Wall clock time and date at job start Fri Apr 10 2020 18:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35035 * 126.39465 * 2 1 4 4 N 1.30502 * 108.70254 * 180.02562 * 3 2 1 5 5 C 1.34130 * 109.25224 * 359.75287 * 4 3 2 6 6 C 1.34669 * 108.02020 * 0.40289 * 5 4 3 7 7 C 1.50702 * 126.59240 * 179.87930 * 6 5 4 8 8 C 1.50695 * 109.47522 * 84.67828 * 7 6 5 9 9 O 1.21285 * 119.99906 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00297 * 179.97438 * 8 7 6 11 11 C 1.47510 * 118.75385 * 0.02562 * 10 8 7 12 12 C 1.53574 * 111.02483 * 221.62174 * 11 10 8 13 13 C 1.51541 * 109.57819 * 39.98181 * 12 11 10 14 14 O 1.42153 * 108.75742 * 268.59577 * 13 12 11 15 15 C 1.38017 * 119.43582 * 87.22855 * 14 13 12 16 16 H 1.08997 * 109.47007 * 56.57272 * 15 14 13 17 17 C 1.52998 * 109.47113 * 176.56768 * 15 14 13 18 18 N 1.46506 * 109.47233 * 300.00131 * 17 15 14 19 19 C 1.36931 * 119.99939 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00644 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99715 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99673 * 179.72262 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47274 * 89.99913 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99904 * 23 21 19 27 27 C 1.45120 * 118.75881 * 179.97438 * 10 8 7 28 28 H 1.09006 * 109.47153 * 269.99580 * 1 2 3 29 29 H 1.08994 * 109.47591 * 29.99738 * 1 2 3 30 30 H 1.09004 * 109.47288 * 150.00419 * 1 2 3 31 31 H 1.08004 * 125.65536 * 0.02562 * 3 2 1 32 32 H 1.08002 * 125.99245 * 180.24623 * 5 4 3 33 33 H 1.09002 * 109.46880 * 324.67466 * 7 6 5 34 34 H 1.09005 * 109.46679 * 204.68364 * 7 6 5 35 35 H 1.08996 * 109.16697 * 101.22388 * 11 10 8 36 36 H 1.09000 * 109.16470 * 342.02178 * 11 10 8 37 37 H 1.08994 * 109.45256 * 279.94901 * 12 11 10 38 38 H 1.08999 * 109.45004 * 160.01019 * 12 11 10 39 39 H 1.09007 * 109.58614 * 148.81809 * 13 12 11 40 40 H 1.08992 * 109.59039 * 28.38104 * 13 12 11 41 41 H 1.09001 * 109.47671 * 180.02562 * 17 15 14 42 42 H 1.09006 * 109.47297 * 59.99776 * 17 15 14 43 43 H 0.97000 * 119.99307 * 359.97438 * 18 17 15 44 44 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.45831 * 330.69650 * 27 10 8 46 46 H 1.08998 * 109.45849 * 210.73450 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5460 -0.6504 0.0045 6 6 2.2772 -1.1018 -0.0006 7 6 1.8364 -2.5429 -0.0003 8 6 1.8088 -3.0595 1.4151 9 8 2.1164 -2.3292 2.3333 10 7 1.4413 -4.3327 1.6608 11 6 1.0721 -5.1967 0.5236 12 6 -0.1588 -6.0520 0.8583 13 6 -1.1568 -5.2215 1.6397 14 8 -0.8975 -5.3823 3.0281 15 6 0.0228 -4.5599 3.6459 16 1 -0.2635 -3.5187 3.4979 17 6 0.0599 -4.8706 5.1436 18 7 -1.2661 -4.6415 5.7229 19 6 -1.4759 -4.8559 7.0589 20 1 -0.6640 -5.1944 7.6856 21 6 -2.7322 -4.6383 7.6079 22 7 -2.9352 -4.8497 8.8911 23 14 -4.1366 -4.0537 6.5239 24 1 -4.8560 -5.2285 5.9693 25 1 -5.0760 -3.2336 7.3304 26 1 -3.5946 -3.2343 5.4105 27 6 1.4249 -4.8022 3.0338 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9334 2.1144 0.0004 32 1 4.4368 -1.2611 0.0092 33 1 2.5346 -3.1366 -0.5903 34 1 0.8391 -2.6178 -0.4340 35 1 1.9096 -5.8525 0.2857 36 1 0.8500 -4.5731 -0.3423 37 1 0.1472 -6.9099 1.4568 38 1 -0.6207 -6.4003 -0.0655 39 1 -2.1686 -5.5596 1.4154 40 1 -1.0513 -4.1715 1.3674 41 1 0.7864 -4.2209 5.6316 42 1 0.3460 -5.9120 5.2917 43 1 -1.9954 -4.3379 5.1599 44 1 -3.8131 -4.6980 9.2747 45 1 2.1730 -4.2598 3.6120 46 1 1.6518 -5.8681 3.0559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201857251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:42 Heat of formation + Delta-G solvation = -13.425175 kcal Electronic energy + Delta-G solvation = -28217.763168 eV Core-core repulsion = 24336.672078 eV Total energy + Delta-G solvation = -3881.091091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.07809 -41.59581 -39.69928 -37.03792 -36.30673 -35.00223 -34.40992 -33.33438 -32.95717 -30.59509 -28.72406 -27.83515 -27.35971 -26.49306 -24.20918 -22.94869 -22.43698 -22.33698 -21.34190 -19.86373 -19.83406 -18.53190 -18.10144 -17.71801 -17.45546 -17.07323 -16.56073 -16.45898 -16.19826 -15.77267 -15.34280 -15.14787 -14.87392 -14.80399 -14.70508 -14.44919 -14.03969 -14.01085 -13.84867 -13.73204 -13.54063 -13.41038 -13.25733 -13.00390 -12.86382 -12.58850 -12.36328 -12.12295 -12.01956 -11.85100 -11.50065 -11.05367 -10.99551 -10.95607 -10.58748 -10.50303 -9.67127 -9.34876 -9.32549 -8.06021 -5.39568 0.98107 1.32935 1.37991 1.45112 1.53147 1.85698 1.99716 2.23465 2.45528 2.67471 3.25245 3.44221 3.48001 3.62118 3.84482 3.87641 3.93795 3.94332 4.01907 4.03097 4.07738 4.26382 4.27156 4.30759 4.40987 4.46901 4.48507 4.53662 4.65538 4.69475 4.75237 4.79480 4.83591 4.89877 5.04643 5.13666 5.21325 5.37074 5.51108 5.69971 5.76711 6.17297 6.23484 6.31110 6.70162 7.03219 7.10275 7.12105 7.78546 7.99575 9.15593 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003419 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.193994 B = 8187.131933 C = 8955.810154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.456 5.456 3 C 0.177 3.823 4 N -0.538 5.538 5 C -0.040 4.040 6 C -0.014 4.014 7 C -0.053 4.053 8 C 0.501 3.499 9 O -0.577 6.577 10 N -0.607 5.607 11 C 0.098 3.902 12 C -0.159 4.159 13 C 0.061 3.939 14 O -0.399 6.399 15 C 0.106 3.894 16 H 0.027 0.973 17 C 0.164 3.836 18 N -0.752 5.752 19 C -0.239 4.239 20 H 0.057 0.943 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.961 3.039 24 H -0.274 1.274 25 H -0.291 1.291 26 H -0.261 1.261 27 C 0.094 3.906 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.344 2.845 -31.945 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.138 5.138 3 C -0.105 4.105 4 N -0.257 5.257 5 C -0.188 4.188 6 C -0.130 4.130 7 C -0.093 4.093 8 C 0.290 3.710 9 O -0.456 6.456 10 N -0.339 5.339 11 C -0.023 4.023 12 C -0.197 4.197 13 C -0.015 4.015 14 O -0.318 6.318 15 C 0.045 3.955 16 H 0.045 0.955 17 C 0.037 3.963 18 N -0.398 5.398 19 C -0.369 4.369 20 H 0.075 0.925 21 C -0.255 4.255 22 N -0.633 5.633 23 Si 0.788 3.212 24 H -0.199 1.199 25 H -0.218 1.218 26 H -0.186 1.186 27 C -0.031 4.031 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.250 0.750 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.200 0.800 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.007 3.518 -31.186 32.157 hybrid contribution -1.318 0.124 0.490 1.411 sum 5.689 3.642 -30.696 31.430 Atomic orbital electron populations 1.22337 0.74604 1.07009 1.03878 1.45460 1.08823 1.06193 1.53360 1.25513 0.85221 0.94827 1.04977 1.70205 1.21337 1.12781 1.21332 1.22237 0.96738 0.91247 1.08574 1.20772 0.91110 0.89849 1.11255 1.20208 1.06695 0.89191 0.93219 1.21307 0.76072 0.81428 0.92148 1.90773 1.49446 1.57211 1.48163 1.48047 1.66606 1.11901 1.07363 1.22418 0.98285 0.94300 0.87276 1.22450 0.95616 0.98955 1.02696 1.22491 1.00049 0.99556 0.79359 1.86354 1.60864 1.59565 1.25017 1.21868 0.89519 0.92327 0.91764 0.95528 1.20743 0.86989 0.98774 0.89802 1.42530 1.08856 1.82425 1.05965 1.19069 0.96095 1.36723 0.85055 0.92462 1.25515 1.00265 1.02506 0.97186 1.69886 1.23401 1.57206 1.12804 0.85326 0.79163 0.78436 0.78324 1.19939 1.21759 1.18608 1.22067 0.96635 1.01473 0.82940 0.91684 0.86392 0.87719 0.74989 0.81368 0.83198 0.85035 0.88815 0.86463 0.91051 0.85905 0.88285 0.93266 0.94762 0.94506 0.80044 0.93177 0.90717 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 11.00 127.77 1.41 2.01 16 2 N -0.46 -8.07 3.15 -537.88 -1.70 -9.76 16 3 C 0.18 3.56 12.56 180.26 2.26 5.83 16 4 N -0.54 -14.48 11.25 -200.31 -2.25 -16.73 16 5 C -0.04 -0.98 11.79 83.52 0.98 0.01 16 6 C -0.01 -0.28 5.45 40.95 0.22 -0.05 16 7 C -0.05 -0.63 4.37 29.10 0.13 -0.51 16 8 C 0.50 10.78 7.62 87.65 0.67 11.45 16 9 O -0.58 -19.44 15.46 -3.04 -0.05 -19.48 16 10 N -0.61 -11.06 2.19 -817.78 -1.79 -12.85 16 11 C 0.10 0.78 6.00 86.38 0.52 1.30 16 12 C -0.16 -1.66 5.79 30.31 0.18 -1.49 16 13 C 0.06 1.13 6.37 71.50 0.46 1.59 16 14 O -0.40 -12.09 9.18 -117.90 -1.08 -13.18 16 15 C 0.11 3.44 2.74 31.24 0.09 3.53 16 16 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 17 C 0.16 6.83 5.95 86.38 0.51 7.34 16 18 N -0.75 -38.31 5.29 -343.44 -1.82 -40.13 16 19 C -0.24 -14.46 10.47 84.04 0.88 -13.58 16 20 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 21 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.98 -64.89 13.97 21.65 0.30 -64.59 16 23 Si 0.96 47.52 27.74 68.60 1.90 49.42 16 24 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.26 -11.96 6.52 99.48 0.65 -11.31 16 27 C 0.09 2.38 4.87 87.29 0.43 2.81 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.51 7.12 -2.38 -0.02 0.49 16 31 H 0.23 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.15 0.80 8.04 -2.39 -0.02 0.78 16 34 H 0.13 0.67 6.36 -2.38 -0.02 0.66 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.12 0.14 5.88 -2.39 -0.01 0.13 16 37 H 0.07 1.01 8.01 -2.39 -0.02 0.99 16 38 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 0.86 7.40 -2.39 -0.02 0.85 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.37 18.08 5.39 -92.71 -0.50 17.58 16 44 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 45 H 0.07 2.22 7.27 -2.39 -0.02 2.21 16 46 H 0.10 2.24 8.11 -2.39 -0.02 2.22 16 Total: -1.00 -91.78 370.66 3.14 -88.64 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.43 Total: 21.86 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 9.19 Total: 16.80 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -7.25 Total: -144.06 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.13 Total: -32.66 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.90 Total: 49.42 kcal Total: -91.78 3.14 -88.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201857251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.212 kcal (2) G-P(sol) polarization free energy of solvation -91.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds