Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99777 * 2 1 4 4 H 1.09001 * 110.64214 * 26.85449 * 3 2 1 5 5 C 1.54322 * 110.86861 * 263.60458 * 3 2 1 6 6 N 1.47021 * 107.26948 * 219.37322 * 5 3 2 7 7 C 1.36941 * 125.64650 * 178.98972 * 6 5 3 8 8 H 1.08001 * 119.99591 * 174.78932 * 7 6 5 9 9 C 1.38812 * 120.00119 * 354.78985 * 7 6 5 10 10 N 1.31614 * 120.00107 * 7.04918 * 9 7 6 11 11 Si 1.86799 * 120.00011 * 187.05563 * 9 7 6 12 12 H 1.48499 * 109.47423 * 94.98305 * 11 9 7 13 13 H 1.48500 * 109.47198 * 214.98650 * 11 9 7 14 14 H 1.48499 * 109.47257 * 334.98377 * 11 9 7 15 15 C 1.47425 * 108.70699 * 358.94407 * 6 5 3 16 16 C 1.54908 * 104.82917 * 24.12602 * 15 6 5 17 17 H 1.09000 * 111.03495 * 81.08183 * 16 15 6 18 18 N 1.46496 * 111.00594 * 204.91880 * 16 15 6 19 19 C 1.34776 * 120.00179 * 267.19845 * 18 16 15 20 20 O 1.21289 * 119.99693 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00687 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47686 * 180.02562 * 21 19 18 23 23 C 1.50703 * 109.47274 * 179.97438 * 22 21 19 24 24 C 1.35316 * 126.12205 * 85.02147 * 23 22 21 25 25 C 1.39879 * 107.91663 * 179.97438 * 24 23 22 26 26 N 1.30837 * 108.19914 * 359.74233 * 25 24 23 27 27 N 1.34941 * 126.13089 * 264.99963 * 23 22 21 28 28 C 1.46500 * 126.03524 * 359.97438 * 27 23 22 29 29 H 1.09001 * 109.47179 * 60.00558 * 1 2 3 30 30 H 1.09008 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47766 * 300.00278 * 1 2 3 32 32 H 1.09000 * 109.88601 * 338.79297 * 5 3 2 33 33 H 1.09007 * 109.88340 * 99.96120 * 5 3 2 34 34 H 0.96991 * 120.00330 * 180.02562 * 10 9 7 35 35 H 1.08998 * 110.36508 * 265.29336 * 15 6 5 36 36 H 1.08999 * 110.36754 * 142.96605 * 15 6 5 37 37 H 0.96998 * 120.00120 * 87.19453 * 18 16 15 38 38 H 1.08996 * 109.47010 * 59.99675 * 21 19 18 39 39 H 1.09011 * 109.47159 * 300.00329 * 21 19 18 40 40 H 1.08996 * 109.47254 * 59.99711 * 22 21 19 41 41 H 1.09001 * 109.46778 * 299.99820 * 22 21 19 42 42 H 1.08002 * 126.04540 * 359.97438 * 24 23 22 43 43 H 1.07996 * 125.89791 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.46995 * 90.00012 * 28 27 23 45 45 H 1.09007 * 109.47197 * 330.00659 * 28 27 23 46 46 H 1.09002 * 109.47552 * 210.00226 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0266 0.4608 5 6 2.3805 1.7423 -1.4330 6 7 3.6669 2.4499 -1.3549 7 6 4.3516 2.9804 -2.4155 8 1 5.2494 3.5561 -2.2452 9 6 3.8918 2.7783 -3.7096 10 7 2.7278 2.1981 -3.9113 11 14 4.9252 3.3297 -5.1648 12 1 5.7395 2.1885 -5.6544 13 1 4.0337 3.8047 -6.2533 14 1 5.8239 4.4342 -4.7435 15 6 4.0971 2.4947 0.0545 16 6 3.3816 1.2958 0.7257 17 1 3.9169 0.3652 0.5371 18 7 3.2163 1.5210 2.1637 19 6 4.1463 1.0689 3.0280 20 8 5.1200 0.4750 2.6152 21 6 3.9767 1.3010 4.5073 22 6 5.1628 0.6930 5.2584 23 6 4.9933 0.9258 6.7377 24 6 4.2838 0.1514 7.5909 25 6 4.3827 0.7152 8.8672 26 7 5.1295 1.7862 8.7841 27 7 5.5223 1.9433 7.4488 28 6 6.3645 3.0186 6.9190 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8898 32 1 2.4776 0.8663 -2.0743 33 1 1.6138 2.4096 -1.8270 34 1 2.4066 2.0566 -4.8155 35 1 3.7840 3.4306 0.5171 36 1 5.1786 2.3788 0.1249 37 1 2.4374 1.9957 2.4939 38 1 3.0529 0.8314 4.8451 39 1 3.9328 2.3723 4.7043 40 1 6.0864 1.1630 4.9205 41 1 5.2070 -0.3782 5.0615 42 1 3.7376 -0.7437 7.3322 43 1 3.9256 0.3301 9.7667 44 1 5.7353 3.8504 6.6023 45 1 6.9332 2.6480 6.0660 46 1 7.0517 3.3575 7.6943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212353623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = 25.422493 kcal Electronic energy + Delta-G solvation = -27107.517282 eV Core-core repulsion = 23228.110753 eV Total energy + Delta-G solvation = -3879.406529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47598 -39.79341 -38.21139 -35.96328 -34.33677 -34.05915 -33.19611 -31.81008 -29.72385 -28.72762 -27.22757 -26.96159 -26.14496 -25.00301 -23.84737 -21.37385 -20.76390 -20.54661 -19.98960 -19.80132 -17.59904 -17.09259 -16.52745 -16.32316 -15.71816 -15.65454 -15.52615 -14.83617 -14.66523 -14.43669 -14.21502 -14.09657 -13.79650 -13.40808 -13.19791 -13.09743 -12.97513 -12.67102 -12.42785 -12.27932 -12.22099 -11.92659 -11.62163 -11.37836 -11.25017 -11.05274 -10.84160 -10.83004 -10.77217 -10.18458 -10.03573 -9.86394 -9.80021 -9.48895 -9.17186 -8.78538 -8.73229 -8.58906 -6.92109 -5.77808 -3.11721 1.61258 2.28004 2.60488 2.72554 3.24771 3.39123 3.44432 3.45834 4.10631 4.29575 4.33214 4.49114 4.67477 4.69251 4.86433 4.92533 4.97869 5.10783 5.15182 5.24751 5.33327 5.36103 5.44315 5.53142 5.54772 5.56263 5.61752 5.68312 5.78363 5.81610 5.89469 5.98957 6.01831 6.13024 6.42970 6.47765 6.57831 6.76234 6.81314 7.21704 7.44312 7.48358 7.62101 7.69248 7.83450 8.16900 8.33962 9.13911 9.74388 10.37655 11.34032 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002552 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.625869 B =10970.938791 C =12142.444240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.107 0.893 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.538 6.538 21 C -0.133 4.133 22 C -0.043 4.043 23 C 0.090 3.910 24 C -0.273 4.273 25 C 0.045 3.955 26 N -0.302 5.302 27 N -0.371 5.371 28 C 0.096 3.904 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.254 0.746 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.182 0.818 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -1.529 21.315 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.366 5.366 19 C 0.299 3.701 20 O -0.415 6.415 21 C -0.174 4.174 22 C -0.082 4.082 23 C -0.038 4.038 24 C -0.303 4.303 25 C -0.140 4.140 26 N -0.124 5.124 27 N -0.154 5.154 28 C -0.045 4.045 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.165 0.835 43 H 0.199 0.801 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.456 -1.017 21.363 21.392 hybrid contribution -0.627 0.128 -1.068 1.245 sum -1.083 -0.889 20.294 20.343 Atomic orbital electron populations 1.22710 0.81740 1.02077 0.99723 1.87913 1.19072 1.27550 1.95030 1.23842 0.92976 0.84069 0.99461 0.91993 1.21570 0.88155 0.97296 0.89134 1.44256 1.21292 1.66442 1.00826 1.19063 1.05869 1.26887 0.84055 0.90136 1.24843 0.97295 1.00666 0.97375 1.69943 1.18425 1.48198 1.20101 0.86089 0.79294 0.78030 0.82295 1.21457 1.21747 1.20572 1.21819 0.97767 0.93756 0.86295 1.22421 0.96391 1.01106 0.77519 0.87469 1.45958 1.24961 1.58472 1.07194 1.20476 0.82828 0.78654 0.88158 1.90735 1.29906 1.41152 1.79695 1.21599 1.00583 1.03198 0.91988 1.19994 0.98725 1.03898 0.85596 1.21132 0.97316 0.90141 0.95207 1.21284 1.10836 1.05512 0.92630 1.23831 0.97865 0.93582 0.98751 1.77360 1.18790 1.20741 0.95484 1.48531 1.40116 1.21117 1.05650 1.21903 0.94184 0.88340 1.00106 0.93657 0.90222 0.94854 0.91803 0.93557 0.93605 0.96085 0.93186 0.77006 0.88290 0.89060 0.89756 0.88145 0.83470 0.80096 0.90556 0.89194 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.79 10.44 -35.23 -0.37 -7.16 16 3 C 0.06 1.02 3.09 -24.90 -0.08 0.94 16 4 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 5 C 0.16 3.91 5.16 -3.07 -0.02 3.90 16 6 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 7 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 10 N -0.92 -26.70 10.36 55.49 0.57 -26.13 16 11 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.71 6.93 -2.53 -0.02 2.70 16 16 C 0.13 2.36 3.15 -65.78 -0.21 2.16 16 17 H 0.11 2.25 7.54 -51.93 -0.39 1.85 16 18 N -0.72 -9.61 5.20 -51.73 -0.27 -9.88 16 19 C 0.51 6.81 7.83 -10.99 -0.09 6.72 16 20 O -0.54 -9.40 15.62 5.55 0.09 -9.31 16 21 C -0.13 -1.18 5.68 -27.89 -0.16 -1.33 16 22 C -0.04 -0.39 4.79 -27.88 -0.13 -0.53 16 23 C 0.09 0.87 6.18 -82.27 -0.51 0.37 16 24 C -0.27 -2.57 10.72 -40.01 -0.43 -2.99 16 25 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 26 N -0.30 -3.49 12.57 30.63 0.39 -3.10 16 27 N -0.37 -3.78 4.01 -63.88 -0.26 -4.04 16 28 C 0.10 0.67 11.27 59.85 0.67 1.34 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.06 1.75 7.22 -51.93 -0.37 1.37 16 33 H 0.05 1.20 7.61 -51.92 -0.40 0.80 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.40 4.09 8.57 -40.82 -0.35 3.75 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.08 0.80 6.90 -51.93 -0.36 0.44 16 41 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.51 6.97 -51.93 -0.36 0.15 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.01 382.00 -7.26 -42.27 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.25 Total: 2.17 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.32 Total: 8.26 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.14 Total: -58.94 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.28 Total: -16.47 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.01 -7.26 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212353623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.693 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds