Wall clock time and date at job start Fri Apr 10 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.47168 * 2 1 4 4 C 1.35030 * 124.88232 * 125.00018 * 3 2 1 5 5 C 1.35368 * 107.22542 * 180.02562 * 4 3 2 6 6 C 1.41494 * 105.50242 * 359.97438 * 5 4 3 7 7 C 1.47721 * 126.51551 * 179.97438 * 6 5 4 8 8 O 1.21574 * 119.99693 * 6.52195 * 7 6 5 9 9 N 1.34773 * 119.99577 * 186.52369 * 7 6 5 10 10 C 1.47515 * 118.74988 * 176.77976 * 9 7 6 11 11 C 1.53571 * 111.02692 * 138.39140 * 10 9 7 12 12 C 1.51535 * 109.58196 * 320.01734 * 11 10 9 13 13 O 1.42157 * 108.75015 * 91.40048 * 12 11 10 14 14 C 1.38020 * 119.44295 * 272.76933 * 13 12 11 15 15 H 1.08998 * 109.46440 * 303.43009 * 14 13 12 16 16 C 1.52999 * 109.46680 * 183.43544 * 14 13 12 17 17 N 1.46495 * 109.47535 * 64.99367 * 16 14 13 18 18 C 1.36940 * 120.00195 * 179.72613 * 17 16 14 19 19 H 1.07999 * 119.99684 * 0.26629 * 18 17 16 20 20 C 1.38814 * 119.99761 * 180.27366 * 18 17 16 21 21 N 1.31617 * 120.00456 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47260 * 59.99781 * 22 20 18 24 24 H 1.48496 * 109.46897 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46933 * 300.00157 * 22 20 18 26 26 C 1.45116 * 118.76157 * 356.79997 * 9 7 6 27 27 N 1.28470 * 124.88294 * 305.32767 * 3 2 1 28 28 H 1.08996 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47331 * 300.00218 * 1 2 3 30 30 H 1.09007 * 109.47008 * 60.00099 * 1 2 3 31 31 H 1.09001 * 109.47003 * 240.00193 * 2 1 3 32 32 H 1.08997 * 109.46910 * 119.99913 * 2 1 3 33 33 H 1.07994 * 126.39041 * 0.05270 * 4 3 2 34 34 H 1.08004 * 127.24785 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.16466 * 258.78130 * 10 9 7 36 36 H 1.08992 * 109.16985 * 17.99290 * 10 9 7 37 37 H 1.08999 * 109.45588 * 80.05422 * 11 10 9 38 38 H 1.09004 * 109.45485 * 199.98585 * 11 10 9 39 39 H 1.08995 * 109.59568 * 211.18444 * 12 11 10 40 40 H 1.08996 * 109.58881 * 331.62653 * 12 11 10 41 41 H 1.08999 * 109.47172 * 304.98741 * 16 14 13 42 42 H 1.09001 * 109.46768 * 184.99541 * 16 14 13 43 43 H 0.97007 * 120.00023 * 359.97438 * 17 16 14 44 44 H 0.96994 * 120.00260 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.46177 * 149.24526 * 26 9 7 46 46 H 1.08999 * 109.46318 * 29.28244 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0823 3.1923 0.5714 6 6 2.3001 3.4125 -0.5870 7 6 2.1847 4.6766 -1.3426 8 8 2.8886 5.6244 -1.0526 9 7 1.2991 4.7790 -2.3533 10 6 1.1556 6.0754 -3.0423 11 6 1.0329 5.8818 -4.5608 12 6 1.9847 4.7926 -5.0124 13 8 1.3000 3.5470 -4.9845 14 6 1.2743 2.8131 -3.8160 15 1 2.2949 2.6184 -3.4868 16 6 0.5562 1.4850 -4.0637 17 7 1.3317 0.6796 -5.0104 18 6 0.8847 -0.5605 -5.3812 19 1 -0.0418 -0.9430 -4.9792 20 6 1.6225 -1.3259 -6.2739 21 7 2.7519 -0.8600 -6.7634 22 14 1.0130 -3.0178 -6.7792 23 1 -0.3165 -2.8916 -7.4285 24 1 1.9748 -3.6257 -7.7335 25 1 0.8966 -3.8815 -5.5768 26 6 0.5225 3.6100 -2.7223 27 7 1.6887 2.2771 -0.8598 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3129 1.3749 1.7447 34 1 3.7122 3.9069 1.0803 35 1 0.2630 6.5802 -2.6727 36 1 2.0286 6.6923 -2.8296 37 1 0.0106 5.5964 -4.8090 38 1 1.2821 6.8144 -5.0670 39 1 2.3234 5.0008 -6.0273 40 1 2.8413 4.7538 -4.3397 41 1 -0.4336 1.6786 -4.4771 42 1 0.4574 0.9443 -3.1225 43 1 2.1638 1.0233 -5.3717 44 1 3.2676 -1.3949 -7.3868 45 1 -0.4482 3.9249 -3.1052 46 1 0.3792 2.9777 -1.8461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201558857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:32 Heat of formation + Delta-G solvation = 12.433629 kcal Electronic energy + Delta-G solvation = -29083.569470 eV Core-core repulsion = 25203.599701 eV Total energy + Delta-G solvation = -3879.969769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.67000 -41.43491 -39.66189 -36.71709 -36.31319 -35.49126 -34.49605 -32.82517 -31.65063 -30.89359 -30.16484 -27.88341 -26.93959 -25.58999 -24.42633 -23.34959 -22.55003 -22.30214 -21.69545 -20.36474 -19.21820 -18.47588 -18.04462 -17.80539 -17.37900 -17.04721 -16.75692 -16.48449 -15.89186 -15.83066 -15.27587 -15.11798 -14.96737 -14.78003 -14.46723 -14.42783 -14.19542 -13.86590 -13.51967 -13.37898 -13.30030 -13.18422 -12.92064 -12.75311 -12.69928 -12.39368 -12.22333 -12.16440 -11.93064 -11.79008 -11.58326 -11.47316 -11.10652 -10.92309 -10.58674 -10.20381 -10.04050 -9.62288 -8.96664 -7.89895 -5.19359 0.50976 1.23487 1.48366 1.52555 1.52883 1.58771 1.95494 2.28829 2.59156 2.73775 3.24979 3.43885 3.64299 3.75516 3.84687 3.99122 4.03824 4.07277 4.08528 4.13630 4.25749 4.31952 4.40107 4.40571 4.44823 4.55824 4.68253 4.72599 4.76903 4.78185 4.83341 4.90109 4.93394 4.94713 5.06310 5.11935 5.20725 5.31695 5.37614 5.51030 5.53136 5.96638 6.16783 6.29630 6.73963 6.83943 7.09818 7.35899 8.10968 8.36329 9.34141 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.004974 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.119533 B = 5627.925847 C = 7538.506200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.278 5.278 4 C 0.003 3.997 5 C -0.202 4.202 6 C -0.055 4.055 7 C 0.593 3.407 8 O -0.570 6.570 9 N -0.595 5.595 10 C 0.106 3.894 11 C -0.151 4.151 12 C 0.069 3.931 13 O -0.399 6.399 14 C 0.112 3.888 15 H 0.016 0.984 16 C 0.174 3.826 17 N -0.739 5.739 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.078 4.078 21 N -0.974 5.974 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.272 1.272 26 C 0.074 3.926 27 N -0.263 5.263 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.227 0.773 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.092 0.908 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 8.025 17.676 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.230 4.230 6 C -0.213 4.213 7 C 0.381 3.619 8 O -0.448 6.448 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.189 4.189 12 C -0.007 4.007 13 O -0.318 6.318 14 C 0.052 3.948 15 H 0.034 0.966 16 C 0.047 3.953 17 N -0.381 5.381 18 C -0.371 4.371 19 H 0.099 0.901 20 C -0.270 4.270 21 N -0.625 5.625 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.197 1.197 26 C -0.051 4.051 27 N -0.101 5.101 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.243 0.757 34 H 0.183 0.817 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.491 7.720 16.919 19.391 hybrid contribution 1.113 -0.241 -0.115 1.145 sum -4.378 7.480 16.804 18.908 Atomic orbital electron populations 1.22039 0.92714 1.04496 1.02747 1.22402 0.97176 0.75253 1.06420 1.46241 1.31418 1.10903 1.18055 1.23506 0.97610 0.94400 0.98513 1.21942 1.05175 0.97707 0.98201 1.21923 1.05094 0.93189 1.01055 1.17455 0.79239 0.85570 0.79612 1.90708 1.45377 1.39650 1.69085 1.47837 1.39358 1.12604 1.32831 1.22046 1.03721 0.83334 0.92370 1.22403 1.01493 1.00609 0.94396 1.22308 0.93845 0.82855 1.01742 1.86339 1.75300 1.34162 1.36027 1.21866 0.97015 0.90948 0.84938 0.96614 1.20659 0.93615 0.88099 0.92921 1.42448 1.26223 1.16920 1.52523 1.19623 1.04431 0.93002 1.20004 0.90131 1.25608 0.97693 1.02865 1.00856 1.69857 1.16933 1.39334 1.36405 0.85174 0.76949 0.79652 0.77754 1.20449 1.22565 1.19747 1.22930 0.94520 0.86771 1.00887 1.73543 1.22231 0.98171 1.16111 0.88400 0.91267 0.93110 0.89928 0.83668 0.75699 0.81717 0.89311 0.89686 0.89882 0.86598 0.88488 0.95124 0.95802 0.93403 0.79930 0.94210 0.88944 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.01 71.98 0.72 -1.86 16 2 C 0.11 1.73 7.12 86.38 0.61 2.35 16 3 N -0.28 -6.22 3.41 -347.94 -1.19 -7.41 16 4 C 0.00 0.05 11.40 83.54 0.95 1.00 16 5 C -0.20 -5.04 10.81 22.41 0.24 -4.80 16 6 C -0.06 -1.70 6.80 42.46 0.29 -1.41 16 7 C 0.59 19.86 7.64 86.75 0.66 20.52 16 8 O -0.57 -21.28 16.22 -3.95 -0.06 -21.35 16 9 N -0.60 -17.68 2.19 -821.52 -1.80 -19.48 16 10 C 0.11 2.57 6.17 86.38 0.53 3.10 16 11 C -0.15 -3.41 5.78 30.31 0.18 -3.23 16 12 C 0.07 2.11 6.38 71.50 0.46 2.57 16 13 O -0.40 -15.49 9.38 -117.93 -1.11 -16.59 16 14 C 0.11 4.23 2.29 31.21 0.07 4.31 16 15 H 0.02 0.70 8.07 -2.39 -0.02 0.68 16 16 C 0.17 7.34 5.92 86.38 0.51 7.85 16 17 N -0.74 -39.56 5.54 -343.46 -1.90 -41.46 16 18 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 22 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.07 2.21 4.46 87.25 0.39 2.60 16 27 N -0.26 -7.61 7.61 -48.17 -0.37 -7.98 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.08 8.08 -2.38 -0.02 1.07 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.15 1.07 8.04 -2.39 -0.02 1.05 16 33 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.19 6.96 -2.39 -0.02 2.17 16 37 H 0.08 1.88 8.01 -2.39 -0.02 1.87 16 38 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.10 2.75 8.14 -2.39 -0.02 2.74 16 40 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.37 21.90 7.65 -92.70 -0.71 21.19 16 44 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.09 2.51 8.11 -2.39 -0.02 2.49 16 46 H 0.13 3.84 4.66 -7.57 -0.04 3.81 16 Total: -1.00 -78.51 372.95 3.06 -75.45 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.25 Total: 35.69 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.93 Total: 16.24 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -4.97 Total: -137.58 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.17 Total: -37.94 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.51 3.06 -75.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201558857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.887 kcal (2) G-P(sol) polarization free energy of solvation -78.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds