Wall clock time and date at job start Fri Apr 10 2020 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99924 * 2 1 4 4 C 1.52995 * 109.47160 * 82.56885 * 3 2 1 5 5 H 1.08997 * 112.74249 * 285.49695 * 4 3 2 6 6 C 1.53498 * 113.52007 * 154.70150 * 4 3 2 7 7 C 1.53758 * 83.25826 * 218.97430 * 6 4 3 8 8 N 1.47062 * 87.88547 * 26.24060 * 7 6 4 9 9 C 1.36940 * 136.05339 * 152.96661 * 8 7 6 10 10 H 1.08000 * 119.99713 * 157.25004 * 9 8 7 11 11 C 1.38808 * 120.00081 * 336.97076 * 9 8 7 12 12 N 1.31615 * 120.00253 * 167.01244 * 11 9 8 13 13 Si 1.86797 * 120.00100 * 347.00810 * 11 9 8 14 14 H 1.48501 * 109.47007 * 84.89265 * 13 11 9 15 15 H 1.48496 * 109.47529 * 204.89655 * 13 11 9 16 16 H 1.48508 * 109.47038 * 324.89668 * 13 11 9 17 17 C 1.34778 * 119.99330 * 180.02562 * 2 1 3 18 18 O 1.21285 * 119.99326 * 184.25425 * 17 2 1 19 19 C 1.50697 * 120.00230 * 4.25496 * 17 2 1 20 20 O 1.42903 * 109.46725 * 179.97438 * 19 17 2 21 21 C 1.42904 * 113.99823 * 179.97438 * 20 19 17 22 22 C 1.50694 * 109.47310 * 180.02562 * 21 20 19 23 23 N 1.30501 * 125.64712 * 269.69316 * 22 21 20 24 24 C 1.34128 * 109.25434 * 179.88982 * 23 22 21 25 25 C 1.34668 * 108.02187 * 0.37046 * 24 23 22 26 26 N 1.35040 * 125.65500 * 89.99813 * 22 21 20 27 27 C 1.46508 * 126.39508 * 359.94365 * 26 22 21 28 28 H 1.08999 * 109.47130 * 89.99649 * 1 2 3 29 29 H 1.09000 * 109.47282 * 210.00151 * 1 2 3 30 30 H 1.09004 * 109.46548 * 330.00110 * 1 2 3 31 31 H 1.08994 * 109.47232 * 322.56421 * 3 2 1 32 32 H 1.09004 * 109.46395 * 202.56878 * 3 2 1 33 33 H 1.09004 * 114.20854 * 332.73200 * 6 4 3 34 34 H 1.09006 * 114.20708 * 105.35639 * 6 4 3 35 35 H 1.08992 * 113.46643 * 271.50164 * 7 6 4 36 36 H 1.09001 * 113.54575 * 140.98836 * 7 6 4 37 37 H 0.97003 * 120.00294 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47289 * 299.99858 * 19 17 2 39 39 H 1.09000 * 109.47031 * 60.00215 * 19 17 2 40 40 H 1.09001 * 109.46799 * 300.00406 * 21 20 19 41 41 H 1.09001 * 109.47287 * 59.99667 * 21 20 19 42 42 H 1.08008 * 125.99157 * 180.11136 * 24 23 22 43 43 H 1.07996 * 126.59238 * 179.80812 * 25 24 23 44 44 H 1.09000 * 109.47200 * 89.99885 * 27 26 22 45 45 H 1.08997 * 109.46842 * 209.99856 * 27 26 22 46 46 H 1.08997 * 109.46808 * 329.99918 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.2910 1.8037 1.4303 5 1 1.3482 2.2178 1.7878 6 6 3.4922 2.7312 1.6602 7 6 3.5626 2.0059 3.0141 8 7 2.9086 0.8565 2.3707 9 6 2.8816 -0.4987 2.5654 10 1 2.0523 -1.0814 2.1926 11 6 3.9230 -1.1242 3.2370 12 7 3.7878 -2.3666 3.6498 13 14 5.5165 -0.2028 3.5548 14 1 5.3844 0.6008 4.7966 15 1 6.6281 -1.1750 3.7102 16 1 5.8038 0.6987 2.4101 17 6 2.1388 -1.1673 -0.0005 18 8 3.3492 -1.1688 0.0774 19 6 1.3884 -2.4705 -0.0979 20 8 2.3164 -3.5570 -0.0796 21 6 1.7045 -4.8455 -0.1670 22 6 2.7702 -5.9106 -0.1385 23 7 3.3718 -6.4126 -1.1821 24 6 4.2607 -7.3331 -0.7800 25 6 4.2020 -7.4100 0.5633 26 7 3.2567 -6.5078 0.9706 27 6 2.8491 -6.2398 2.3521 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6726 1.9914 -0.6246 32 1 3.2011 1.1088 -0.3944 33 1 4.3388 2.5378 1.0013 34 1 3.2339 3.7879 1.7309 35 1 2.9550 2.4733 3.7890 36 1 4.5803 1.7975 3.3441 37 1 4.5157 -2.8039 4.1187 38 1 0.7059 -2.5608 0.7472 39 1 0.8203 -2.4939 -1.0279 40 1 1.0292 -4.9849 0.6771 41 1 1.1423 -4.9183 -1.0980 42 1 4.9069 -7.9141 -1.4213 43 1 4.7885 -8.0584 1.1972 44 1 2.0238 -6.8987 2.6218 45 1 3.6910 -6.4197 3.0206 46 1 2.5294 -5.2016 2.4416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235663046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:34 Heat of formation + Delta-G solvation = 80.981006 kcal Electronic energy + Delta-G solvation = -28926.087746 eV Core-core repulsion = 25049.090414 eV Total energy + Delta-G solvation = -3876.997332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80711 -39.52984 -38.11533 -36.91120 -34.62989 -33.70497 -32.09802 -30.79233 -29.34479 -28.23789 -27.28988 -26.70364 -25.83772 -25.15742 -23.18853 -22.47752 -21.15637 -19.78025 -19.15384 -18.66220 -17.13617 -17.07893 -16.59799 -16.12335 -15.85770 -15.52914 -15.20133 -14.94404 -14.78315 -14.20969 -13.94047 -13.59187 -13.32027 -13.11395 -12.90877 -12.60967 -12.50603 -12.45070 -12.34987 -12.24902 -12.04747 -11.69848 -11.61404 -11.30669 -11.17863 -10.94020 -10.66422 -10.42876 -10.12003 -9.76863 -9.65924 -9.38879 -9.33723 -9.24898 -8.79344 -8.44774 -8.22016 -7.84424 -6.86572 -5.75698 -3.05591 2.14557 3.02226 3.17510 3.45890 3.47630 3.60099 3.63734 3.67139 4.30687 4.73292 4.76756 4.89469 4.97589 5.11857 5.21882 5.27391 5.30552 5.38275 5.39325 5.42177 5.48178 5.49997 5.58997 5.64498 5.69353 5.79907 5.86067 5.89711 5.93256 5.96306 5.99883 6.17059 6.24102 6.40141 6.45580 6.54109 6.58674 6.96904 7.06412 7.11953 7.32488 7.42362 7.44997 8.09760 8.32146 8.50079 8.81381 9.16449 9.85666 10.54037 11.42396 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.004701 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.339021 B = 5955.244596 C = 7240.827738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.617 5.617 3 C 0.123 3.877 4 C 0.126 3.874 5 H 0.049 0.951 6 C -0.153 4.153 7 C 0.099 3.901 8 N -0.610 5.610 9 C -0.193 4.193 10 H 0.086 0.914 11 C 0.032 3.968 12 N -0.918 5.918 13 Si 0.894 3.106 14 H -0.296 1.296 15 H -0.307 1.307 16 H -0.274 1.274 17 C 0.521 3.479 18 O -0.467 6.467 19 C 0.055 3.945 20 O -0.342 6.342 21 C 0.150 3.850 22 C 0.211 3.789 23 N -0.480 5.480 24 C -0.035 4.035 25 C -0.054 4.054 26 N -0.440 5.440 27 C 0.068 3.932 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.168 0.832 43 H 0.173 0.827 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -2.148 -5.904 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.354 5.354 3 C 0.000 4.000 4 C 0.018 3.982 5 H 0.067 0.933 6 C -0.192 4.192 7 C -0.026 4.026 8 N -0.337 5.337 9 C -0.319 4.319 10 H 0.104 0.896 11 C -0.166 4.166 12 N -0.563 5.563 13 Si 0.727 3.273 14 H -0.224 1.224 15 H -0.236 1.236 16 H -0.200 1.200 17 C 0.307 3.693 18 O -0.336 6.336 19 C -0.025 4.025 20 O -0.259 6.259 21 C 0.071 3.929 22 C -0.051 4.051 23 N -0.200 5.200 24 C -0.184 4.184 25 C -0.188 4.188 26 N -0.122 5.122 27 C -0.075 4.075 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.186 0.814 43 H 0.190 0.810 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.055 -2.296 -6.379 10.528 hybrid contribution 0.804 0.131 1.443 1.657 sum -7.250 -2.165 -4.936 9.034 Atomic orbital electron populations 1.21627 0.80931 1.02864 1.00388 1.47398 1.05721 1.05731 1.76590 1.21677 0.97616 0.83810 0.96936 1.22546 0.94962 0.89954 0.90731 0.93343 1.23605 0.99346 0.97031 0.99210 1.22674 0.97127 0.88702 0.94145 1.45729 1.56271 1.00735 1.30985 1.18207 1.03132 0.77903 1.32696 0.89631 1.24728 0.97029 0.95049 0.99762 1.69673 1.32340 1.12225 1.42057 0.86710 0.85213 0.78106 0.77264 1.22385 1.23575 1.20012 1.19535 0.88290 0.83895 0.77601 1.90780 1.13616 1.85798 1.43434 1.22200 0.92132 0.87260 1.00909 1.88203 1.31147 1.11655 1.94855 1.20424 0.90098 0.80895 1.01473 1.22579 1.01574 0.99377 0.81552 1.70166 1.09554 1.11245 1.29016 1.22235 1.02006 1.01492 0.92665 1.22713 0.98489 1.00354 0.97273 1.45283 1.29301 1.29274 1.08333 1.22199 1.01636 1.04894 0.78724 0.93559 0.91812 0.91509 0.92018 0.89801 0.89982 0.92070 0.94398 0.94170 0.93461 0.90838 0.91573 0.91831 0.90516 0.81438 0.80975 0.91008 0.89439 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.23 59.85 0.61 1.68 16 2 N -0.62 -10.83 2.44 -181.57 -0.44 -11.28 16 3 C 0.12 2.14 5.58 -4.04 -0.02 2.12 16 4 C 0.13 2.37 4.36 -72.39 -0.32 2.06 16 5 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 6 C -0.15 -2.72 8.03 -26.08 -0.21 -2.93 16 7 C 0.10 2.15 7.30 -8.37 -0.06 2.09 16 8 N -0.61 -14.81 3.30 -176.84 -0.58 -15.40 16 9 C -0.19 -5.41 7.53 -15.06 -0.11 -5.53 16 10 H 0.09 2.48 5.83 -52.49 -0.31 2.18 16 11 C 0.03 0.95 5.50 -17.43 -0.10 0.86 16 12 N -0.92 -28.07 13.97 55.49 0.78 -27.29 16 13 Si 0.89 24.77 24.80 -169.99 -4.22 20.55 16 14 H -0.30 -7.94 7.06 56.52 0.40 -7.54 16 15 H -0.31 -8.74 7.11 56.52 0.40 -8.34 16 16 H -0.27 -7.60 6.74 56.52 0.38 -7.22 16 17 C 0.52 11.06 4.70 -10.99 -0.05 11.01 16 18 O -0.47 -12.55 14.06 -14.36 -0.20 -12.75 16 19 C 0.06 0.97 5.02 36.00 0.18 1.15 16 20 O -0.34 -7.10 9.86 -55.14 -0.54 -7.64 16 21 C 0.15 2.43 6.03 36.00 0.22 2.65 16 22 C 0.21 3.83 7.53 -155.42 -1.17 2.66 16 23 N -0.48 -9.04 11.25 -10.82 -0.12 -9.16 16 24 C -0.03 -0.55 11.87 -17.81 -0.21 -0.76 16 25 C -0.05 -0.79 11.58 -16.56 -0.19 -0.99 16 26 N -0.44 -7.25 3.15 -121.28 -0.38 -7.63 16 27 C 0.07 0.97 10.79 59.85 0.65 1.61 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.75 6.47 -51.93 -0.34 0.42 16 30 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.08 1.68 7.03 -51.93 -0.37 1.32 16 33 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.96 3.70 -51.93 -0.19 0.77 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 1.19 7.27 -51.93 -0.38 0.81 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.17 2.10 8.06 -52.48 -0.42 1.68 16 43 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.11 1.87 7.66 -51.93 -0.40 1.47 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -39.31 369.16 -7.96 -47.27 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.02 Total: 0.11 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: -0.79 Total: 17.66 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -0.76 Total: -70.76 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.75 Total: -20.40 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.22 Total: 20.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.31 -7.96 -47.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235663046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.248 kcal (2) G-P(sol) polarization free energy of solvation -39.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds