Wall clock time and date at job start Fri Apr 10 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46966 * 2 1 4 4 C 1.35856 * 126.12987 * 269.97475 * 3 2 1 5 5 N 1.30178 * 108.99618 * 179.78152 * 4 3 2 6 6 C 1.35754 * 108.86812 * 0.38387 * 5 4 3 7 7 C 1.47330 * 126.23468 * 179.88101 * 6 5 4 8 8 O 1.21618 * 120.00020 * 186.34365 * 7 6 5 9 9 N 1.34779 * 119.99678 * 6.34478 * 7 6 5 10 10 C 1.47510 * 118.75570 * 177.04478 * 9 7 6 11 11 C 1.53563 * 111.02875 * 138.34494 * 10 9 7 12 12 C 1.51538 * 109.58442 * 320.02143 * 11 10 9 13 13 O 1.42151 * 108.75080 * 91.40028 * 12 11 10 14 14 C 1.38016 * 119.44102 * 272.77348 * 13 12 11 15 15 H 1.09002 * 109.47325 * 303.42209 * 14 13 12 16 16 C 1.53010 * 109.46977 * 183.43143 * 14 13 12 17 17 N 1.46496 * 109.46979 * 64.99086 * 16 14 13 18 18 C 1.36936 * 119.99821 * 179.72925 * 17 16 14 19 19 H 1.07997 * 120.00175 * 0.26502 * 18 17 16 20 20 C 1.38819 * 119.99810 * 180.27840 * 18 17 16 21 21 N 1.31614 * 120.00055 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47217 * 59.99510 * 22 20 18 24 24 H 1.48500 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46970 * 299.99744 * 22 20 18 26 26 C 1.45118 * 118.76041 * 357.02474 * 9 7 6 27 27 C 1.35376 * 126.13837 * 89.99866 * 3 2 1 28 28 H 1.08998 * 109.46741 * 60.00168 * 1 2 3 29 29 H 1.08996 * 109.46604 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47064 * 300.00197 * 1 2 3 31 31 H 1.08997 * 109.47272 * 240.00285 * 2 1 3 32 32 H 1.09003 * 109.47216 * 119.99278 * 2 1 3 33 33 H 1.08000 * 125.50031 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.16936 * 258.74701 * 10 9 7 35 35 H 1.09008 * 109.16415 * 17.94734 * 10 9 7 36 36 H 1.08997 * 109.45259 * 80.05942 * 11 10 9 37 37 H 1.08998 * 109.45347 * 199.99186 * 11 10 9 38 38 H 1.09000 * 109.59424 * 211.18310 * 12 11 10 39 39 H 1.09003 * 109.58968 * 331.62407 * 12 11 10 40 40 H 1.09000 * 109.47092 * 304.99090 * 16 14 13 41 41 H 1.09000 * 109.46956 * 184.98773 * 16 14 13 42 42 H 0.97002 * 120.00455 * 0.02562 * 17 16 14 43 43 H 0.97002 * 120.00069 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.46254 * 149.28223 * 26 9 7 45 45 H 1.09000 * 109.46102 * 29.32235 * 26 9 7 46 46 H 1.08004 * 126.56056 * 359.95725 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2858 2.1363 -1.0973 5 7 2.6959 3.3108 -0.7138 6 6 2.7141 3.3480 0.6431 7 6 3.1183 4.4929 1.4776 8 8 3.2020 4.3664 2.6843 9 7 3.3953 5.6805 0.9037 10 6 3.7331 6.8257 1.7699 11 6 4.8973 7.6366 1.1822 12 6 5.9295 6.6933 0.5982 13 8 5.6284 6.4796 -0.7745 14 6 4.7500 5.4754 -1.1280 15 1 5.1072 4.5244 -0.7328 16 6 4.6583 5.3915 -2.6530 17 7 5.9549 4.9823 -3.1984 18 6 6.1128 4.8339 -4.5505 19 1 5.2827 5.0226 -5.2151 20 6 7.3399 4.4405 -5.0669 21 7 8.3516 4.2107 -4.2570 22 14 7.5552 4.2373 -6.9113 23 1 7.2793 5.5304 -7.5873 24 1 8.9482 3.8139 -7.2034 25 1 6.6093 3.2066 -7.4094 26 6 3.3504 5.7842 -0.5431 27 6 2.2845 2.1340 1.0933 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 2.1724 1.8154 -2.1222 34 1 2.8602 7.4712 1.8664 35 1 4.0154 6.4573 2.7562 36 1 4.5222 8.2946 0.3984 37 1 5.3565 8.2349 1.9691 38 1 6.9218 7.1349 0.6903 39 1 5.8992 5.7430 1.1313 40 1 4.3868 6.3677 -3.0549 41 1 3.8997 4.6601 -2.9317 42 1 6.7004 4.8124 -2.6015 43 1 9.2091 3.9362 -4.6179 44 1 3.0534 6.7941 -0.8258 45 1 2.6269 5.0698 -0.9361 46 1 2.1768 1.8314 2.1245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201862586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:46 Heat of formation + Delta-G solvation = 17.694804 kcal Electronic energy + Delta-G solvation = -28495.696520 eV Core-core repulsion = 24615.954893 eV Total energy + Delta-G solvation = -3879.741627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34160 -40.05242 -38.19110 -35.38866 -35.12174 -34.46124 -32.87175 -30.89847 -30.55811 -29.69111 -28.44660 -26.56446 -25.12605 -24.24349 -23.21567 -22.28854 -21.18793 -20.84084 -20.68629 -19.19710 -17.51062 -17.06251 -16.68193 -16.34000 -16.09793 -15.71366 -15.29296 -14.98219 -14.56396 -14.46935 -14.21113 -14.08100 -13.89190 -13.59278 -13.20568 -12.95652 -12.88877 -12.85433 -12.55838 -12.32770 -12.05951 -11.94130 -11.78004 -11.59894 -11.12121 -10.80920 -10.70829 -10.58599 -10.19717 -10.11167 -9.92391 -9.87646 -9.57567 -9.48249 -9.14983 -8.72681 -8.72534 -8.21094 -6.72699 -5.60692 -2.87500 1.54472 2.39064 2.44427 3.15241 3.51791 3.55869 3.57290 3.58519 4.22055 4.22588 4.34873 4.49226 4.59813 4.71089 4.77608 4.85434 5.00795 5.07273 5.13867 5.18321 5.29176 5.36623 5.50370 5.56538 5.56901 5.63678 5.72007 5.77022 5.84980 5.94177 5.94925 6.06302 6.16955 6.25057 6.35487 6.49034 6.57669 6.71265 6.92028 6.98508 7.03780 7.47977 7.78455 7.81771 8.25535 8.32823 8.58066 9.68870 10.30972 10.66489 11.62470 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004519 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.555712 B = 6195.130636 C = 8611.719182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.457 5.457 4 C 0.193 3.807 5 N -0.448 5.448 6 C -0.062 4.062 7 C 0.599 3.401 8 O -0.556 6.556 9 N -0.594 5.594 10 C 0.110 3.890 11 C -0.164 4.164 12 C 0.075 3.925 13 O -0.374 6.374 14 C 0.099 3.901 15 H 0.047 0.953 16 C 0.172 3.828 17 N -0.727 5.727 18 C -0.231 4.231 19 H 0.069 0.931 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.056 3.944 27 C 0.032 3.968 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.212 0.788 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.021 0.979 41 H 0.041 0.959 42 H 0.385 0.615 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 -5.206 13.091 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.139 5.139 4 C -0.090 4.090 5 N -0.166 5.166 6 C -0.191 4.191 7 C 0.388 3.612 8 O -0.435 6.435 9 N -0.325 5.325 10 C -0.012 4.012 11 C -0.202 4.202 12 C -0.002 4.002 13 O -0.293 6.293 14 C 0.039 3.961 15 H 0.065 0.935 16 C 0.044 3.956 17 N -0.370 5.370 18 C -0.363 4.363 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.215 1.215 26 C -0.067 4.067 27 C -0.107 4.107 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.219 0.781 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.154 0.846 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.836 -4.597 12.893 21.698 hybrid contribution 0.125 -0.984 -0.196 1.011 sum -16.711 -5.581 12.697 21.717 Atomic orbital electron populations 1.22174 0.93845 1.03339 1.03433 1.21969 0.95748 0.79496 1.05244 1.45573 1.48364 1.13092 1.06848 1.25458 1.02500 0.87386 0.93695 1.70716 1.17767 1.18404 1.09749 1.20470 1.12471 0.95356 0.90765 1.17112 0.76426 0.81553 0.86147 1.90740 1.54824 1.83885 1.14028 1.47724 1.67444 1.09471 1.07837 1.21821 0.97554 0.87155 0.94653 1.22482 0.96854 0.99267 1.01637 1.22069 0.97371 0.97788 0.82956 1.86400 1.64215 1.54895 1.23750 1.22143 0.87447 0.89685 0.96787 0.93518 1.20560 0.90325 0.97355 0.87391 1.42248 1.08135 1.81933 1.04732 1.19194 0.95839 1.37623 0.83627 0.91338 1.24705 0.96106 1.03026 0.97382 1.69671 1.01851 1.53672 1.33136 0.86296 0.76574 0.77748 0.85742 1.21392 1.21862 1.21480 1.23250 1.01486 1.04017 0.77972 1.22465 1.03360 0.91760 0.93114 0.91510 0.90388 0.91798 0.88210 0.88794 0.77140 0.91907 0.89287 0.90210 0.89970 0.89586 0.93597 0.96135 0.94147 0.78118 0.93708 0.91140 0.84571 0.79914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.10 0.51 6.84 -4.04 -0.03 0.48 16 3 N -0.46 -4.25 2.73 -118.35 -0.32 -4.58 16 4 C 0.19 2.16 12.55 -89.89 -1.13 1.04 16 5 N -0.45 -6.48 7.16 -11.03 -0.08 -6.56 16 6 C -0.06 -0.91 6.63 -83.09 -0.55 -1.46 16 7 C 0.60 9.78 7.63 -12.56 -0.10 9.69 16 8 O -0.56 -9.95 16.18 5.26 0.09 -9.87 16 9 N -0.59 -9.11 2.19 -173.78 -0.38 -9.49 16 10 C 0.11 1.45 6.17 -3.20 -0.02 1.43 16 11 C -0.16 -2.08 5.78 -27.18 -0.16 -2.24 16 12 C 0.08 1.20 6.38 36.42 0.23 1.43 16 13 O -0.37 -7.41 9.38 -26.54 -0.25 -7.66 16 14 C 0.10 1.90 2.24 -25.77 -0.06 1.85 16 15 H 0.05 1.00 8.03 -51.93 -0.42 0.59 16 16 C 0.17 3.76 5.92 -4.04 -0.02 3.74 16 17 N -0.73 -19.74 5.54 -59.91 -0.33 -20.07 16 18 C -0.23 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.43 13.06 55.49 0.72 -28.70 16 22 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.06 0.90 4.46 -3.83 -0.02 0.88 16 27 C 0.03 0.37 11.27 -16.64 -0.19 0.18 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.21 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.21 6.96 -51.92 -0.36 0.85 16 36 H 0.08 1.05 8.01 -51.93 -0.42 0.63 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.77 7.40 -51.93 -0.38 0.39 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.39 11.30 7.65 -40.82 -0.31 10.98 16 43 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 45 H 0.14 2.16 4.61 -54.52 -0.25 1.91 16 46 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -36.62 373.16 -9.04 -45.66 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.18 Total: 8.55 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.90 Total: 9.18 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.39 Total: -69.40 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.16 Total: -17.53 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.62 -9.04 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201862586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.350 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds