Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99741 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47268 * 179.97438 * 4 3 2 6 6 C 1.35396 * 126.44410 * 265.02766 * 5 4 3 7 7 C 1.35561 * 107.16563 * 179.97438 * 6 5 4 8 8 N 1.33105 * 108.34616 * 359.97438 * 7 6 5 9 9 C 1.31609 * 109.09411 * 359.76370 * 8 7 6 10 10 C 1.47413 * 125.86430 * 180.22563 * 9 8 7 11 11 O 1.21596 * 120.00404 * 174.12554 * 10 9 8 12 12 N 1.34778 * 119.99748 * 354.12857 * 10 9 8 13 13 C 1.47081 * 120.88322 * 184.08721 * 12 10 9 14 14 C 1.53689 * 108.27994 * 128.75462 * 13 12 10 15 15 N 1.46894 * 109.26167 * 54.08085 * 14 13 12 16 16 C 1.46893 * 111.00233 * 172.60939 * 15 14 13 17 17 C 1.50697 * 109.47221 * 294.29893 * 16 15 14 18 18 H 1.08006 * 120.00115 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00495 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99506 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47148 * 89.99904 * 21 19 17 23 23 H 1.48505 * 109.46817 * 209.99667 * 21 19 17 24 24 H 1.48493 * 109.47407 * 329.99712 * 21 19 17 25 25 C 1.46904 * 111.26849 * 296.76297 * 15 14 13 26 26 C 1.47077 * 120.88221 * 4.36017 * 12 10 9 27 27 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46758 * 299.99868 * 1 2 3 29 29 H 1.08998 * 109.47235 * 59.99489 * 1 2 3 30 30 H 1.09006 * 109.46836 * 60.00506 * 3 2 1 31 31 H 1.08994 * 109.47317 * 300.00178 * 3 2 1 32 32 H 1.08998 * 109.46922 * 59.99849 * 4 3 2 33 33 H 1.09004 * 109.47223 * 300.00461 * 4 3 2 34 34 H 1.08005 * 126.41325 * 359.92572 * 6 5 4 35 35 H 1.07998 * 125.82550 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.62713 * 248.52646 * 13 12 10 37 37 H 1.09001 * 109.62748 * 9.09618 * 13 12 10 38 38 H 1.09002 * 109.64692 * 294.07731 * 14 13 12 39 39 H 1.09002 * 109.42304 * 173.95311 * 14 13 12 40 40 H 1.08998 * 109.47524 * 54.30300 * 16 15 14 41 41 H 1.09005 * 109.47453 * 174.30458 * 16 15 14 42 42 H 0.97004 * 120.00465 * 180.02562 * 20 19 17 43 43 H 1.09010 * 109.48862 * 303.13834 * 25 15 14 44 44 H 1.08998 * 109.51462 * 183.07335 * 25 15 14 45 45 H 1.09004 * 109.63156 * 350.89960 * 26 12 10 46 46 H 1.08997 * 109.63149 * 111.47881 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 4.5442 3.2192 -1.0867 7 6 5.0289 4.4043 -0.6414 8 7 4.9144 4.4321 0.6844 9 6 4.3689 3.3064 1.0932 10 6 4.0693 2.9497 2.4918 11 8 3.4658 1.9241 2.7419 12 7 4.4643 3.7605 3.4934 13 6 4.2551 3.3812 4.8989 14 6 5.5927 3.5266 5.6417 15 7 6.1158 4.8838 5.4367 16 6 7.3019 5.1223 6.2697 17 6 6.9075 5.0982 7.7240 18 1 5.8786 4.9228 8.0016 19 6 7.8602 5.2990 8.7001 20 7 7.5162 5.2775 9.9692 21 14 9.6399 5.6018 8.2199 22 1 9.8655 7.0596 8.0493 23 1 10.5351 5.0837 9.2856 24 1 9.9340 4.9027 6.9433 25 6 6.4092 5.1333 4.0190 26 6 5.1106 5.0509 3.2098 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8567 0.6440 -0.8908 33 1 3.8575 0.6436 0.8891 34 1 4.4970 2.8912 -2.1147 35 1 5.4373 5.1918 -1.2574 36 1 3.5099 4.0376 5.3483 37 1 3.9155 2.3468 4.9523 38 1 6.3071 2.7993 5.2559 39 1 5.4366 3.3539 6.7066 40 1 8.0411 4.3440 6.0808 41 1 7.7281 6.0953 6.0251 42 1 8.1864 5.4191 10.6560 43 1 7.1123 4.3836 3.6558 44 1 6.8455 6.1258 3.9066 45 1 5.3371 5.1211 2.1458 46 1 4.4462 5.8648 3.4999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199405118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = -3.778897 kcal Electronic energy + Delta-G solvation = -27770.166234 eV Core-core repulsion = 23889.493437 eV Total energy + Delta-G solvation = -3880.672797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46983 -40.92624 -39.13539 -38.92407 -36.34015 -35.37802 -34.39878 -32.47500 -31.14015 -30.69288 -30.08118 -27.54351 -27.21278 -25.23705 -24.61485 -23.98643 -23.08526 -22.53981 -21.51726 -20.16265 -19.01988 -18.44659 -17.89601 -17.53185 -17.12627 -16.98995 -16.61056 -16.52737 -16.25825 -16.03677 -15.72190 -15.35481 -15.23882 -15.15261 -14.90819 -14.53728 -14.46818 -14.37832 -14.14325 -13.63167 -13.27612 -13.23221 -12.87255 -12.71736 -12.51880 -12.38780 -12.35329 -12.25155 -12.03865 -11.87980 -11.47756 -11.42746 -10.99804 -10.80734 -10.78555 -10.42083 -9.94526 -9.52084 -9.07347 -8.28243 -6.31766 0.21630 1.19821 1.35022 1.36297 1.46822 1.56786 1.95185 2.26482 2.34363 2.84802 3.03329 3.07312 3.21558 3.58243 3.69232 3.82080 3.96973 4.05032 4.10832 4.21086 4.27553 4.31691 4.39715 4.41621 4.43446 4.46114 4.52171 4.60600 4.61673 4.78483 4.78791 4.83675 4.90025 4.93778 4.98776 5.10461 5.23520 5.38037 5.51402 5.75589 5.88741 5.92261 6.01216 6.21305 6.29591 6.61223 6.66535 6.74096 6.97785 7.31793 8.88061 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.002815 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.509183 B = 9946.073440 C =10858.124971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.062 3.938 4 C 0.105 3.895 5 N -0.410 5.410 6 C -0.001 4.001 7 C -0.039 4.039 8 N -0.453 5.453 9 C 0.114 3.886 10 C 0.595 3.405 11 O -0.569 6.569 12 N -0.587 5.587 13 C 0.128 3.872 14 C 0.059 3.941 15 N -0.541 5.541 16 C 0.172 3.828 17 C -0.516 4.516 18 H 0.041 0.959 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.947 3.053 22 H -0.262 1.262 23 H -0.283 1.283 24 H -0.255 1.255 25 C 0.043 3.957 26 C 0.075 3.925 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.232 0.768 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.019 0.981 39 H 0.076 0.924 40 H -0.017 1.017 41 H 0.034 0.966 42 H 0.267 0.733 43 H 0.021 0.979 44 H 0.094 0.906 45 H 0.172 0.828 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -6.192 -30.360 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.016 4.016 4 C -0.016 4.016 5 N -0.092 5.092 6 C -0.138 4.138 7 C -0.190 4.190 8 N -0.176 5.176 9 C -0.143 4.143 10 C 0.382 3.618 11 O -0.449 6.449 12 N -0.317 5.317 13 C 0.005 3.995 14 C -0.070 4.070 15 N -0.266 5.266 16 C 0.045 3.955 17 C -0.555 4.555 18 H 0.059 0.941 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.770 3.230 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.179 1.179 25 C -0.086 4.086 26 C -0.047 4.047 27 H 0.122 0.878 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.249 0.751 35 H 0.228 0.772 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.001 0.999 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.112 0.888 45 H 0.187 0.813 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.484 -6.112 -29.321 31.417 hybrid contribution 0.904 -0.731 0.319 1.206 sum -8.579 -6.843 -29.002 31.009 Atomic orbital electron populations 1.22964 0.78756 1.04285 1.00811 1.87763 1.21971 1.26950 1.95617 1.22554 0.92504 0.85520 1.01000 1.21832 0.92806 0.79973 1.07030 1.45110 1.42728 1.14961 1.06353 1.23768 1.02508 0.93538 0.94006 1.23225 1.06211 0.99531 0.90067 1.69486 1.15826 1.18328 1.13931 1.22246 1.11163 0.91090 0.89765 1.16874 0.79062 0.82843 0.82998 1.90776 1.43294 1.26503 1.84323 1.47947 1.57862 1.20420 1.05508 1.21808 0.96775 1.01842 0.79041 1.22310 0.95039 0.89086 1.00572 1.61855 1.32755 1.25653 1.06286 1.19942 0.88088 0.95338 0.92114 1.21241 0.95662 1.48286 0.90285 0.94052 1.25824 1.03756 0.94668 0.94606 1.70040 1.36016 1.51805 1.00851 0.85723 0.79129 0.79535 0.78590 1.18674 1.20821 1.17889 1.22542 0.97006 1.01511 0.87501 1.23312 0.92498 0.82758 1.06162 0.87757 0.94345 0.92187 0.94644 0.90796 0.84499 0.89184 0.75123 0.77194 0.90312 0.88894 0.96256 0.90579 0.99906 0.94751 0.92409 0.96060 0.88772 0.81281 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.64 10.70 -148.98 -1.59 -9.23 16 3 C 0.06 1.08 6.19 71.98 0.45 1.53 16 4 C 0.11 1.76 5.78 86.38 0.50 2.26 16 5 N -0.41 -7.53 2.76 -516.45 -1.42 -8.96 16 6 C 0.00 -0.01 11.53 83.52 0.96 0.96 16 7 C -0.04 -0.56 11.85 83.88 0.99 0.43 16 8 N -0.45 -10.47 7.52 -189.53 -1.43 -11.90 16 9 C 0.11 2.92 7.58 136.28 1.03 3.96 16 10 C 0.59 18.85 7.69 86.66 0.67 19.52 16 11 O -0.57 -19.87 13.70 -4.02 -0.06 -19.92 16 12 N -0.59 -19.19 3.00 -820.96 -2.47 -21.65 16 13 C 0.13 4.47 6.61 86.50 0.57 5.04 16 14 C 0.06 2.41 5.47 86.54 0.47 2.88 16 15 N -0.54 -23.11 4.62 -898.91 -4.15 -27.26 16 16 C 0.17 8.42 3.79 85.56 0.32 8.74 16 17 C -0.52 -30.12 8.96 25.60 0.23 -29.89 16 18 H 0.04 2.67 7.37 -2.91 -0.02 2.65 16 19 C 0.01 0.52 5.47 84.66 0.46 0.99 16 20 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 21 Si 0.95 44.45 27.47 68.60 1.88 46.34 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 24 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 25 C 0.04 1.48 5.62 86.38 0.49 1.97 16 26 C 0.07 2.27 6.46 86.35 0.56 2.82 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.83 7.53 -2.38 -0.02 0.81 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 1.29 8.13 -2.39 -0.02 1.28 16 33 H 0.09 2.05 6.81 -2.39 -0.02 2.04 16 34 H 0.23 0.23 8.06 -2.91 -0.02 0.20 16 35 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.09 3.17 7.09 -2.39 -0.02 3.15 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 3.48 6.67 -2.39 -0.02 3.47 16 40 H -0.02 -0.83 7.18 -2.39 -0.02 -0.85 16 41 H 0.03 1.63 7.40 -2.38 -0.02 1.61 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.09 2.98 7.99 -2.39 -0.02 2.96 16 45 H 0.17 4.69 3.77 -53.42 -0.20 4.49 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -76.24 367.99 0.75 -75.49 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.73 Total: 13.53 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 8.95 Total: 22.80 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -9.17 Total: -129.01 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.65 Total: -29.16 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Total: -76.24 0.75 -75.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199405118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.711 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds