Wall clock time and date at job start Fri Apr 10 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00200 * 2 1 4 4 C 1.52996 * 109.47210 * 274.72605 * 3 2 1 5 5 H 1.08996 * 112.74062 * 316.18630 * 4 3 2 6 6 C 1.53500 * 113.46755 * 86.92437 * 4 3 2 7 7 C 1.53618 * 83.30403 * 140.83193 * 6 4 3 8 8 N 1.47062 * 88.00623 * 333.97838 * 7 6 4 9 9 C 1.36929 * 136.06145 * 207.10738 * 8 7 6 10 10 H 1.08000 * 120.00417 * 174.73728 * 9 8 7 11 11 C 1.38816 * 119.99971 * 354.73916 * 9 8 7 12 12 N 1.31621 * 119.99812 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00207 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46857 * 89.99504 * 13 11 9 15 15 H 1.48492 * 109.47446 * 209.99503 * 13 11 9 16 16 H 1.48493 * 109.47020 * 329.99940 * 13 11 9 17 17 C 1.34778 * 120.00321 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00381 * 175.01432 * 17 2 1 19 19 C 1.50701 * 119.99789 * 355.02200 * 17 2 1 20 20 O 1.42894 * 109.47300 * 179.97438 * 19 17 2 21 21 C 1.42898 * 114.00391 * 179.97438 * 20 19 17 22 22 C 1.50700 * 109.47534 * 179.97438 * 21 20 19 23 23 C 1.35323 * 126.12428 * 359.97438 * 22 21 20 24 24 C 1.39873 * 107.91856 * 180.02562 * 23 22 21 25 25 N 1.30842 * 108.20267 * 0.02562 * 24 23 22 26 26 N 1.34943 * 126.12966 * 179.97438 * 22 21 20 27 27 C 1.46507 * 126.03856 * 0.02562 * 26 22 21 28 28 H 1.08998 * 109.47142 * 269.99590 * 1 2 3 29 29 H 1.08994 * 109.47376 * 30.00057 * 1 2 3 30 30 H 1.09001 * 109.47028 * 149.99826 * 1 2 3 31 31 H 1.09004 * 109.46817 * 34.72134 * 3 2 1 32 32 H 1.08996 * 109.47381 * 154.71966 * 3 2 1 33 33 H 1.09003 * 114.21021 * 254.43578 * 6 4 3 34 34 H 1.08997 * 114.20887 * 27.26019 * 6 4 3 35 35 H 1.09004 * 113.50107 * 219.18395 * 7 6 4 36 36 H 1.08996 * 113.46795 * 88.77048 * 7 6 4 37 37 H 0.96998 * 119.99682 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47310 * 59.99897 * 19 17 2 39 39 H 1.08998 * 109.47176 * 299.99549 * 19 17 2 40 40 H 1.09006 * 109.47011 * 59.99680 * 21 20 19 41 41 H 1.09000 * 109.47160 * 300.00054 * 21 20 19 42 42 H 1.07997 * 126.03762 * 359.75996 * 23 22 21 43 43 H 1.07997 * 125.89765 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46989 * 89.99723 * 27 26 22 45 45 H 1.09004 * 109.47175 * 210.00375 * 27 26 22 46 46 H 1.09001 * 109.46762 * 329.99701 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3496 1.7698 -1.4376 5 1 2.6330 0.9787 -2.1318 6 6 1.1595 2.6100 -1.9212 7 6 2.2566 3.4514 -2.5907 8 7 3.1832 2.9760 -1.5523 9 6 4.3209 3.4487 -0.9547 10 1 4.7647 2.9061 -0.1330 11 6 4.9039 4.6253 -1.4048 12 7 4.3634 5.2863 -2.4064 13 14 6.4564 5.2698 -0.5900 14 1 7.6464 4.7085 -1.2787 15 1 6.4848 6.7516 -0.6812 16 1 6.4723 4.8613 0.8376 17 6 2.1390 -1.1672 0.0005 18 8 3.3483 -1.1692 -0.0908 19 6 1.3897 -2.4698 0.1144 20 8 2.3174 -3.5564 0.0916 21 6 1.7068 -4.8443 0.1949 22 6 2.7721 -5.9096 0.1600 23 6 4.1046 -5.7020 0.0484 24 6 4.7366 -6.9499 0.0544 25 7 3.8164 -7.8735 0.1650 26 7 2.5681 -7.2415 0.2346 27 6 1.2703 -7.9088 0.3633 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6477 2.0057 0.5854 32 1 3.1839 1.1188 0.4388 33 1 0.5024 2.0933 -2.6207 34 1 0.6238 3.1263 -1.1246 35 1 2.0691 4.5243 -2.5469 36 1 2.5152 3.1094 -3.5928 37 1 4.7710 6.1083 -2.7212 38 1 0.6980 -2.5655 -0.7226 39 1 0.8319 -2.4875 1.0506 40 1 1.0210 -4.9892 -0.6400 41 1 1.1562 -4.9111 1.1332 42 1 4.5934 -4.7426 -0.0353 43 1 5.8003 -7.1214 -0.0196 44 1 0.8701 -8.1196 -0.6284 45 1 1.3948 -8.8430 0.9111 46 1 0.5803 -7.2603 0.9033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235756910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:37 Heat of formation + Delta-G solvation = 76.995926 kcal Electronic energy + Delta-G solvation = -26794.570801 eV Core-core repulsion = 22917.400663 eV Total energy + Delta-G solvation = -3877.170138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42992 -39.93230 -38.28837 -37.52712 -35.20384 -33.62391 -32.16246 -31.59564 -29.52291 -27.91429 -27.63165 -27.03727 -26.35899 -25.59068 -23.42332 -22.20290 -21.28269 -20.22234 -19.35820 -19.08880 -17.46277 -17.16646 -16.93216 -16.64256 -16.22951 -15.80186 -15.65594 -15.05154 -14.77929 -14.57522 -14.17120 -13.88906 -13.71168 -13.62583 -13.21659 -12.97854 -12.91543 -12.70458 -12.65074 -12.55980 -12.41423 -11.87797 -11.77452 -11.45407 -11.11557 -10.91099 -10.88816 -10.72086 -10.41002 -10.25605 -9.82902 -9.81248 -9.64095 -9.47355 -9.36762 -8.75117 -8.67901 -8.32310 -6.83050 -5.72276 -3.03912 1.58111 2.06162 2.69354 2.71570 2.75929 3.44552 3.49685 3.50932 3.60744 4.22339 4.29542 4.51315 4.52966 4.67982 4.69662 4.76952 4.82057 4.91277 4.95059 5.00808 5.08430 5.22236 5.32100 5.46905 5.50057 5.51007 5.59290 5.65974 5.80340 5.97827 6.03716 6.17377 6.30203 6.43266 6.47356 6.51361 6.63714 6.69274 6.77699 6.88934 7.26991 7.42661 7.47310 7.51620 7.60908 8.03215 8.32696 9.09865 9.75933 10.69416 11.45974 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002393 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.222135 B =11698.611704 C =12831.638010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.133 3.867 5 H 0.043 0.957 6 C -0.170 4.170 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.081 0.919 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.508 3.492 18 O -0.509 6.509 19 C 0.048 3.952 20 O -0.348 6.348 21 C 0.131 3.869 22 C 0.071 3.929 23 C -0.236 4.236 24 C 0.045 3.955 25 N -0.296 5.296 26 N -0.375 5.375 27 C 0.099 3.901 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.158 0.842 43 H 0.186 0.814 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 -22.060 6.077 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C -0.006 4.006 4 C 0.025 3.975 5 H 0.061 0.939 6 C -0.208 4.208 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.342 4.342 10 H 0.099 0.901 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.294 3.706 18 O -0.382 6.382 19 C -0.032 4.032 20 O -0.265 6.265 21 C 0.053 3.947 22 C -0.056 4.056 23 C -0.265 4.265 24 C -0.140 4.140 25 N -0.117 5.117 26 N -0.160 5.160 27 C -0.042 4.042 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.175 0.825 43 H 0.203 0.797 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.160 -23.094 6.160 27.781 hybrid contribution 0.676 1.140 0.160 1.334 sum -13.484 -21.955 6.320 26.529 Atomic orbital electron populations 1.21843 0.79888 1.03491 1.01590 1.47807 1.06818 1.06174 1.73789 1.21898 0.97427 0.82037 0.99226 1.22413 0.90405 0.91163 0.93545 0.93920 1.23793 0.96304 1.00053 1.00657 1.21950 0.85133 0.98555 0.91137 1.45705 1.28323 1.16094 1.42517 1.18942 0.99889 1.04500 1.10853 0.90091 1.24807 0.99140 0.98283 0.98253 1.69845 1.40886 1.17848 1.28261 0.86129 0.83152 0.77826 0.78765 1.21565 1.21709 1.20536 1.20060 0.88165 0.84599 0.77815 1.90785 1.13825 1.86621 1.47013 1.22313 0.92056 0.86454 1.02366 1.88033 1.31606 1.11984 1.94910 1.20562 0.91535 0.81651 1.00995 1.20492 0.96564 0.84839 1.03692 1.21438 0.92018 0.99711 1.13373 1.23953 0.99613 0.90876 0.99580 1.77373 0.88121 1.21264 1.24984 1.48372 1.06551 1.03131 1.57954 1.21853 0.80042 0.99153 1.03165 0.92682 0.90092 0.91646 0.90358 0.89698 0.92790 0.90544 0.91584 0.95763 0.93726 0.90143 0.90161 0.91282 0.91364 0.82464 0.79725 0.90701 0.89149 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.23 59.85 0.61 1.26 16 2 N -0.61 -8.45 2.87 -181.58 -0.52 -8.97 16 3 C 0.12 2.09 5.37 -4.04 -0.02 2.07 16 4 C 0.13 2.75 4.31 -72.39 -0.31 2.44 16 5 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.17 -3.06 7.13 -26.15 -0.19 -3.24 16 7 C 0.16 3.75 7.28 -8.44 -0.06 3.69 16 8 N -0.60 -15.66 3.65 -176.78 -0.64 -16.30 16 9 C -0.21 -6.15 10.55 -15.06 -0.16 -6.31 16 10 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.91 11.64 55.49 0.65 -27.27 16 13 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.51 7.72 7.74 -10.98 -0.08 7.63 16 18 O -0.51 -10.56 16.05 -14.35 -0.23 -10.79 16 19 C 0.05 0.48 5.09 36.01 0.18 0.66 16 20 O -0.35 -4.25 9.17 -55.14 -0.51 -4.76 16 21 C 0.13 1.10 5.90 36.01 0.21 1.31 16 22 C 0.07 0.77 6.91 -82.26 -0.57 0.20 16 23 C -0.24 -2.96 10.14 -40.01 -0.41 -3.36 16 24 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 25 N -0.30 -3.62 12.58 30.63 0.39 -3.23 16 26 N -0.37 -3.82 4.01 -63.88 -0.26 -4.07 16 27 C 0.10 0.52 11.27 59.85 0.67 1.19 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.70 7.15 -51.93 -0.37 0.33 16 30 H 0.06 0.39 6.48 -51.93 -0.34 0.05 16 31 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 32 H 0.08 1.80 7.35 -51.93 -0.38 1.41 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.07 1.71 7.37 -51.93 -0.38 1.33 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 0.57 7.25 -51.93 -0.38 0.19 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.16 2.12 7.85 -52.49 -0.41 1.71 16 43 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.23 7.79 -51.93 -0.40 -0.17 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -38.67 384.78 -8.03 -46.70 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.26 Total: -2.38 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.42 Total: 7.51 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.39 Total: -59.84 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.74 Total: -15.55 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.67 -8.03 -46.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235756910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.693 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds