Wall clock time and date at job start Fri Apr 10 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99777 * 2 1 4 4 H 1.09001 * 110.64214 * 26.85449 * 3 2 1 5 5 C 1.54322 * 110.86861 * 263.60458 * 3 2 1 6 6 N 1.47021 * 107.26948 * 219.37322 * 5 3 2 7 7 C 1.36941 * 125.64650 * 178.98972 * 6 5 3 8 8 H 1.08001 * 119.99591 * 174.78932 * 7 6 5 9 9 C 1.38812 * 120.00119 * 354.78985 * 7 6 5 10 10 N 1.31614 * 120.00107 * 7.04918 * 9 7 6 11 11 Si 1.86799 * 120.00011 * 187.05563 * 9 7 6 12 12 H 1.48499 * 109.47423 * 94.98305 * 11 9 7 13 13 H 1.48500 * 109.47198 * 214.98650 * 11 9 7 14 14 H 1.48499 * 109.47257 * 334.98377 * 11 9 7 15 15 C 1.47425 * 108.70699 * 358.94407 * 6 5 3 16 16 C 1.54908 * 104.82917 * 24.12602 * 15 6 5 17 17 H 1.09000 * 111.03495 * 81.08183 * 16 15 6 18 18 N 1.46496 * 111.00594 * 204.91880 * 16 15 6 19 19 C 1.34776 * 120.00179 * 267.19845 * 18 16 15 20 20 O 1.21289 * 119.99693 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00687 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47686 * 180.02562 * 21 19 18 23 23 C 1.50703 * 109.47274 * 179.97438 * 22 21 19 24 24 C 1.35316 * 126.12205 * 85.02147 * 23 22 21 25 25 C 1.39879 * 107.91663 * 179.97438 * 24 23 22 26 26 N 1.30837 * 108.19914 * 359.74233 * 25 24 23 27 27 N 1.34941 * 126.13089 * 264.99963 * 23 22 21 28 28 C 1.46500 * 126.03524 * 359.97438 * 27 23 22 29 29 H 1.09001 * 109.47179 * 60.00558 * 1 2 3 30 30 H 1.09008 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47766 * 300.00278 * 1 2 3 32 32 H 1.09000 * 109.88601 * 338.79297 * 5 3 2 33 33 H 1.09007 * 109.88340 * 99.96120 * 5 3 2 34 34 H 0.96991 * 120.00330 * 180.02562 * 10 9 7 35 35 H 1.08998 * 110.36508 * 265.29336 * 15 6 5 36 36 H 1.08999 * 110.36754 * 142.96605 * 15 6 5 37 37 H 0.96998 * 120.00120 * 87.19453 * 18 16 15 38 38 H 1.08996 * 109.47010 * 59.99675 * 21 19 18 39 39 H 1.09011 * 109.47159 * 300.00329 * 21 19 18 40 40 H 1.08996 * 109.47254 * 59.99711 * 22 21 19 41 41 H 1.09001 * 109.46778 * 299.99820 * 22 21 19 42 42 H 1.08002 * 126.04540 * 359.97438 * 24 23 22 43 43 H 1.07996 * 125.89791 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.46995 * 90.00012 * 28 27 23 45 45 H 1.09007 * 109.47197 * 330.00659 * 28 27 23 46 46 H 1.09002 * 109.47552 * 210.00226 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0266 0.4608 5 6 2.3805 1.7423 -1.4330 6 7 3.6669 2.4499 -1.3549 7 6 4.3516 2.9804 -2.4155 8 1 5.2494 3.5561 -2.2452 9 6 3.8918 2.7783 -3.7096 10 7 2.7278 2.1981 -3.9113 11 14 4.9252 3.3297 -5.1648 12 1 5.7395 2.1885 -5.6544 13 1 4.0337 3.8047 -6.2533 14 1 5.8239 4.4342 -4.7435 15 6 4.0971 2.4947 0.0545 16 6 3.3816 1.2958 0.7257 17 1 3.9169 0.3652 0.5371 18 7 3.2163 1.5210 2.1637 19 6 4.1463 1.0689 3.0280 20 8 5.1200 0.4750 2.6152 21 6 3.9767 1.3010 4.5073 22 6 5.1628 0.6930 5.2584 23 6 4.9933 0.9258 6.7377 24 6 4.2838 0.1514 7.5909 25 6 4.3827 0.7152 8.8672 26 7 5.1295 1.7862 8.7841 27 7 5.5223 1.9433 7.4488 28 6 6.3645 3.0186 6.9190 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8898 32 1 2.4776 0.8663 -2.0743 33 1 1.6138 2.4096 -1.8270 34 1 2.4066 2.0566 -4.8155 35 1 3.7840 3.4306 0.5171 36 1 5.1786 2.3788 0.1249 37 1 2.4374 1.9957 2.4939 38 1 3.0529 0.8314 4.8451 39 1 3.9328 2.3723 4.7043 40 1 6.0864 1.1630 4.9205 41 1 5.2070 -0.3782 5.0615 42 1 3.7376 -0.7437 7.3322 43 1 3.9256 0.3301 9.7667 44 1 5.7353 3.8504 6.6023 45 1 6.9332 2.6480 6.0660 46 1 7.0517 3.3575 7.6943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212353623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:03 Heat of formation + Delta-G solvation = -0.227099 kcal Electronic energy + Delta-G solvation = -27108.629532 eV Core-core repulsion = 23228.110753 eV Total energy + Delta-G solvation = -3880.518779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.17142 -41.03767 -39.63132 -37.50628 -35.61384 -35.06389 -33.89145 -33.61212 -30.86791 -30.14728 -28.78356 -27.56211 -27.51039 -26.35129 -25.18670 -22.34625 -22.07370 -22.00941 -21.32482 -20.50835 -19.13915 -18.38017 -17.78248 -17.41172 -17.11071 -16.60465 -16.53515 -16.26251 -15.82593 -15.75306 -15.30214 -15.12246 -15.06915 -14.73873 -14.49659 -14.21490 -13.91144 -13.68805 -13.61641 -13.32437 -13.19435 -13.14081 -13.00512 -12.92574 -12.78314 -12.55987 -12.29799 -12.09474 -12.06267 -11.88200 -11.62079 -11.53922 -10.99437 -10.76248 -10.57423 -10.20516 -10.04682 -9.43257 -8.96573 -7.89545 -5.26049 0.90690 1.44912 1.48054 1.56100 1.65996 1.67402 1.90705 2.14035 2.46349 2.79006 3.30274 3.49619 3.54955 3.75216 3.84563 3.90845 3.94665 4.01717 4.07554 4.23065 4.38301 4.39660 4.42545 4.47262 4.57919 4.61589 4.66079 4.66728 4.69533 4.84096 4.86542 4.88971 4.93542 5.02733 5.09568 5.31761 5.32704 5.39516 5.50571 5.65733 5.78940 6.12060 6.13387 6.33035 6.58504 6.79215 7.04003 7.30204 7.69714 8.32330 9.20544 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002552 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.625869 B =10970.938791 C =12142.444240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.076 3.924 4 H 0.097 0.903 5 C 0.173 3.827 6 N -0.623 5.623 7 C -0.246 4.246 8 H 0.084 0.916 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.978 3.022 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.131 3.869 16 C 0.150 3.850 17 H 0.075 0.925 18 N -0.702 5.702 19 C 0.514 3.486 20 O -0.583 6.583 21 C -0.117 4.117 22 C -0.037 4.037 23 C 0.085 3.915 24 C -0.281 4.281 25 C 0.041 3.959 26 N -0.337 5.337 27 N -0.379 5.379 28 C 0.088 3.912 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.249 0.751 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.417 0.583 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.164 0.836 43 H 0.207 0.793 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -0.941 23.385 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.017 3.983 4 H 0.115 0.885 5 C 0.047 3.953 6 N -0.351 5.351 7 C -0.375 4.375 8 H 0.102 0.898 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.806 3.194 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.190 1.190 15 C 0.005 3.995 16 C 0.043 3.957 17 H 0.093 0.907 18 N -0.354 5.354 19 C 0.302 3.698 20 O -0.463 6.463 21 C -0.157 4.157 22 C -0.076 4.076 23 C -0.043 4.043 24 C -0.310 4.310 25 C -0.144 4.144 26 N -0.159 5.159 27 N -0.162 5.162 28 C -0.053 4.053 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.181 0.819 43 H 0.224 0.776 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.226 -0.404 23.493 23.528 hybrid contribution -0.390 -0.091 -1.670 1.717 sum -1.616 -0.495 21.823 21.888 Atomic orbital electron populations 1.22990 0.79340 1.03875 1.00760 1.87896 1.21744 1.27074 1.94914 1.23499 0.93838 0.85228 0.95762 0.88501 1.21300 0.87108 0.94693 0.92222 1.44530 1.21942 1.66271 1.02315 1.19441 1.06076 1.26761 0.85212 0.89802 1.25685 0.98458 1.01395 0.99990 1.70159 1.19831 1.49503 1.20086 0.85066 0.77756 0.77764 0.78793 1.21676 1.21810 1.19012 1.21946 0.97326 0.95800 0.84462 1.21803 0.95357 0.98332 0.80238 0.90727 1.45720 1.26034 1.58734 1.04950 1.21259 0.81609 0.77174 0.89762 1.90731 1.31783 1.43060 1.80708 1.21556 1.01393 1.04859 0.87908 1.19902 0.98790 1.03480 0.85452 1.21209 0.97490 0.90328 0.95257 1.21587 1.10883 1.05989 0.92526 1.24332 0.97181 0.92963 0.99894 1.77317 1.20073 1.22047 0.96501 1.48787 1.40348 1.21730 1.05359 1.22129 0.94392 0.88199 1.00545 0.94766 0.88209 0.91548 0.96468 0.96266 0.94201 0.93847 0.94529 0.74579 0.85807 0.86758 0.90257 0.88832 0.81877 0.77618 0.89331 0.88237 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.85 113.37 1.23 1.89 16 2 O -0.40 -13.91 10.44 -148.98 -1.56 -15.47 16 3 C 0.08 2.72 3.09 31.78 0.10 2.82 16 4 H 0.10 2.80 7.68 -2.39 -0.02 2.78 16 5 C 0.17 8.51 5.16 86.73 0.45 8.95 16 6 N -0.62 -32.24 3.39 -691.98 -2.35 -34.59 16 7 C -0.25 -13.92 10.27 84.03 0.86 -13.05 16 8 H 0.08 4.54 7.84 -2.91 -0.02 4.52 16 9 C -0.06 -3.54 5.48 84.86 0.46 -3.07 16 10 N -0.95 -57.00 10.36 21.65 0.22 -56.78 16 11 Si 0.98 45.93 29.56 68.60 2.03 47.96 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.13 5.40 6.93 86.85 0.60 6.00 16 16 C 0.15 5.30 3.15 46.38 0.15 5.45 16 17 H 0.07 3.18 7.54 -2.39 -0.02 3.17 16 18 N -0.70 -17.05 5.20 -435.97 -2.27 -19.31 16 19 C 0.51 12.51 7.83 87.66 0.69 13.20 16 20 O -0.58 -20.03 15.62 -3.06 -0.05 -20.08 16 21 C -0.12 -1.67 5.68 29.85 0.17 -1.50 16 22 C -0.04 -0.60 4.79 29.85 0.14 -0.46 16 23 C 0.09 1.48 6.18 41.41 0.26 1.73 16 24 C -0.28 -4.61 10.72 21.99 0.24 -4.37 16 25 C 0.04 0.70 12.03 85.24 1.03 1.73 16 26 N -0.34 -7.29 12.57 -57.02 -0.72 -8.01 16 27 N -0.38 -7.06 4.01 -356.02 -1.43 -8.49 16 28 C 0.09 1.07 11.27 127.77 1.44 2.51 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.02 0.99 7.22 -2.39 -0.02 0.97 16 33 H 0.02 1.03 7.61 -2.38 -0.02 1.01 16 34 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 6.87 8.57 -92.71 -0.79 6.08 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.08 1.38 6.90 -2.39 -0.02 1.37 16 41 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 42 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 0.99 6.97 -2.38 -0.02 0.97 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.61 382.00 1.88 -77.73 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.19 Total: 15.22 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 7.81 Total: 21.82 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.54 Total: -127.17 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.60 Total: -35.54 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -79.61 1.88 -77.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212353623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.499 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds