Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36884 * 126.39559 * 2 1 4 4 C 1.34666 * 106.81670 * 180.02562 * 3 2 1 5 5 N 1.34136 * 108.01968 * 359.78029 * 4 3 2 6 6 C 1.30499 * 109.25725 * 0.37020 * 5 4 3 7 7 C 1.50695 * 125.65104 * 179.88909 * 6 5 4 8 8 O 1.42899 * 109.47583 * 269.69177 * 7 6 5 9 9 C 1.42899 * 114.00292 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47008 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00166 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99585 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.62730 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46248 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 N 1.46498 * 109.46002 * 178.62636 * 15 14 13 17 17 C 1.36937 * 119.99990 * 204.99521 * 16 15 14 18 18 H 1.08000 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46973 * 120.00559 * 21 19 17 24 24 H 1.48497 * 109.47147 * 240.00213 * 21 19 17 25 25 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 26 26 C 1.46957 * 120.65462 * 359.81587 * 12 10 9 27 27 H 1.09001 * 109.46826 * 269.97500 * 1 2 3 28 28 H 1.08996 * 109.46944 * 29.96907 * 1 2 3 29 29 H 1.08998 * 109.47004 * 149.96830 * 1 2 3 30 30 H 1.07995 * 126.59221 * 0.05903 * 3 2 1 31 31 H 1.08003 * 125.99242 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46772 * 149.69237 * 7 6 5 33 33 H 1.08997 * 109.46976 * 29.69848 * 7 6 5 34 34 H 1.09002 * 109.47023 * 59.99908 * 9 8 7 35 35 H 1.08999 * 109.46694 * 300.00322 * 9 8 7 36 36 H 1.09002 * 109.58861 * 6.60251 * 13 12 10 37 37 H 1.08996 * 109.58519 * 246.32142 * 13 12 10 38 38 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 39 39 H 1.09001 * 109.49969 * 294.57596 * 14 13 12 40 40 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 41 41 H 0.97003 * 120.00330 * 24.99965 * 16 15 14 42 42 H 0.97009 * 119.99843 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.49643 * 181.31582 * 25 15 14 44 44 H 1.08996 * 109.49892 * 301.41776 * 25 15 14 45 45 H 1.09001 * 109.46843 * 113.75468 * 26 12 10 46 46 H 1.08997 * 109.71602 * 353.46961 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5096 -0.6903 0.0040 6 6 2.2664 -1.0870 -0.0006 7 6 1.8019 -2.5206 -0.0002 8 8 1.6539 -2.9739 -1.3473 9 6 1.2141 -4.3289 -1.4596 10 6 1.0937 -4.6988 -2.9156 11 8 1.3579 -3.8824 -3.7725 12 7 0.6924 -5.9370 -3.2652 13 6 0.5707 -6.3127 -4.6804 14 6 1.3826 -7.5882 -4.9265 15 6 0.9297 -8.6735 -3.9471 16 7 1.6814 -9.9050 -4.2014 17 6 1.1491 -11.1168 -3.8504 18 1 0.1750 -11.1648 -3.3864 19 6 1.8611 -12.2837 -4.0918 20 7 3.0480 -12.2253 -4.6578 21 14 1.1347 -13.9369 -3.6136 22 1 -0.2015 -13.7315 -2.9993 23 1 0.9972 -14.7860 -4.8242 24 1 2.0307 -14.6077 -2.6378 25 6 1.1861 -8.2072 -2.5122 26 6 0.3724 -6.9388 -2.2387 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8897 -0.5143 30 1 1.9613 2.1345 0.0009 31 1 4.4369 1.2612 -0.0003 32 1 0.8437 -2.5919 0.5146 33 1 2.5370 -3.1405 0.5131 34 1 0.2436 -4.4373 -0.9753 35 1 1.9367 -4.9865 -0.9765 36 1 0.9557 -5.5079 -5.3066 37 1 -0.4767 -6.4940 -4.9215 38 1 1.2214 -7.9304 -5.9488 39 1 2.4419 -7.3801 -4.7754 40 1 -0.1350 -8.8634 -4.0825 41 1 2.5561 -9.8620 -4.6184 42 1 3.5457 -13.0407 -4.8262 43 1 0.8849 -8.9899 -1.8160 44 1 2.2470 -7.9933 -2.3832 45 1 -0.6916 -7.1721 -2.2779 46 1 0.6248 -6.5485 -1.2528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201189407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = 4.887538 kcal Electronic energy + Delta-G solvation = -26732.784392 eV Core-core repulsion = 22852.487400 eV Total energy + Delta-G solvation = -3880.296992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37156 -40.16033 -38.14670 -37.08394 -34.52458 -34.34618 -32.22069 -31.42725 -30.86859 -29.44504 -28.15051 -27.39776 -26.00198 -24.70101 -23.04669 -22.51235 -21.70808 -20.50300 -20.28491 -18.96126 -17.80706 -17.28470 -17.08875 -16.72566 -16.53270 -15.95298 -15.46438 -15.09307 -14.86317 -14.67832 -14.26059 -13.87599 -13.79081 -13.64441 -13.50862 -13.29596 -13.26093 -13.16613 -13.00160 -12.56275 -12.25496 -12.00611 -11.95742 -11.61214 -11.01281 -10.91967 -10.85463 -10.52132 -10.25970 -10.23553 -10.11645 -9.92340 -9.86279 -9.73156 -9.66900 -8.95298 -8.76663 -8.55314 -7.01600 -5.80924 -3.10505 1.55866 2.37631 2.57503 2.62011 2.97439 3.39667 3.44855 3.47677 3.66872 4.19611 4.28331 4.38881 4.53590 4.55241 4.66818 4.70230 4.81752 4.88941 4.95670 5.00263 5.04841 5.15223 5.28043 5.30600 5.35396 5.44007 5.49652 5.55943 5.68557 5.90070 5.91870 5.95968 6.18462 6.30906 6.34372 6.44938 6.46883 6.51879 6.67049 6.80489 6.85303 6.99618 7.43172 7.65089 7.80415 8.19334 8.37125 9.48430 10.05944 10.40405 11.41556 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028216 B = 0.002042 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.091622 B =13707.421052 C =13888.664697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.451 5.451 3 C -0.052 4.052 4 C -0.028 4.028 5 N -0.470 5.470 6 C 0.204 3.796 7 C 0.148 3.852 8 O -0.357 6.357 9 C 0.045 3.955 10 C 0.516 3.484 11 O -0.527 6.527 12 N -0.605 5.605 13 C 0.118 3.882 14 C -0.140 4.140 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.152 4.152 26 C 0.106 3.894 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 24.440 12.005 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.134 5.134 3 C -0.185 4.185 4 C -0.176 4.176 5 N -0.190 5.190 6 C -0.057 4.057 7 C 0.070 3.930 8 O -0.275 6.275 9 C -0.034 4.034 10 C 0.303 3.697 11 O -0.403 6.403 12 N -0.340 5.340 13 C -0.004 4.004 14 C -0.179 4.179 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.194 4.194 26 C -0.017 4.017 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.194 0.806 31 H 0.190 0.810 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.876 24.298 11.423 27.980 hybrid contribution -0.786 -0.582 0.443 1.074 sum -8.662 23.716 11.866 27.897 Atomic orbital electron populations 1.22111 0.76442 1.05299 1.03547 1.45281 1.07759 1.06580 1.53779 1.22768 0.91388 0.92530 1.11829 1.22362 0.96586 0.90987 1.07707 1.70233 1.18353 1.12249 1.18136 1.22609 0.85908 0.89872 1.07347 1.20508 1.00311 0.87299 0.84925 1.88089 1.88292 1.26519 1.24556 1.22302 1.00755 0.84757 0.95611 1.20058 0.77406 0.82035 0.90243 1.90716 1.48754 1.49148 1.51661 1.48113 1.66706 1.11102 1.08121 1.21618 1.00269 0.97784 0.80744 1.22217 1.00205 0.94415 1.01023 1.20160 0.95815 0.86457 0.90712 1.42450 1.20654 1.00365 1.72986 1.19265 1.00785 0.84063 1.33041 0.91100 1.24767 0.96781 0.97845 1.01588 1.69677 1.12722 1.27133 1.48373 0.86134 0.78044 0.84432 0.77648 1.20565 1.21878 1.21883 1.22685 0.99813 0.94995 1.01866 1.21896 1.00185 0.89584 0.90071 0.90338 0.89315 0.89104 0.80600 0.81010 0.91536 0.89498 0.90152 0.89576 0.89325 0.91452 0.90438 0.91739 0.93366 0.78218 0.93506 0.90482 0.92051 0.91197 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.79 59.85 0.65 0.98 16 2 N -0.45 -4.08 3.15 -121.28 -0.38 -4.46 16 3 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 4 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 5 N -0.47 -6.42 11.25 -10.81 -0.12 -6.54 16 6 C 0.20 2.38 7.53 -155.42 -1.17 1.21 16 7 C 0.15 1.40 6.02 36.00 0.22 1.62 16 8 O -0.36 -4.58 9.86 -55.14 -0.54 -5.12 16 9 C 0.05 0.48 4.77 36.01 0.17 0.65 16 10 C 0.52 7.48 7.78 -10.98 -0.09 7.39 16 11 O -0.53 -9.89 15.91 -14.35 -0.23 -10.12 16 12 N -0.61 -8.13 2.98 -172.77 -0.51 -8.64 16 13 C 0.12 1.67 6.43 -3.71 -0.02 1.64 16 14 C -0.14 -2.27 5.55 -26.61 -0.15 -2.41 16 15 C 0.18 3.29 2.73 -67.89 -0.19 3.11 16 16 N -0.72 -17.42 5.12 -53.39 -0.27 -17.70 16 17 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C -0.15 -2.39 5.66 -26.63 -0.15 -2.54 16 26 C 0.11 1.23 6.33 -3.71 -0.02 1.20 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 36 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.65 5.95 -51.93 -0.31 0.34 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -37.02 380.04 -9.26 -46.27 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.22 Total: 6.07 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.40 Total: 4.68 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.57 Total: -64.34 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.77 Total: -15.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.02 -9.26 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201189407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.162 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds