Wall clock time and date at job start Fri Apr 10 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99924 * 2 1 4 4 C 1.52995 * 109.47160 * 82.56885 * 3 2 1 5 5 H 1.08997 * 112.74249 * 285.49695 * 4 3 2 6 6 C 1.53498 * 113.52007 * 154.70150 * 4 3 2 7 7 C 1.53758 * 83.25826 * 218.97430 * 6 4 3 8 8 N 1.47062 * 87.88547 * 26.24060 * 7 6 4 9 9 C 1.36940 * 136.05339 * 152.96661 * 8 7 6 10 10 H 1.08000 * 119.99713 * 157.25004 * 9 8 7 11 11 C 1.38808 * 120.00081 * 336.97076 * 9 8 7 12 12 N 1.31615 * 120.00253 * 167.01244 * 11 9 8 13 13 Si 1.86797 * 120.00100 * 347.00810 * 11 9 8 14 14 H 1.48501 * 109.47007 * 84.89265 * 13 11 9 15 15 H 1.48496 * 109.47529 * 204.89655 * 13 11 9 16 16 H 1.48508 * 109.47038 * 324.89668 * 13 11 9 17 17 C 1.34778 * 119.99330 * 180.02562 * 2 1 3 18 18 O 1.21285 * 119.99326 * 184.25425 * 17 2 1 19 19 C 1.50697 * 120.00230 * 4.25496 * 17 2 1 20 20 O 1.42903 * 109.46725 * 179.97438 * 19 17 2 21 21 C 1.42904 * 113.99823 * 179.97438 * 20 19 17 22 22 C 1.50694 * 109.47310 * 180.02562 * 21 20 19 23 23 N 1.30501 * 125.64712 * 269.69316 * 22 21 20 24 24 C 1.34128 * 109.25434 * 179.88982 * 23 22 21 25 25 C 1.34668 * 108.02187 * 0.37046 * 24 23 22 26 26 N 1.35040 * 125.65500 * 89.99813 * 22 21 20 27 27 C 1.46508 * 126.39508 * 359.94365 * 26 22 21 28 28 H 1.08999 * 109.47130 * 89.99649 * 1 2 3 29 29 H 1.09000 * 109.47282 * 210.00151 * 1 2 3 30 30 H 1.09004 * 109.46548 * 330.00110 * 1 2 3 31 31 H 1.08994 * 109.47232 * 322.56421 * 3 2 1 32 32 H 1.09004 * 109.46395 * 202.56878 * 3 2 1 33 33 H 1.09004 * 114.20854 * 332.73200 * 6 4 3 34 34 H 1.09006 * 114.20708 * 105.35639 * 6 4 3 35 35 H 1.08992 * 113.46643 * 271.50164 * 7 6 4 36 36 H 1.09001 * 113.54575 * 140.98836 * 7 6 4 37 37 H 0.97003 * 120.00294 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47289 * 299.99858 * 19 17 2 39 39 H 1.09000 * 109.47031 * 60.00215 * 19 17 2 40 40 H 1.09001 * 109.46799 * 300.00406 * 21 20 19 41 41 H 1.09001 * 109.47287 * 59.99667 * 21 20 19 42 42 H 1.08008 * 125.99157 * 180.11136 * 24 23 22 43 43 H 1.07996 * 126.59238 * 179.80812 * 25 24 23 44 44 H 1.09000 * 109.47200 * 89.99885 * 27 26 22 45 45 H 1.08997 * 109.46842 * 209.99856 * 27 26 22 46 46 H 1.08997 * 109.46808 * 329.99918 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.2910 1.8037 1.4303 5 1 1.3482 2.2178 1.7878 6 6 3.4922 2.7312 1.6602 7 6 3.5626 2.0059 3.0141 8 7 2.9086 0.8565 2.3707 9 6 2.8816 -0.4987 2.5654 10 1 2.0523 -1.0814 2.1926 11 6 3.9230 -1.1242 3.2370 12 7 3.7878 -2.3666 3.6498 13 14 5.5165 -0.2028 3.5548 14 1 5.3844 0.6008 4.7966 15 1 6.6281 -1.1750 3.7102 16 1 5.8038 0.6987 2.4101 17 6 2.1388 -1.1673 -0.0005 18 8 3.3492 -1.1688 0.0774 19 6 1.3884 -2.4705 -0.0979 20 8 2.3164 -3.5570 -0.0796 21 6 1.7045 -4.8455 -0.1670 22 6 2.7702 -5.9106 -0.1385 23 7 3.3718 -6.4126 -1.1821 24 6 4.2607 -7.3331 -0.7800 25 6 4.2020 -7.4100 0.5633 26 7 3.2567 -6.5078 0.9706 27 6 2.8491 -6.2398 2.3521 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6726 1.9914 -0.6246 32 1 3.2011 1.1088 -0.3944 33 1 4.3388 2.5378 1.0013 34 1 3.2339 3.7879 1.7309 35 1 2.9550 2.4733 3.7890 36 1 4.5803 1.7975 3.3441 37 1 4.5157 -2.8039 4.1187 38 1 0.7059 -2.5608 0.7472 39 1 0.8203 -2.4939 -1.0279 40 1 1.0292 -4.9849 0.6771 41 1 1.1423 -4.9183 -1.0980 42 1 4.9069 -7.9141 -1.4213 43 1 4.7885 -8.0584 1.1972 44 1 2.0238 -6.8987 2.6218 45 1 3.6910 -6.4197 3.0206 46 1 2.5294 -5.2016 2.4416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235663046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:33 Heat of formation + Delta-G solvation = 52.224439 kcal Electronic energy + Delta-G solvation = -28927.334724 eV Core-core repulsion = 25049.090414 eV Total energy + Delta-G solvation = -3878.244310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.03184 -41.06796 -39.69695 -38.36190 -36.14077 -34.93626 -34.21874 -32.06367 -30.86767 -30.03447 -28.57614 -27.91449 -27.07473 -26.47161 -25.10823 -24.00818 -22.35631 -21.07247 -20.81672 -20.12452 -19.03962 -18.40814 -17.92574 -17.51725 -17.30588 -17.19365 -16.71105 -16.44471 -16.12722 -15.54182 -15.38365 -15.10339 -14.97358 -14.68747 -14.37265 -14.18582 -13.86102 -13.75765 -13.70878 -13.48498 -13.30756 -13.18865 -12.95594 -12.83106 -12.81795 -12.65821 -12.58227 -12.16894 -11.81826 -11.59000 -11.22787 -11.05932 -10.72057 -10.59852 -10.57829 -10.38101 -9.43775 -9.29516 -8.80870 -7.98626 -5.20006 0.90775 1.20966 1.33210 1.40640 1.81936 1.93861 2.03448 2.25874 2.52375 3.03084 3.19972 3.39528 3.57780 3.77161 3.79243 3.90089 3.97378 4.12709 4.21384 4.23854 4.27725 4.35632 4.36800 4.42627 4.45851 4.51547 4.54827 4.65536 4.68973 4.75231 4.77080 4.78469 4.89403 5.00116 5.01711 5.10428 5.33640 5.44244 5.67882 5.80845 5.85751 6.06590 6.18785 6.31952 6.68962 6.71254 7.07361 7.65208 7.67325 8.51042 9.22849 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.004701 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.339021 B = 5955.244596 C = 7240.827738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.121 3.879 4 C 0.128 3.872 5 H 0.082 0.918 6 C -0.131 4.131 7 C 0.085 3.915 8 N -0.645 5.645 9 C -0.148 4.148 10 H 0.073 0.927 11 C -0.034 4.034 12 N -0.952 5.952 13 Si 0.934 3.066 14 H -0.286 1.286 15 H -0.328 1.328 16 H -0.283 1.283 17 C 0.509 3.491 18 O -0.543 6.543 19 C 0.058 3.942 20 O -0.390 6.390 21 C 0.150 3.850 22 C 0.180 3.820 23 N -0.512 5.512 24 C -0.056 4.056 25 C -0.048 4.048 26 N -0.448 5.448 27 C 0.072 3.928 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.013 0.987 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.194 0.806 43 H 0.210 0.790 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 -0.493 -6.589 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.351 5.351 3 C -0.003 4.003 4 C 0.022 3.978 5 H 0.100 0.900 6 C -0.169 4.169 7 C -0.040 4.040 8 N -0.373 5.373 9 C -0.276 4.276 10 H 0.090 0.910 11 C -0.227 4.227 12 N -0.601 5.601 13 Si 0.769 3.231 14 H -0.214 1.214 15 H -0.258 1.258 16 H -0.209 1.209 17 C 0.296 3.704 18 O -0.418 6.418 19 C -0.021 4.021 20 O -0.308 6.308 21 C 0.072 3.928 22 C -0.082 4.082 23 N -0.233 5.233 24 C -0.204 4.204 25 C -0.183 4.183 26 N -0.130 5.130 27 C -0.070 4.070 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.211 0.789 43 H 0.227 0.773 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.674 -0.550 -7.077 12.819 hybrid contribution 1.486 -0.277 1.566 2.176 sum -9.188 -0.826 -5.512 10.746 Atomic orbital electron populations 1.21975 0.77399 1.04012 1.03030 1.47571 1.07954 1.04777 1.74769 1.21724 0.96928 0.84846 0.96793 1.22829 0.96243 0.88334 0.90431 0.90026 1.23444 0.98256 0.99487 0.95717 1.22934 0.95730 0.88507 0.96832 1.46039 1.57096 1.00375 1.33759 1.18161 1.01320 0.79835 1.28309 0.90996 1.25219 0.99165 0.95887 1.02386 1.69764 1.32323 1.13234 1.44827 0.86037 0.83305 0.76640 0.77102 1.21397 1.25775 1.20930 1.20334 0.87864 0.85916 0.76241 1.90747 1.16654 1.87048 1.47317 1.22309 0.91388 0.85008 1.03430 1.88139 1.33684 1.13664 1.95292 1.20643 0.89884 0.78894 1.03383 1.22986 1.02736 1.00376 0.82071 1.70118 1.10710 1.12418 1.30085 1.22812 1.02189 1.01563 0.93854 1.23378 0.97582 0.99773 0.97554 1.45531 1.29454 1.29321 1.08661 1.22210 1.03146 1.03556 0.78038 0.90056 0.91405 0.89727 0.86763 0.93411 0.91548 0.86928 0.92043 0.96870 0.94451 0.89709 0.87257 0.89893 0.88300 0.78868 0.77282 0.87390 0.88785 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.23 127.77 1.31 2.90 16 2 N -0.62 -20.19 2.44 -846.75 -2.07 -22.26 16 3 C 0.12 3.85 5.58 86.38 0.48 4.33 16 4 C 0.13 4.37 4.36 41.79 0.18 4.55 16 5 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 6 C -0.13 -4.20 8.03 31.02 0.25 -3.95 16 7 C 0.08 3.52 7.30 83.27 0.61 4.13 16 8 N -0.64 -30.61 3.30 -713.39 -2.36 -32.96 16 9 C -0.15 -8.40 7.53 84.03 0.63 -7.77 16 10 H 0.07 4.24 5.83 -2.91 -0.02 4.22 16 11 C -0.03 -2.10 5.50 84.86 0.47 -1.63 16 12 N -0.95 -60.91 13.97 21.65 0.30 -60.60 16 13 Si 0.93 53.16 24.80 68.60 1.70 54.86 16 14 H -0.29 -15.43 7.06 99.48 0.70 -14.73 16 15 H -0.33 -19.41 7.11 99.48 0.71 -18.71 16 16 H -0.28 -16.11 6.74 99.48 0.67 -15.44 16 17 C 0.51 21.58 4.70 87.66 0.41 21.99 16 18 O -0.54 -30.34 14.06 15.99 0.22 -30.12 16 19 C 0.06 2.00 5.02 71.23 0.36 2.36 16 20 O -0.39 -16.64 9.86 -129.94 -1.28 -17.92 16 21 C 0.15 4.89 6.03 71.23 0.43 5.32 16 22 C 0.18 6.64 7.53 138.13 1.04 7.68 16 23 N -0.51 -19.61 11.25 -188.13 -2.12 -21.72 16 24 C -0.06 -1.76 11.87 83.52 0.99 -0.77 16 25 C -0.05 -1.40 11.58 83.09 0.96 -0.44 16 26 N -0.45 -14.82 3.15 -537.62 -1.69 -16.52 16 27 C 0.07 2.08 10.79 127.77 1.38 3.46 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.36 6.47 -2.39 -0.02 1.35 16 30 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 31 H 0.11 2.46 8.12 -2.39 -0.02 2.44 16 32 H 0.05 1.89 7.03 -2.39 -0.02 1.87 16 33 H 0.07 2.36 7.96 -2.38 -0.02 2.35 16 34 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.01 0.63 3.70 -2.39 -0.01 0.62 16 37 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.09 2.67 7.27 -2.39 -0.02 2.65 16 39 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.08 2.28 7.70 -2.39 -0.02 2.26 16 41 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.07 2.65 7.66 -2.39 -0.02 2.63 16 Total: -1.00 -93.29 369.16 3.14 -90.15 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.94 Total: 14.92 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 9.50 Total: 42.17 kcal Atomic # 7 Polarization: -146.13 SS G_CDS: -7.93 Total: -154.06 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.06 Total: -48.04 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 1.70 Total: 54.86 kcal Total: -93.29 3.14 -90.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235663046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.373 kcal (2) G-P(sol) polarization free energy of solvation -93.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds