.46904 * 111.26849 * 296.76297 * 15 14 13 26 26 C 1.47077 * 120.88221 * 4.36017 * 12 10 9 27 27 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46758 * 299.99868 * 1 2 3 29 29 H 1.08998 * 109.47235 * 59.99489 * 1 2 3 30 30 H 1.09006 * 109.46836 * 60.00506 * 3 2 1 31 31 H 1.08994 * 109.47317 * 300.00178 * 3 2 1 32 32 H 1.08998 * 109.46922 * 59.99849 * 4 3 2 33 33 H 1.09004 * 109.47223 * 300.00461 * 4 3 2 34 34 H 1.08005 * 126.41325 * 359.92572 * 6 5 4 35 35 H 1.07998 * 125.82550 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.62713 * 248.52646 * 13 12 10 37 37 H 1.09001 * 109.62748 * 9.09618 * 13 12 10 38 38 H 1.09002 * 109.64692 * 294.07731 * 14 13 12 39 39 H 1.09002 * 109.42304 * 173.95311 * 14 13 12 40 40 H 1.08998 * 109.47524 * 54.30300 * 16 15 14 41 41 H 1.09005 * 109.47453 * 174.30458 * 16 15 14 42 42 H 0.97004 * 120.00465 * 180.02562 * 20 19 17 43 43 H 1.09010 * 109.48862 * 303.13834 * 25 15 14 44 44 H 1.08998 * 109.51462 * 183.07335 * 25 15 14 45 45 H 1.09004 * 109.63156 * 350.89960 * 26 12 10 46 46 H 1.08997 * 109.63149 * 111.47881 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 4.5442 3.2192 -1.0867 7 6 5.0289 4.4043 -0.6414 8 7 4.9144 4.4321 0.6844 9 6 4.3689 3.3064 1.0932 10 6 4.0693 2.9497 2.4918 11 8 3.4658 1.9241 2.7419 12 7 4.4643 3.7605 3.4934 13 6 4.2551 3.3812 4.8989 14 6 5.5927 3.5266 5.6417 15 7 6.1158 4.8838 5.4367 16 6 7.3019 5.1223 6.2697 17 6 6.9075 5.0982 7.7240 18 1 5.8786 4.9228 8.0016 19 6 7.8602 5.2990 8.7001 20 7 7.5162 5.2775 9.9692 21 14 9.6399 5.6018 8.2199 22 1 9.8655 7.0596 8.0493 23 1 10.5351 5.0837 9.2856 24 1 9.9340 4.9027 6.9433 25 6 6.4092 5.1333 4.0190 26 6 5.1106 5.0509 3.2098 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8567 0.6440 -0.8908 33 1 3.8575 0.6436 0.8891 34 1 4.4970 2.8912 -2.1147 35 1 5.4373 5.1918 -1.2574 36 1 3.5099 4.0376 5.3483 37 1 3.9155 2.3468 4.9523 38 1 6.3071 2.7993 5.2559 39 1 5.4366 3.3539 6.7066 40 1 8.0411 4.3440 6.0808 41 1 7.7281 6.0953 6.0251 42 1 8.1864 5.4191 10.6560 43 1 7.1123 4.3836 3.6558 44 1 6.8455 6.1258 3.9066 45 1 5.3371 5.1211 2.1458 46 1 4.4462 5.8648 3.4999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199405118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:54 Heat of formation + Delta-G solvation = 20.063982 kcal Electronic energy + Delta-G solvation = -27769.132329 eV Core-core repulsion = 23889.493437 eV Total energy + Delta-G solvation = -3879.638892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66150 -39.65716 -38.37808 -37.54603 -35.16811 -34.18010 -32.34854 -31.22051 -30.07851 -29.72211 -28.56971 -26.71812 -25.80695 -24.09238 -23.55668 -22.79103 -21.73845 -21.35523 -20.21330 -18.99434 -17.62811 -16.92687 -16.68211 -16.60933 -16.40195 -16.04591 -15.67253 -15.28737 -14.68429 -14.51925 -14.50700 -14.37802 -13.98074 -13.87294 -13.78753 -13.46062 -13.43620 -12.83635 -12.58546 -12.44701 -12.29804 -11.88647 -11.74321 -11.56214 -11.24588 -10.96012 -10.72205 -10.53812 -10.44394 -10.30443 -10.15061 -10.12348 -9.93829 -9.43057 -9.21368 -8.92151 -8.56963 -8.44971 -7.38228 -6.05365 -4.02898 1.12275 2.01866 2.37099 2.99119 3.27041 3.28964 3.36403 3.38679 3.57337 4.07967 4.25859 4.42152 4.42568 4.51009 4.76516 4.78310 4.92614 4.93751 4.99345 5.07599 5.25983 5.27255 5.28732 5.30883 5.39789 5.47777 5.68559 5.72620 5.77047 5.85037 5.95797 6.13247 6.27128 6.41709 6.46044 6.49268 6.60640 6.65377 6.82218 6.88465 7.01557 7.36164 7.58148 7.58960 7.88449 8.02373 8.09355 8.64866 9.02407 9.56390 11.07569 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.002815 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.509183 B = 9946.073440 C =10858.124971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.055 3.945 4 C 0.104 3.896 5 N -0.413 5.413 6 C -0.031 4.031 7 C -0.027 4.027 8 N -0.439 5.439 9 C 0.159 3.841 10 C 0.596 3.404 11 O -0.548 6.548 12 N -0.577 5.577 13 C 0.116 3.884 14 C 0.052 3.948 15 N -0.529 5.529 16 C 0.162 3.838 17 C -0.510 4.510 18 H 0.081 0.919 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.042 3.958 26 C 0.065 3.935 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.103 0.897 40 H -0.012 1.012 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.024 0.976 44 H 0.080 0.920 45 H 0.155 0.845 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -6.505 -26.007 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.022 4.022 4 C -0.018 4.018 5 N -0.095 5.095 6 C -0.168 4.168 7 C -0.178 4.178 8 N -0.160 5.160 9 C -0.101 4.101 10 C 0.382 3.618 11 O -0.426 6.426 12 N -0.308 5.308 13 C -0.006 4.006 14 C -0.077 4.077 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.549 4.549 18 H 0.099 0.901 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.193 1.193 25 C -0.088 4.088 26 C -0.058 4.058 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.122 0.878 40 H 0.005 0.995 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.171 0.829 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.354 -6.418 -24.957 27.771 hybrid contribution 1.306 -0.591 -0.912 1.699 sum -9.048 -7.009 -25.869 28.288 Atomic orbital electron populations 1.22779 0.80057 1.03106 1.00287 1.87792 1.20449 1.26597 1.95538 1.22636 0.92421 0.85735 1.01429 1.21785 0.92912 0.80392 1.06692 1.44985 1.43284 1.14846 1.06388 1.22924 1.06101 0.94852 0.92968 1.22593 1.06033 0.97979 0.91227 1.69752 1.15985 1.18520 1.11778 1.22860 1.07434 0.89471 0.90298 1.16561 0.79884 0.83496 0.81904 1.90799 1.42466 1.25715 1.83626 1.47941 1.57103 1.19888 1.05867 1.22074 0.98643 1.01602 0.78246 1.22444 0.93715 0.89736 1.01801 1.61925 1.34068 1.24940 1.04385 1.20170 0.87059 0.95223 0.93942 1.21029 0.97274 1.48780 0.87767 0.90058 1.24895 0.98589 0.94957 0.94857 1.69887 1.34174 1.50320 0.99481 0.86869 0.85537 0.78934 0.78458 1.20107 1.21234 1.19321 1.22436 0.95668 1.00952 0.89724 1.23282 0.93777 0.83103 1.05623 0.89159 0.93576 0.94027 0.91633 0.93072 0.88020 0.86394 0.79908 0.80253 0.90271 0.89183 0.95727 0.87847 0.99452 0.95621 0.92653 0.95806 0.90139 0.82942 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.87 10.70 -35.23 -0.38 -4.24 16 3 C 0.06 0.52 6.19 37.16 0.23 0.75 16 4 C 0.10 0.97 5.78 -4.04 -0.02 0.95 16 5 N -0.41 -4.33 2.76 -114.59 -0.32 -4.64 16 6 C -0.03 -0.25 11.53 -16.94 -0.20 -0.44 16 7 C -0.03 -0.25 11.85 -17.96 -0.21 -0.46 16 8 N -0.44 -5.55 7.52 -11.26 -0.08 -5.64 16 9 C 0.16 2.13 7.58 -154.52 -1.17 0.96 16 10 C 0.60 9.34 7.69 -12.52 -0.10 9.24 16 11 O -0.55 -9.24 13.70 5.28 0.07 -9.17 16 12 N -0.58 -9.31 3.00 -173.46 -0.52 -9.84 16 13 C 0.12 1.94 6.61 -3.37 -0.02 1.92 16 14 C 0.05 1.01 5.47 -3.47 -0.02 0.99 16 15 N -0.53 -11.11 4.62 -235.47 -1.09 -12.20 16 16 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 17 C -0.51 -14.38 8.96 -34.44 -0.31 -14.69 16 18 H 0.08 2.47 7.37 -52.48 -0.39 2.09 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 21 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 25 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 26 C 0.06 1.00 6.46 -3.61 -0.02 0.97 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.76 7.53 -51.93 -0.39 0.36 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.12 1.35 6.81 -51.93 -0.35 0.99 16 34 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.45 7.09 -51.93 -0.37 1.09 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 2.19 6.67 -51.93 -0.35 1.85 16 40 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 41 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.08 1.34 7.99 -51.93 -0.41 0.92 16 45 H 0.15 2.21 3.77 -77.78 -0.29 1.92 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -33.56 367.99 -8.66 -42.22 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.13 Total: -0.27 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.87 Total: 8.07 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.24 Total: -59.01 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.30 Total: -13.41 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.56 -8.66 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199405118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.280 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds