Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47529 * 2 1 4 4 C 1.35034 * 124.87814 * 120.71666 * 3 2 1 5 5 C 1.35370 * 107.22621 * 180.02562 * 4 3 2 6 6 C 1.41504 * 105.50088 * 0.02562 * 5 4 3 7 7 C 1.47713 * 126.51968 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99668 * 4.83027 * 7 6 5 9 9 N 1.34774 * 120.00279 * 184.82881 * 7 6 5 10 10 C 1.47511 * 118.75782 * 183.90709 * 9 7 6 11 11 C 1.53575 * 111.02221 * 221.62606 * 10 9 7 12 12 C 1.51532 * 109.58201 * 39.98199 * 11 10 9 13 13 O 1.42164 * 108.75870 * 268.59303 * 12 11 10 14 14 C 1.38018 * 119.43135 * 87.22299 * 13 12 11 15 15 H 1.08997 * 109.46791 * 56.57863 * 14 13 12 16 16 C 1.52998 * 109.46462 * 176.57193 * 14 13 12 17 17 N 1.46500 * 109.47509 * 294.79533 * 16 14 13 18 18 C 1.36935 * 120.00370 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99655 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00232 * 179.72331 * 20 18 17 22 22 Si 1.86805 * 120.00158 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46753 * 269.72529 * 22 20 18 24 24 H 1.48503 * 109.47088 * 29.71953 * 22 20 18 25 25 H 1.48494 * 109.47189 * 149.72492 * 22 20 18 26 26 C 1.45121 * 118.75667 * 3.90348 * 9 7 6 27 27 N 1.28464 * 124.88944 * 301.06149 * 3 2 1 28 28 H 1.08999 * 109.47614 * 185.23609 * 1 2 3 29 29 H 1.09003 * 109.46541 * 305.24330 * 1 2 3 30 30 H 1.08998 * 109.46781 * 65.23695 * 1 2 3 31 31 H 1.09000 * 109.47072 * 240.00219 * 2 1 3 32 32 H 1.09002 * 109.46907 * 120.00757 * 2 1 3 33 33 H 1.07998 * 126.39165 * 0.04801 * 4 3 2 34 34 H 1.08001 * 127.25061 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.16884 * 101.22951 * 10 9 7 36 36 H 1.08998 * 109.12215 * 341.99383 * 10 9 7 37 37 H 1.08996 * 109.45527 * 279.93749 * 11 10 9 38 38 H 1.09008 * 109.42850 * 160.00167 * 11 10 9 39 39 H 1.08997 * 109.59117 * 148.82003 * 12 11 10 40 40 H 1.08991 * 109.59542 * 28.37603 * 12 11 10 41 41 H 1.09001 * 109.47231 * 174.79505 * 16 14 13 42 42 H 1.08999 * 109.47276 * 54.79735 * 16 14 13 43 43 H 0.97000 * 119.99412 * 0.02562 * 17 16 14 44 44 H 0.97001 * 120.00665 * 180.27188 * 21 20 18 45 45 H 1.09003 * 109.46125 * 330.69350 * 26 9 7 46 46 H 1.09003 * 109.46160 * 210.73345 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8094 1.9205 0.9524 5 6 3.0413 3.2068 0.5998 6 6 2.3418 3.3978 -0.6154 7 6 2.2807 4.6426 -1.4082 8 8 2.9405 5.6081 -1.0756 9 7 1.4935 4.7082 -2.5002 10 6 1.5193 5.9336 -3.3210 11 6 0.1031 6.3306 -3.7628 12 6 -0.8669 6.1064 -2.6204 13 8 -1.4019 4.7935 -2.7260 14 6 -0.7285 3.7380 -2.1453 15 1 -0.5895 3.9363 -1.0826 16 6 -1.5425 2.4546 -2.3223 17 7 -2.7980 2.5657 -1.5756 18 6 -3.6945 1.5306 -1.5854 19 1 -3.4757 0.6321 -2.1433 20 6 -4.8838 1.6357 -0.8774 21 7 -5.7478 0.6430 -0.8913 22 14 -5.2618 3.1895 0.0882 23 1 -4.7453 3.0494 1.4734 24 1 -4.6098 4.3511 -0.5681 25 1 -6.7308 3.4031 0.1269 26 6 0.6527 3.5707 -2.8240 27 7 1.7508 2.2552 -0.9026 28 1 -0.3634 -1.0233 0.0938 29 1 -0.3632 0.5930 0.8394 30 1 -0.3633 0.4305 -0.9332 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.1869 1.4192 1.8313 34 1 3.6351 3.9340 1.1335 35 1 2.1341 5.7599 -4.2041 36 1 1.9529 6.7455 -2.7371 37 1 -0.1948 5.7223 -4.6167 38 1 0.0933 7.3833 -4.0460 39 1 -1.6747 6.8358 -2.6783 40 1 -0.3434 6.2123 -1.6703 41 1 -0.9701 1.6065 -1.9465 42 1 -1.7607 2.3057 -3.3798 43 1 -2.9943 3.3726 -1.0742 44 1 -6.5807 0.7179 -0.3998 45 1 1.1251 2.6561 -2.4654 46 1 0.5216 3.5119 -3.9045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201558861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = 41.838022 kcal Electronic energy + Delta-G solvation = -29292.433928 eV Core-core repulsion = 25413.739229 eV Total energy + Delta-G solvation = -3878.694699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.77058 -40.28802 -38.43491 -35.37673 -34.90603 -34.63440 -33.08612 -31.24848 -30.74969 -29.95793 -28.97635 -26.79136 -25.49727 -24.48119 -22.68096 -22.09055 -21.47299 -21.05269 -20.76194 -19.33565 -17.66750 -17.49453 -16.95686 -16.50998 -16.42941 -15.97043 -15.59856 -14.86611 -14.68349 -14.50619 -14.31772 -13.76322 -13.71259 -13.54492 -13.40339 -13.21778 -12.75843 -12.66356 -12.40903 -12.39022 -12.25006 -12.05009 -11.84003 -11.43557 -11.18558 -11.13533 -10.82748 -10.76000 -10.46477 -10.29798 -10.10215 -9.88570 -9.56426 -9.40969 -9.32832 -9.11476 -8.85602 -8.46641 -7.16637 -5.73892 -3.07404 1.53736 2.07998 2.34472 2.96090 3.39745 3.40998 3.48777 3.49038 3.94007 4.17848 4.53062 4.64068 4.68720 4.77818 4.86408 4.87621 5.03985 5.07508 5.14787 5.20996 5.28812 5.42078 5.52973 5.56208 5.57255 5.63701 5.68640 5.69526 5.73120 5.81012 5.82401 5.92026 6.01462 6.06628 6.11800 6.22823 6.37997 6.53356 6.70414 6.77489 6.83869 7.29137 7.84109 7.95272 8.02049 8.16661 8.45406 9.25504 9.98780 10.20064 11.44501 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.005561 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.034740 B = 5034.041821 C = 6844.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 N -0.276 5.276 4 C -0.016 4.016 5 C -0.181 4.181 6 C -0.023 4.023 7 C 0.600 3.400 8 O -0.541 6.541 9 N -0.597 5.597 10 C 0.110 3.890 11 C -0.164 4.164 12 C 0.073 3.927 13 O -0.375 6.375 14 C 0.089 3.911 15 H 0.044 0.956 16 C 0.171 3.829 17 N -0.750 5.750 18 C -0.237 4.237 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.936 5.936 22 Si 0.879 3.121 23 H -0.287 1.287 24 H -0.274 1.274 25 H -0.292 1.292 26 C 0.050 3.950 27 N -0.246 5.246 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.137 0.863 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.633 3.553 -0.334 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.006 4.006 3 N -0.064 5.064 4 C -0.159 4.159 5 C -0.210 4.210 6 C -0.181 4.181 7 C 0.388 3.612 8 O -0.417 6.417 9 N -0.329 5.329 10 C -0.011 4.011 11 C -0.202 4.202 12 C -0.004 4.004 13 O -0.293 6.293 14 C 0.029 3.971 15 H 0.062 0.938 16 C 0.043 3.957 17 N -0.395 5.395 18 C -0.367 4.367 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.584 5.584 22 Si 0.710 3.290 23 H -0.214 1.214 24 H -0.200 1.200 25 H -0.218 1.218 26 C -0.075 4.075 27 N -0.083 5.083 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.197 0.803 34 H 0.177 0.823 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.196 0.804 44 H 0.068 0.932 45 H 0.154 0.846 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.997 3.173 -1.116 19.292 hybrid contribution 0.276 1.455 1.482 2.095 sum 19.273 4.628 0.366 19.824 Atomic orbital electron populations 1.22236 0.91398 1.03963 1.05457 1.22160 0.97715 0.76163 1.04513 1.45966 1.34049 1.11023 1.15352 1.22872 1.00290 0.95214 0.97571 1.21683 1.05547 0.96405 0.97323 1.21830 1.04110 0.93346 0.98843 1.17163 0.79225 0.85456 0.79405 1.90747 1.44862 1.36513 1.69564 1.47743 1.41754 1.17163 1.26224 1.21854 0.97378 0.87008 0.94901 1.22476 0.94650 1.02598 1.00514 1.22128 0.96603 0.84731 0.96956 1.86402 1.51513 1.14230 1.77130 1.22274 0.91036 0.88406 0.95344 0.93825 1.20665 0.87157 0.91601 0.96246 1.42607 1.18737 1.18429 1.59730 1.19017 0.96886 0.95230 1.25537 0.89243 1.24607 0.96743 0.97153 1.00530 1.69694 1.10378 1.31495 1.46862 0.86603 0.77331 0.84699 0.80385 1.21364 1.19992 1.21807 1.23315 0.92102 0.90658 1.01417 1.73385 1.20693 0.98918 1.15273 0.90017 0.91543 0.89566 0.88796 0.88104 0.80270 0.82332 0.91581 0.89074 0.90034 0.89728 0.89420 0.93400 0.93523 0.94912 0.80438 0.93179 0.84631 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.07 37.16 0.37 -1.66 16 2 C 0.11 0.97 7.10 -4.04 -0.03 0.94 16 3 N -0.28 -3.11 3.38 -61.33 -0.21 -3.32 16 4 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -2.24 10.81 -39.36 -0.43 -2.67 16 6 C -0.02 -0.33 6.84 -82.77 -0.57 -0.89 16 7 C 0.60 9.42 7.64 -12.39 -0.09 9.32 16 8 O -0.54 -9.49 16.22 5.30 0.09 -9.40 16 9 N -0.60 -8.43 2.19 -173.63 -0.38 -8.81 16 10 C 0.11 1.31 6.18 -3.19 -0.02 1.30 16 11 C -0.16 -1.84 5.78 -27.18 -0.16 -2.00 16 12 C 0.07 1.03 6.37 36.41 0.23 1.26 16 13 O -0.37 -6.65 9.39 -26.54 -0.25 -6.90 16 14 C 0.09 1.54 2.60 -25.78 -0.07 1.47 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.17 3.36 5.92 -4.04 -0.02 3.33 16 17 N -0.75 -18.18 5.34 -59.91 -0.32 -18.50 16 18 C -0.24 -6.64 10.47 -15.06 -0.16 -6.80 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 21 N -0.94 -29.26 13.97 55.49 0.78 -28.48 16 22 Si 0.88 22.68 27.74 -169.99 -4.72 17.96 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.87 6.51 56.52 0.37 -6.50 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 C 0.05 0.71 4.51 -3.83 -0.02 0.70 16 27 N -0.25 -3.37 7.99 33.42 0.27 -3.10 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.24 5.38 -51.93 -0.28 0.96 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.54 8.04 -51.93 -0.42 0.12 16 33 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.13 6.96 -51.93 -0.36 0.77 16 37 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 38 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 41 H 0.05 0.87 5.38 -51.93 -0.28 0.59 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.36 9.01 5.51 -40.82 -0.23 8.78 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.14 1.95 4.35 -80.13 -0.35 1.60 16 46 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -35.16 364.90 -7.44 -42.60 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.95 Total: 8.46 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.24 Total: 3.99 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.13 Total: -62.21 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.16 Total: -16.31 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.72 Total: 17.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.16 -7.44 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201558861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds