Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47529 * 2 1 4 4 C 1.35034 * 124.87814 * 120.71666 * 3 2 1 5 5 C 1.35370 * 107.22621 * 180.02562 * 4 3 2 6 6 C 1.41504 * 105.50088 * 0.02562 * 5 4 3 7 7 C 1.47713 * 126.51968 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99668 * 4.83027 * 7 6 5 9 9 N 1.34774 * 120.00279 * 184.82881 * 7 6 5 10 10 C 1.47511 * 118.75782 * 183.90709 * 9 7 6 11 11 C 1.53575 * 111.02221 * 221.62606 * 10 9 7 12 12 C 1.51532 * 109.58201 * 39.98199 * 11 10 9 13 13 O 1.42164 * 108.75870 * 268.59303 * 12 11 10 14 14 C 1.38018 * 119.43135 * 87.22299 * 13 12 11 15 15 H 1.08997 * 109.46791 * 56.57863 * 14 13 12 16 16 C 1.52998 * 109.46462 * 176.57193 * 14 13 12 17 17 N 1.46500 * 109.47509 * 294.79533 * 16 14 13 18 18 C 1.36935 * 120.00370 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99655 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00232 * 179.72331 * 20 18 17 22 22 Si 1.86805 * 120.00158 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46753 * 269.72529 * 22 20 18 24 24 H 1.48503 * 109.47088 * 29.71953 * 22 20 18 25 25 H 1.48494 * 109.47189 * 149.72492 * 22 20 18 26 26 C 1.45121 * 118.75667 * 3.90348 * 9 7 6 27 27 N 1.28464 * 124.88944 * 301.06149 * 3 2 1 28 28 H 1.08999 * 109.47614 * 185.23609 * 1 2 3 29 29 H 1.09003 * 109.46541 * 305.24330 * 1 2 3 30 30 H 1.08998 * 109.46781 * 65.23695 * 1 2 3 31 31 H 1.09000 * 109.47072 * 240.00219 * 2 1 3 32 32 H 1.09002 * 109.46907 * 120.00757 * 2 1 3 33 33 H 1.07998 * 126.39165 * 0.04801 * 4 3 2 34 34 H 1.08001 * 127.25061 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.16884 * 101.22951 * 10 9 7 36 36 H 1.08998 * 109.12215 * 341.99383 * 10 9 7 37 37 H 1.08996 * 109.45527 * 279.93749 * 11 10 9 38 38 H 1.09008 * 109.42850 * 160.00167 * 11 10 9 39 39 H 1.08997 * 109.59117 * 148.82003 * 12 11 10 40 40 H 1.08991 * 109.59542 * 28.37603 * 12 11 10 41 41 H 1.09001 * 109.47231 * 174.79505 * 16 14 13 42 42 H 1.08999 * 109.47276 * 54.79735 * 16 14 13 43 43 H 0.97000 * 119.99412 * 0.02562 * 17 16 14 44 44 H 0.97001 * 120.00665 * 180.27188 * 21 20 18 45 45 H 1.09003 * 109.46125 * 330.69350 * 26 9 7 46 46 H 1.09003 * 109.46160 * 210.73345 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8094 1.9205 0.9524 5 6 3.0413 3.2068 0.5998 6 6 2.3418 3.3978 -0.6154 7 6 2.2807 4.6426 -1.4082 8 8 2.9405 5.6081 -1.0756 9 7 1.4935 4.7082 -2.5002 10 6 1.5193 5.9336 -3.3210 11 6 0.1031 6.3306 -3.7628 12 6 -0.8669 6.1064 -2.6204 13 8 -1.4019 4.7935 -2.7260 14 6 -0.7285 3.7380 -2.1453 15 1 -0.5895 3.9363 -1.0826 16 6 -1.5425 2.4546 -2.3223 17 7 -2.7980 2.5657 -1.5756 18 6 -3.6945 1.5306 -1.5854 19 1 -3.4757 0.6321 -2.1433 20 6 -4.8838 1.6357 -0.8774 21 7 -5.7478 0.6430 -0.8913 22 14 -5.2618 3.1895 0.0882 23 1 -4.7453 3.0494 1.4734 24 1 -4.6098 4.3511 -0.5681 25 1 -6.7308 3.4031 0.1269 26 6 0.6527 3.5707 -2.8240 27 7 1.7508 2.2552 -0.9026 28 1 -0.3634 -1.0233 0.0938 29 1 -0.3632 0.5930 0.8394 30 1 -0.3633 0.4305 -0.9332 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.1869 1.4192 1.8313 34 1 3.6351 3.9340 1.1335 35 1 2.1341 5.7599 -4.2041 36 1 1.9529 6.7455 -2.7371 37 1 -0.1948 5.7223 -4.6167 38 1 0.0933 7.3833 -4.0460 39 1 -1.6747 6.8358 -2.6783 40 1 -0.3434 6.2123 -1.6703 41 1 -0.9701 1.6065 -1.9465 42 1 -1.7607 2.3057 -3.3798 43 1 -2.9943 3.3726 -1.0742 44 1 -6.5807 0.7179 -0.3998 45 1 1.1251 2.6561 -2.4654 46 1 0.5216 3.5119 -3.9045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201558861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = 17.757457 kcal Electronic energy + Delta-G solvation = -29293.478140 eV Core-core repulsion = 25413.739229 eV Total energy + Delta-G solvation = -3879.738910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.67955 -41.45860 -39.70719 -36.87348 -36.36278 -35.51360 -34.53059 -33.13586 -31.67793 -30.93138 -30.43787 -27.94760 -26.96913 -25.58099 -24.21469 -23.27729 -22.66238 -22.32241 -21.72005 -20.38598 -19.76197 -18.50903 -18.08477 -17.70693 -17.48560 -17.02508 -16.79478 -16.46018 -16.11664 -15.82421 -15.36206 -15.20338 -14.84180 -14.79694 -14.67287 -14.41488 -14.19783 -14.00541 -13.75050 -13.49013 -13.42858 -13.24687 -12.96450 -12.81449 -12.78330 -12.46558 -12.22330 -12.07150 -11.92510 -11.81441 -11.64786 -11.44344 -11.05789 -10.98660 -10.62407 -10.24365 -10.04236 -9.62503 -9.26728 -8.01240 -5.32157 0.48844 1.22937 1.34749 1.37287 1.44909 1.51525 1.93519 2.30175 2.47699 2.67411 3.22421 3.31330 3.50929 3.70664 3.81147 3.95664 3.99434 4.02294 4.08615 4.11436 4.22865 4.25591 4.29083 4.38701 4.42620 4.47346 4.65535 4.70538 4.74133 4.77918 4.79105 4.82570 4.92048 4.99427 5.05527 5.09259 5.17367 5.36104 5.50247 5.56006 5.76564 5.97380 6.15983 6.22664 6.67055 6.83434 7.07997 7.09440 7.84903 8.04371 9.19958 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.005561 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.034740 B = 5034.041821 C = 6844.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 N -0.277 5.277 4 C 0.004 3.996 5 C -0.203 4.203 6 C -0.052 4.052 7 C 0.594 3.406 8 O -0.569 6.569 9 N -0.595 5.595 10 C 0.106 3.894 11 C -0.152 4.152 12 C 0.067 3.933 13 O -0.399 6.399 14 C 0.105 3.895 15 H 0.022 0.978 16 C 0.169 3.831 17 N -0.753 5.753 18 C -0.219 4.219 19 H 0.067 0.933 20 C -0.056 4.056 21 N -0.979 5.979 22 Si 0.941 3.059 23 H -0.281 1.281 24 H -0.264 1.264 25 H -0.294 1.294 26 C 0.062 3.938 27 N -0.265 5.265 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.226 0.774 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.034 0.966 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.361 0.639 44 H 0.257 0.743 45 H 0.140 0.860 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.394 3.905 -0.044 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.065 5.065 4 C -0.139 4.139 5 C -0.231 4.231 6 C -0.209 4.209 7 C 0.382 3.618 8 O -0.447 6.447 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.190 4.190 12 C -0.009 4.009 13 O -0.318 6.318 14 C 0.045 3.955 15 H 0.040 0.960 16 C 0.043 3.957 17 N -0.398 5.398 18 C -0.350 4.350 19 H 0.085 0.915 20 C -0.248 4.248 21 N -0.630 5.630 22 Si 0.770 3.230 23 H -0.208 1.208 24 H -0.189 1.189 25 H -0.221 1.221 26 C -0.063 4.063 27 N -0.102 5.102 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.242 0.758 34 H 0.182 0.818 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.193 0.807 44 H 0.066 0.934 45 H 0.157 0.843 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.794 3.546 -0.860 21.112 hybrid contribution -0.229 1.277 1.371 1.887 sum 20.565 4.823 0.511 21.129 Atomic orbital electron populations 1.22150 0.94199 1.03879 1.02569 1.22408 0.95139 0.75205 1.07540 1.46278 1.33702 1.11508 1.15038 1.23503 0.98314 0.94309 0.97761 1.21940 1.06197 0.97882 0.97087 1.21906 1.05617 0.93400 1.00000 1.17447 0.79013 0.85689 0.79635 1.90714 1.46112 1.37528 1.70334 1.47814 1.41045 1.17672 1.26087 1.22043 0.98223 0.86027 0.95209 1.22402 0.93054 1.04541 0.99021 1.22351 0.97682 0.83248 0.97631 1.86340 1.52778 1.15535 1.77182 1.21969 0.91877 0.87262 0.94417 0.95988 1.20817 0.85797 0.93844 0.95274 1.42640 1.19638 1.17287 1.60201 1.19010 0.97142 0.95157 1.23714 0.91549 1.25273 0.96987 1.00141 1.02351 1.69839 1.11011 1.33630 1.48566 0.85605 0.76792 0.81429 0.79181 1.20759 1.18932 1.22084 1.23140 0.90401 0.91092 1.01652 1.73266 1.21264 0.99168 1.16547 0.88857 0.93800 0.92768 0.87099 0.83829 0.75786 0.81834 0.89555 0.89648 0.89940 0.86655 0.88144 0.94716 0.92176 0.95245 0.80677 0.93440 0.84347 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 10.07 71.98 0.72 -3.14 16 2 C 0.12 1.64 7.10 86.38 0.61 2.25 16 3 N -0.28 -5.64 3.38 -347.94 -1.18 -6.82 16 4 C 0.00 0.07 11.40 83.54 0.95 1.02 16 5 C -0.20 -4.77 10.81 22.41 0.24 -4.53 16 6 C -0.05 -1.48 6.84 42.46 0.29 -1.19 16 7 C 0.59 18.61 7.64 86.75 0.66 19.27 16 8 O -0.57 -20.10 16.22 -3.95 -0.06 -20.16 16 9 N -0.60 -16.40 2.19 -821.52 -1.80 -18.20 16 10 C 0.11 2.36 6.18 86.38 0.53 2.89 16 11 C -0.15 -3.09 5.78 30.31 0.18 -2.91 16 12 C 0.07 1.82 6.37 71.50 0.46 2.27 16 13 O -0.40 -13.91 9.39 -117.90 -1.11 -15.02 16 14 C 0.10 3.59 2.60 31.21 0.08 3.67 16 15 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 16 C 0.17 6.66 5.92 86.38 0.51 7.17 16 17 N -0.75 -36.64 5.34 -343.46 -1.84 -38.48 16 18 C -0.22 -12.48 10.47 84.03 0.88 -11.60 16 19 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 20 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 21 N -0.98 -62.37 13.97 21.65 0.30 -62.07 16 22 Si 0.94 47.22 27.74 68.60 1.90 49.12 16 23 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.26 -12.65 6.51 99.48 0.65 -12.01 16 25 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 26 C 0.06 1.73 4.51 87.25 0.39 2.13 16 27 N -0.27 -7.03 7.99 -48.18 -0.39 -7.42 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.57 5.38 -2.39 -0.01 1.56 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.14 0.87 8.04 -2.39 -0.02 0.85 16 33 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.03 6.96 -2.39 -0.02 2.02 16 37 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 38 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 41 H 0.06 2.26 5.38 -2.39 -0.01 2.24 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.36 17.80 5.51 -92.71 -0.51 17.29 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.14 3.90 4.35 -38.87 -0.17 3.73 16 46 H 0.09 2.37 8.11 -2.39 -0.02 2.35 16 Total: -1.00 -78.24 364.90 3.09 -75.15 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.27 Total: 29.42 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.98 Total: 14.47 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -4.89 Total: -132.98 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.17 Total: -35.18 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -78.24 3.09 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201558861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.909 kcal (2) G-P(sol) polarization free energy of solvation -78.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds