Wall clock time and date at job start Fri Apr 10 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35035 * 126.39465 * 2 1 4 4 N 1.30502 * 108.70254 * 180.02562 * 3 2 1 5 5 C 1.34130 * 109.25224 * 359.75287 * 4 3 2 6 6 C 1.34669 * 108.02020 * 0.40289 * 5 4 3 7 7 C 1.50702 * 126.59240 * 179.87930 * 6 5 4 8 8 C 1.50695 * 109.47522 * 84.67828 * 7 6 5 9 9 O 1.21285 * 119.99906 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00297 * 179.97438 * 8 7 6 11 11 C 1.47510 * 118.75385 * 0.02562 * 10 8 7 12 12 C 1.53574 * 111.02483 * 221.62174 * 11 10 8 13 13 C 1.51541 * 109.57819 * 39.98181 * 12 11 10 14 14 O 1.42153 * 108.75742 * 268.59577 * 13 12 11 15 15 C 1.38017 * 119.43582 * 87.22855 * 14 13 12 16 16 H 1.08997 * 109.47007 * 56.57272 * 15 14 13 17 17 C 1.52998 * 109.47113 * 176.56768 * 15 14 13 18 18 N 1.46506 * 109.47233 * 300.00131 * 17 15 14 19 19 C 1.36931 * 119.99939 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00644 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99715 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99673 * 179.72262 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47274 * 89.99913 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99904 * 23 21 19 27 27 C 1.45120 * 118.75881 * 179.97438 * 10 8 7 28 28 H 1.09006 * 109.47153 * 269.99580 * 1 2 3 29 29 H 1.08994 * 109.47591 * 29.99738 * 1 2 3 30 30 H 1.09004 * 109.47288 * 150.00419 * 1 2 3 31 31 H 1.08004 * 125.65536 * 0.02562 * 3 2 1 32 32 H 1.08002 * 125.99245 * 180.24623 * 5 4 3 33 33 H 1.09002 * 109.46880 * 324.67466 * 7 6 5 34 34 H 1.09005 * 109.46679 * 204.68364 * 7 6 5 35 35 H 1.08996 * 109.16697 * 101.22388 * 11 10 8 36 36 H 1.09000 * 109.16470 * 342.02178 * 11 10 8 37 37 H 1.08994 * 109.45256 * 279.94901 * 12 11 10 38 38 H 1.08999 * 109.45004 * 160.01019 * 12 11 10 39 39 H 1.09007 * 109.58614 * 148.81809 * 13 12 11 40 40 H 1.08992 * 109.59039 * 28.38104 * 13 12 11 41 41 H 1.09001 * 109.47671 * 180.02562 * 17 15 14 42 42 H 1.09006 * 109.47297 * 59.99776 * 17 15 14 43 43 H 0.97000 * 119.99307 * 359.97438 * 18 17 15 44 44 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.45831 * 330.69650 * 27 10 8 46 46 H 1.08998 * 109.45849 * 210.73450 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5460 -0.6504 0.0045 6 6 2.2772 -1.1018 -0.0006 7 6 1.8364 -2.5429 -0.0003 8 6 1.8088 -3.0595 1.4151 9 8 2.1164 -2.3292 2.3333 10 7 1.4413 -4.3327 1.6608 11 6 1.0721 -5.1967 0.5236 12 6 -0.1588 -6.0520 0.8583 13 6 -1.1568 -5.2215 1.6397 14 8 -0.8975 -5.3823 3.0281 15 6 0.0228 -4.5599 3.6459 16 1 -0.2635 -3.5187 3.4979 17 6 0.0599 -4.8706 5.1436 18 7 -1.2661 -4.6415 5.7229 19 6 -1.4759 -4.8559 7.0589 20 1 -0.6640 -5.1944 7.6856 21 6 -2.7322 -4.6383 7.6079 22 7 -2.9352 -4.8497 8.8911 23 14 -4.1366 -4.0537 6.5239 24 1 -4.8560 -5.2285 5.9693 25 1 -5.0760 -3.2336 7.3304 26 1 -3.5946 -3.2343 5.4105 27 6 1.4249 -4.8022 3.0338 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9334 2.1144 0.0004 32 1 4.4368 -1.2611 0.0092 33 1 2.5346 -3.1366 -0.5903 34 1 0.8391 -2.6178 -0.4340 35 1 1.9096 -5.8525 0.2857 36 1 0.8500 -4.5731 -0.3423 37 1 0.1472 -6.9099 1.4568 38 1 -0.6207 -6.4003 -0.0655 39 1 -2.1686 -5.5596 1.4154 40 1 -1.0513 -4.1715 1.3674 41 1 0.7864 -4.2209 5.6316 42 1 0.3460 -5.9120 5.2917 43 1 -1.9954 -4.3379 5.1599 44 1 -3.8131 -4.6980 9.2747 45 1 2.1730 -4.2598 3.6120 46 1 1.6518 -5.8681 3.0559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201857251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:43 Heat of formation + Delta-G solvation = 14.584673 kcal Electronic energy + Delta-G solvation = -28216.548570 eV Core-core repulsion = 24336.672078 eV Total energy + Delta-G solvation = -3879.876493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33422 -40.65811 -38.62576 -35.83080 -34.79330 -34.29985 -33.09360 -32.47558 -31.17644 -29.37027 -27.66095 -27.24594 -26.59195 -25.09041 -22.57383 -21.82047 -21.66037 -21.08948 -20.55737 -19.08089 -17.79377 -17.60849 -17.34810 -16.67622 -16.41742 -16.11893 -15.83114 -15.23646 -14.75664 -14.59352 -14.34659 -14.04545 -13.93180 -13.73436 -13.45351 -13.29689 -13.18150 -12.91232 -12.88373 -12.75499 -12.59925 -12.35403 -12.13549 -11.87379 -11.53894 -11.25417 -10.98238 -10.83947 -10.41960 -10.15598 -10.13459 -10.01055 -9.74564 -9.59213 -9.54920 -8.86465 -8.71543 -8.54535 -7.17444 -5.72150 -3.06506 1.73947 2.37216 2.51813 2.74601 3.05131 3.40893 3.44740 3.47581 3.76149 4.16694 4.26917 4.34853 4.41416 4.48492 4.53736 4.61838 4.64190 4.71848 4.76801 4.93387 5.03431 5.07246 5.13905 5.16734 5.22210 5.27370 5.35449 5.44581 5.53550 5.57692 5.65983 5.77044 5.82269 5.91381 5.97841 6.09048 6.35070 6.52517 6.55208 6.65831 6.95011 7.06351 7.79393 7.88615 7.96086 8.04101 8.46949 9.26573 9.98986 10.19962 11.46442 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003419 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.193994 B = 8187.131933 C = 8955.810154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C 0.184 3.816 4 N -0.494 5.494 5 C -0.007 4.007 6 C -0.012 4.012 7 C -0.063 4.063 8 C 0.504 3.496 9 O -0.516 6.516 10 N -0.611 5.611 11 C 0.104 3.896 12 C -0.168 4.168 13 C 0.073 3.927 14 O -0.371 6.371 15 C 0.086 3.914 16 H 0.049 0.951 17 C 0.170 3.830 18 N -0.749 5.749 19 C -0.241 4.241 20 H 0.091 0.909 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.082 3.918 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.205 0.795 32 H 0.166 0.834 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.364 0.636 44 H 0.259 0.741 45 H 0.095 0.905 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 3.304 -27.568 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.137 5.137 3 C -0.098 4.098 4 N -0.211 5.211 5 C -0.155 4.155 6 C -0.127 4.127 7 C -0.104 4.104 8 C 0.291 3.709 9 O -0.391 6.391 10 N -0.345 5.345 11 C -0.018 4.018 12 C -0.206 4.206 13 C -0.004 4.004 14 O -0.289 6.289 15 C 0.026 3.974 16 H 0.067 0.933 17 C 0.042 3.958 18 N -0.395 5.395 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.206 1.206 27 C -0.041 4.041 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.221 0.779 32 H 0.184 0.816 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.197 0.803 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.324 4.013 -26.730 28.282 hybrid contribution -1.774 0.028 -0.894 1.987 sum 6.550 4.041 -27.624 28.676 Atomic orbital electron populations 1.22067 0.76728 1.04409 1.04137 1.45200 1.07496 1.06672 1.54321 1.24901 0.85605 0.93324 1.05946 1.70274 1.19385 1.11867 1.19621 1.21961 0.95443 0.91152 1.06971 1.20390 0.91412 0.88336 1.12525 1.20080 1.03844 0.90807 0.95630 1.20605 0.77455 0.81730 0.91124 1.90787 1.46682 1.55571 1.46024 1.47954 1.67356 1.11616 1.07610 1.22022 0.97849 0.93900 0.88050 1.22510 0.96073 1.00061 1.01939 1.22127 0.98251 0.98324 0.81691 1.86430 1.60840 1.59753 1.21881 1.22340 0.87272 0.93663 0.94165 0.93338 1.20603 0.89448 0.99081 0.86619 1.42541 1.06956 1.82516 1.07495 1.19072 0.96861 1.37741 0.83393 0.89160 1.24647 0.97215 1.01703 0.95650 1.69706 1.22605 1.55461 1.10612 0.86494 0.83181 0.78596 0.79957 1.21031 1.21852 1.20599 1.22411 0.99569 1.00867 0.81281 0.90134 0.89143 0.89956 0.77868 0.81642 0.86628 0.88510 0.91086 0.90102 0.89661 0.89576 0.89293 0.93775 0.93914 0.94624 0.80331 0.93121 0.88630 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.00 59.85 0.66 1.09 16 2 N -0.45 -4.44 3.15 -121.36 -0.38 -4.83 16 3 C 0.18 1.94 12.56 -90.38 -1.14 0.80 16 4 N -0.49 -6.61 11.25 -14.66 -0.16 -6.77 16 5 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 6 C -0.01 -0.13 5.45 -81.60 -0.44 -0.57 16 7 C -0.06 -0.49 4.37 -29.04 -0.13 -0.62 16 8 C 0.50 5.94 7.62 -10.99 -0.08 5.86 16 9 O -0.52 -8.64 15.46 5.55 0.09 -8.55 16 10 N -0.61 -6.41 2.19 -172.41 -0.38 -6.78 16 11 C 0.10 0.69 6.00 -3.19 -0.02 0.67 16 12 C -0.17 -1.27 5.79 -27.17 -0.16 -1.42 16 13 C 0.07 0.80 6.37 36.42 0.23 1.03 16 14 O -0.37 -5.92 9.18 -26.54 -0.24 -6.16 16 15 C 0.09 1.41 2.74 -25.73 -0.07 1.34 16 16 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 17 C 0.17 3.46 5.95 -4.04 -0.02 3.44 16 18 N -0.75 -18.87 5.29 -59.90 -0.32 -19.18 16 19 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.94 -30.11 13.97 55.49 0.78 -29.33 16 23 Si 0.89 22.93 27.74 -169.99 -4.71 18.21 16 24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.28 -6.88 6.52 56.52 0.37 -6.52 16 27 C 0.08 1.08 4.87 -3.78 -0.02 1.06 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.38 7.12 -51.93 -0.37 0.01 16 31 H 0.20 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.10 0.53 6.36 -51.93 -0.33 0.20 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.33 5.88 -51.93 -0.31 0.03 16 37 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.47 7.40 -51.93 -0.38 0.08 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.36 9.09 5.39 -40.82 -0.22 8.87 16 44 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 45 H 0.10 1.38 7.27 -51.93 -0.38 1.01 16 46 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -39.47 370.66 -8.47 -47.94 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.06 Total: 4.74 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.65 Total: 5.14 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.47 Total: -66.90 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.16 Total: -14.72 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.47 -8.47 -47.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201857251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.524 kcal (2) G-P(sol) polarization free energy of solvation -39.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds