Wall clock time and date at job start Fri Apr 10 2020 18:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00200 * 2 1 4 4 C 1.52996 * 109.47210 * 274.72605 * 3 2 1 5 5 H 1.08996 * 112.74062 * 316.18630 * 4 3 2 6 6 C 1.53500 * 113.46755 * 86.92437 * 4 3 2 7 7 C 1.53618 * 83.30403 * 140.83193 * 6 4 3 8 8 N 1.47062 * 88.00623 * 333.97838 * 7 6 4 9 9 C 1.36929 * 136.06145 * 207.10738 * 8 7 6 10 10 H 1.08000 * 120.00417 * 174.73728 * 9 8 7 11 11 C 1.38816 * 119.99971 * 354.73916 * 9 8 7 12 12 N 1.31621 * 119.99812 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00207 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46857 * 89.99504 * 13 11 9 15 15 H 1.48492 * 109.47446 * 209.99503 * 13 11 9 16 16 H 1.48493 * 109.47020 * 329.99940 * 13 11 9 17 17 C 1.34778 * 120.00321 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00381 * 175.01432 * 17 2 1 19 19 C 1.50701 * 119.99789 * 355.02200 * 17 2 1 20 20 O 1.42894 * 109.47300 * 179.97438 * 19 17 2 21 21 C 1.42898 * 114.00391 * 179.97438 * 20 19 17 22 22 C 1.50700 * 109.47534 * 179.97438 * 21 20 19 23 23 C 1.35323 * 126.12428 * 359.97438 * 22 21 20 24 24 C 1.39873 * 107.91856 * 180.02562 * 23 22 21 25 25 N 1.30842 * 108.20267 * 0.02562 * 24 23 22 26 26 N 1.34943 * 126.12966 * 179.97438 * 22 21 20 27 27 C 1.46507 * 126.03856 * 0.02562 * 26 22 21 28 28 H 1.08998 * 109.47142 * 269.99590 * 1 2 3 29 29 H 1.08994 * 109.47376 * 30.00057 * 1 2 3 30 30 H 1.09001 * 109.47028 * 149.99826 * 1 2 3 31 31 H 1.09004 * 109.46817 * 34.72134 * 3 2 1 32 32 H 1.08996 * 109.47381 * 154.71966 * 3 2 1 33 33 H 1.09003 * 114.21021 * 254.43578 * 6 4 3 34 34 H 1.08997 * 114.20887 * 27.26019 * 6 4 3 35 35 H 1.09004 * 113.50107 * 219.18395 * 7 6 4 36 36 H 1.08996 * 113.46795 * 88.77048 * 7 6 4 37 37 H 0.96998 * 119.99682 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47310 * 59.99897 * 19 17 2 39 39 H 1.08998 * 109.47176 * 299.99549 * 19 17 2 40 40 H 1.09006 * 109.47011 * 59.99680 * 21 20 19 41 41 H 1.09000 * 109.47160 * 300.00054 * 21 20 19 42 42 H 1.07997 * 126.03762 * 359.75996 * 23 22 21 43 43 H 1.07997 * 125.89765 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46989 * 89.99723 * 27 26 22 45 45 H 1.09004 * 109.47175 * 210.00375 * 27 26 22 46 46 H 1.09001 * 109.46762 * 329.99701 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3496 1.7698 -1.4376 5 1 2.6330 0.9787 -2.1318 6 6 1.1595 2.6100 -1.9212 7 6 2.2566 3.4514 -2.5907 8 7 3.1832 2.9760 -1.5523 9 6 4.3209 3.4487 -0.9547 10 1 4.7647 2.9061 -0.1330 11 6 4.9039 4.6253 -1.4048 12 7 4.3634 5.2863 -2.4064 13 14 6.4564 5.2698 -0.5900 14 1 7.6464 4.7085 -1.2787 15 1 6.4848 6.7516 -0.6812 16 1 6.4723 4.8613 0.8376 17 6 2.1390 -1.1672 0.0005 18 8 3.3483 -1.1692 -0.0908 19 6 1.3897 -2.4698 0.1144 20 8 2.3174 -3.5564 0.0916 21 6 1.7068 -4.8443 0.1949 22 6 2.7721 -5.9096 0.1600 23 6 4.1046 -5.7020 0.0484 24 6 4.7366 -6.9499 0.0544 25 7 3.8164 -7.8735 0.1650 26 7 2.5681 -7.2415 0.2346 27 6 1.2703 -7.9088 0.3633 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6477 2.0057 0.5854 32 1 3.1839 1.1188 0.4388 33 1 0.5024 2.0933 -2.6207 34 1 0.6238 3.1263 -1.1246 35 1 2.0691 4.5243 -2.5469 36 1 2.5152 3.1094 -3.5928 37 1 4.7710 6.1083 -2.7212 38 1 0.6980 -2.5655 -0.7226 39 1 0.8319 -2.4875 1.0506 40 1 1.0210 -4.9892 -0.6400 41 1 1.1562 -4.9111 1.1332 42 1 4.5934 -4.7426 -0.0353 43 1 5.8003 -7.1214 -0.0196 44 1 0.8701 -8.1196 -0.6284 45 1 1.3948 -8.8430 0.9111 46 1 0.5803 -7.2603 0.9033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235756910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:36 Heat of formation + Delta-G solvation = 49.124115 kcal Electronic energy + Delta-G solvation = -26795.779413 eV Core-core repulsion = 22917.400663 eV Total energy + Delta-G solvation = -3878.378750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20580 -41.10567 -39.78021 -38.53898 -36.42708 -34.30131 -34.27822 -32.37143 -30.71780 -29.91250 -28.56741 -27.63383 -27.18919 -26.50916 -25.42266 -23.73123 -22.09901 -21.08561 -20.96018 -20.26054 -18.74328 -18.30183 -17.99974 -17.56697 -17.25808 -17.04796 -16.61885 -16.45547 -15.99819 -15.83421 -15.39555 -15.16506 -14.87888 -14.55898 -14.37240 -13.96434 -13.87258 -13.63160 -13.60242 -13.43865 -13.25798 -13.19873 -13.11081 -12.95122 -12.62835 -12.58699 -12.45869 -12.23835 -11.83266 -11.73826 -11.60502 -11.21571 -10.94089 -10.87679 -10.72325 -10.18580 -9.58529 -9.49605 -8.91739 -7.93553 -5.25776 0.79977 1.37895 1.41681 1.44751 1.52917 1.63076 1.81997 1.86867 2.45778 2.83923 3.27668 3.48232 3.51581 3.66647 3.76001 3.84520 4.13281 4.18312 4.24770 4.25620 4.32364 4.35212 4.38765 4.46742 4.48804 4.54860 4.68123 4.71239 4.74010 4.79936 4.88384 4.96347 4.99906 5.05310 5.12529 5.16621 5.23347 5.46991 5.54321 5.67124 5.74830 5.91983 5.94840 6.11166 6.49360 6.66495 6.91180 7.24123 7.58672 8.60215 9.24651 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002393 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.222135 B =11698.611704 C =12831.638010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.131 3.869 4 C 0.132 3.868 5 H 0.022 0.978 6 C -0.124 4.124 7 C 0.146 3.854 8 N -0.633 5.633 9 C -0.224 4.224 10 H 0.075 0.925 11 C -0.067 4.067 12 N -0.952 5.952 13 Si 0.975 3.025 14 H -0.291 1.291 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.495 3.505 18 O -0.584 6.584 19 C 0.058 3.942 20 O -0.392 6.392 21 C 0.131 3.869 22 C 0.075 3.925 23 C -0.278 4.278 24 C 0.038 3.962 25 N -0.325 5.325 26 N -0.371 5.371 27 C 0.086 3.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.007 0.993 37 H 0.249 0.751 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.202 0.798 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 -23.664 7.203 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.340 5.340 3 C 0.007 3.993 4 C 0.025 3.975 5 H 0.039 0.961 6 C -0.162 4.162 7 C 0.021 3.979 8 N -0.360 5.360 9 C -0.352 4.352 10 H 0.093 0.907 11 C -0.260 4.260 12 N -0.601 5.601 13 Si 0.803 3.197 14 H -0.218 1.218 15 H -0.213 1.213 16 H -0.193 1.193 17 C 0.283 3.717 18 O -0.463 6.463 19 C -0.021 4.021 20 O -0.310 6.310 21 C 0.053 3.947 22 C -0.054 4.054 23 C -0.307 4.307 24 C -0.147 4.147 25 N -0.148 5.148 26 N -0.156 5.156 27 C -0.053 4.053 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.152 0.848 43 H 0.219 0.781 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.311 -24.751 7.305 31.643 hybrid contribution 1.852 1.566 -0.214 2.435 sum -16.459 -23.185 7.090 29.304 Atomic orbital electron populations 1.22274 0.75842 1.05516 1.04018 1.47872 1.09052 1.04297 1.72753 1.21421 0.96399 0.84603 0.96899 1.22501 0.90449 0.89524 0.95005 0.96078 1.23544 0.94677 0.97264 1.00672 1.22019 0.87507 0.97850 0.90548 1.46134 1.28232 1.18635 1.42971 1.19207 1.00807 1.04439 1.10743 0.90741 1.25618 1.02259 0.98817 0.99285 1.70012 1.42213 1.18125 1.29781 0.85128 0.79192 0.77063 0.78314 1.21832 1.21345 1.19294 1.21231 0.87721 0.86657 0.76047 1.90757 1.17313 1.87781 1.50439 1.22406 0.90943 0.82726 1.06015 1.87994 1.33828 1.13729 1.95429 1.20864 0.90634 0.79163 1.04033 1.20946 0.96747 0.85926 1.01731 1.21429 0.93572 0.99179 1.16529 1.24248 1.00626 0.90506 0.99273 1.77296 0.89249 1.22024 1.26198 1.48731 1.07288 1.03006 1.56581 1.22313 0.78338 0.99919 1.04752 0.90034 0.89803 0.87975 0.88748 0.94147 0.88524 0.88410 0.94349 0.97472 0.94207 0.86188 0.86009 0.88079 0.87879 0.84829 0.78130 0.89166 0.88710 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.23 127.77 1.31 2.06 16 2 N -0.61 -15.36 2.87 -846.77 -2.43 -17.79 16 3 C 0.13 4.66 5.37 86.38 0.46 5.12 16 4 C 0.13 5.48 4.31 41.79 0.18 5.66 16 5 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 6 C -0.12 -4.17 7.13 30.97 0.22 -3.95 16 7 C 0.15 7.07 7.28 83.22 0.61 7.68 16 8 N -0.63 -33.97 3.65 -713.21 -2.60 -36.58 16 9 C -0.22 -13.30 10.55 84.04 0.89 -12.41 16 10 H 0.07 4.39 7.83 -2.91 -0.02 4.36 16 11 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 12 N -0.95 -59.62 11.64 21.65 0.25 -59.37 16 13 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 14 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.49 14.43 7.74 87.66 0.68 15.10 16 18 O -0.58 -25.38 16.05 16.01 0.26 -25.12 16 19 C 0.06 0.91 5.09 71.24 0.36 1.28 16 20 O -0.39 -8.75 9.17 -129.94 -1.19 -9.94 16 21 C 0.13 1.70 5.90 71.24 0.42 2.12 16 22 C 0.07 1.53 6.91 41.41 0.29 1.82 16 23 C -0.28 -7.27 10.14 21.99 0.22 -7.04 16 24 C 0.04 0.90 12.03 85.24 1.03 1.93 16 25 N -0.33 -7.89 12.58 -57.02 -0.72 -8.61 16 26 N -0.37 -6.90 4.01 -356.01 -1.43 -8.33 16 27 C 0.09 0.62 11.27 127.77 1.44 2.06 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.99 7.15 -2.39 -0.02 0.97 16 30 H 0.10 0.50 6.48 -2.39 -0.02 0.48 16 31 H 0.09 3.01 7.84 -2.39 -0.02 2.99 16 32 H 0.04 1.79 7.35 -2.39 -0.02 1.78 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.10 2.93 7.93 -2.39 -0.02 2.92 16 35 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.12 0.95 7.25 -2.39 -0.02 0.93 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.13 4.03 7.85 -2.91 -0.02 4.01 16 43 H 0.20 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.12 0.06 7.79 -2.39 -0.02 0.05 16 Total: -1.00 -94.13 384.78 3.70 -90.44 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.96 Total: 7.16 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 8.57 Total: 17.89 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -6.93 Total: -130.68 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.93 Total: -35.07 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -94.13 3.70 -90.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235756910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.561 kcal (2) G-P(sol) polarization free energy of solvation -94.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds