Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38566 * 126.98272 * 2 1 4 4 C 1.38268 * 126.54944 * 359.96672 * 3 2 1 5 5 H 1.07998 * 120.00015 * 7.66529 * 4 3 2 6 6 C 1.46386 * 120.00178 * 187.66341 * 4 3 2 7 7 N 1.29640 * 120.00219 * 189.97101 * 6 4 3 8 8 Si 1.86805 * 120.00048 * 9.69538 * 6 4 3 9 9 H 1.48503 * 109.47074 * 270.27647 * 8 6 4 10 10 H 1.48499 * 109.47008 * 30.27432 * 8 6 4 11 11 H 1.48499 * 109.47262 * 150.27409 * 8 6 4 12 12 N 1.34121 * 106.90161 * 179.70332 * 3 2 1 13 13 N 1.28583 * 109.36866 * 0.26511 * 12 3 2 14 14 C 1.33817 * 109.96559 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.13105 * 179.97438 * 14 13 12 16 16 C 1.76197 * 100.00123 * 0.02562 * 15 14 13 17 17 N 1.31449 * 119.41122 * 0.02562 * 16 15 14 18 18 C 1.33381 * 121.93876 * 179.97438 * 17 16 15 19 19 C 1.35903 * 120.55803 * 0.02562 * 18 17 16 20 20 N 1.48031 * 120.60346 * 180.02562 * 19 18 17 21 21 O 1.31702 * 120.00003 * 359.97438 * 20 19 18 22 22 O 1.31698 * 120.00548 * 179.97438 * 20 19 18 23 23 C 1.41783 * 118.79805 * 359.97438 * 19 18 17 24 24 N 1.31504 * 120.87725 * 180.02562 * 23 19 18 25 25 N 1.36426 * 119.40749 * 179.72496 * 16 15 14 26 26 H 0.96995 * 120.35850 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.47165 * 89.99558 * 1 2 3 28 28 H 1.09004 * 109.46907 * 209.99662 * 1 2 3 29 29 H 1.09001 * 109.47252 * 329.99725 * 1 2 3 30 30 H 0.97001 * 119.99755 * 354.52474 * 7 6 4 31 31 H 1.07999 * 119.72276 * 180.02562 * 18 17 16 32 32 H 0.97000 * 120.00121 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2985 1.1069 0.0000 4 6 1.9066 2.4328 -0.0006 5 1 0.8645 2.6880 0.1235 6 6 2.9040 3.4909 -0.1696 7 7 2.5735 4.7298 0.0213 8 14 4.6551 3.0552 -0.6529 9 1 5.4632 2.8232 0.5712 10 1 4.6478 1.8233 -1.4821 11 1 5.2462 4.1728 -1.4319 12 7 3.5582 0.6464 0.0066 13 7 3.5422 -0.6393 0.0050 14 6 2.2789 -1.0806 -0.0022 15 16 1.7674 -2.7667 -0.0077 16 6 3.3390 -3.5633 -0.0001 17 7 4.4324 -2.8338 0.0076 18 6 5.6476 -3.3837 0.0140 19 6 5.7945 -4.7348 0.0123 20 7 7.1426 -5.3463 0.0200 21 8 8.2134 -4.5795 0.0281 22 8 7.2714 -6.6569 0.0187 23 6 4.6332 -5.5481 0.0040 24 7 4.7279 -6.8598 0.0026 25 7 3.3992 -4.9262 0.0038 26 1 2.5847 -5.4529 0.0021 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6488 4.9634 0.1980 31 1 6.5221 -2.7501 0.0207 32 1 3.9249 -7.4040 -0.0035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360100975.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 156.901787 kcal Electronic energy + Delta-G solvation = -23906.756003 eV Core-core repulsion = 20035.171271 eV Total energy + Delta-G solvation = -3871.584732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.059 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.63302 -42.51486 -39.57103 -37.14688 -35.76252 -35.39264 -35.15129 -34.95307 -32.17026 -31.61498 -28.60137 -28.14163 -26.90970 -25.72834 -24.64530 -23.33945 -22.14479 -20.61113 -20.27366 -20.13154 -19.82610 -18.47815 -18.06866 -17.63859 -17.34614 -16.99207 -16.77652 -16.35904 -16.18616 -15.66529 -15.19249 -14.90579 -14.56424 -14.08976 -13.58599 -13.52188 -13.04526 -12.96703 -12.69802 -12.53315 -12.29414 -12.22722 -12.04573 -11.76276 -11.63427 -11.38502 -11.23235 -11.01976 -10.74920 -10.58300 -10.32089 -9.67389 -9.54555 -9.09555 -6.80588 -1.92355 -0.77453 -0.46374 0.16399 0.25312 0.35248 1.01459 1.36854 1.56789 1.65731 1.90236 1.97524 2.18367 2.26092 2.41351 2.67680 2.86871 3.01773 3.39317 3.85833 3.96853 4.27525 4.39370 4.48694 4.52351 4.61168 4.82549 4.86032 5.22487 5.30295 5.42841 5.78910 5.83821 6.02182 6.09699 6.21524 6.66240 6.82825 7.79385 8.25995 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.003901 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.043832 B = 7175.537737 C = 8705.639610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.511 5.511 3 C 0.329 3.671 4 C -0.513 4.513 5 H 0.087 0.913 6 C 0.049 3.951 7 N -0.790 5.790 8 Si 1.133 2.867 9 H -0.284 1.284 10 H -0.262 1.262 11 H -0.298 1.298 12 N -0.447 5.447 13 N -0.209 5.209 14 C -0.028 4.028 15 S 0.367 5.633 16 C 0.380 3.620 17 N -0.511 5.511 18 C 0.303 3.697 19 C -0.151 4.151 20 N 0.027 4.973 21 O -0.270 6.270 22 O -0.180 6.180 23 C 0.437 3.563 24 N -0.695 5.695 25 N -0.610 5.610 26 H 0.446 0.554 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.294 0.706 31 H 0.197 0.803 32 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 -13.533 -0.543 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.212 5.212 3 C 0.089 3.911 4 C -0.554 4.554 5 H 0.105 0.895 6 C -0.178 4.178 7 N -0.412 5.412 8 Si 0.959 3.041 9 H -0.210 1.210 10 H -0.188 1.188 11 H -0.227 1.227 12 N -0.301 5.301 13 N -0.054 5.054 14 C -0.398 4.398 15 S 0.604 5.396 16 C 0.010 3.990 17 N -0.239 5.239 18 C 0.146 3.854 19 C -0.257 4.257 20 N 0.483 4.517 21 O -0.435 6.435 22 O -0.370 6.370 23 C 0.161 3.839 24 N -0.330 5.330 25 N -0.245 5.245 26 H 0.291 0.709 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.213 0.787 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.168 -12.868 -0.748 15.817 hybrid contribution -2.540 -0.501 0.470 2.631 sum -11.708 -13.369 -0.278 17.773 Atomic orbital electron populations 1.21999 0.74654 1.04917 1.04044 1.45553 1.07987 1.03564 1.64067 1.21456 0.85804 0.89461 0.94358 1.20429 0.97295 0.88068 1.49617 0.89512 1.29226 1.08677 0.90954 0.88911 1.70197 1.23156 1.19813 1.27989 0.82522 0.69075 0.73944 0.78556 1.21013 1.18764 1.22661 1.74834 1.16377 1.02831 1.36046 1.75313 1.14720 1.03728 1.11679 1.26024 0.91978 0.95288 1.26559 1.82977 0.90061 0.85446 1.81135 1.26588 1.02775 0.84181 0.85485 1.70170 0.95821 1.31505 1.26407 1.23074 0.97388 0.89947 0.75004 1.20282 0.80348 0.92666 1.32421 1.49809 1.03191 1.02811 0.95892 1.96255 1.25914 1.59345 1.61945 1.96274 1.95375 0.89571 1.55819 1.18803 0.82347 0.89507 0.93291 1.70961 1.36653 0.99238 1.26101 1.44611 1.10144 1.04810 1.64939 0.70905 0.89983 0.87795 0.90070 0.89318 0.78672 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 10.84 127.77 1.38 3.40 16 2 N -0.51 -18.24 3.22 -544.01 -1.75 -19.99 16 3 C 0.33 15.06 7.24 132.48 0.96 16.02 16 4 C -0.51 -24.27 9.72 24.40 0.24 -24.03 16 5 H 0.09 3.93 7.42 -2.91 -0.02 3.91 16 6 C 0.05 2.39 5.69 87.14 0.50 2.89 16 7 N -0.79 -38.06 13.59 23.19 0.31 -37.75 16 8 Si 1.13 51.45 26.60 68.60 1.82 53.28 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.26 -12.50 6.21 99.48 0.62 -11.89 16 11 H -0.30 -12.81 7.11 99.48 0.71 -12.11 16 12 N -0.45 -21.88 7.64 -55.28 -0.42 -22.30 16 13 N -0.21 -8.94 9.40 -56.22 -0.53 -9.47 16 14 C -0.03 -0.93 8.02 179.19 1.44 0.51 16 15 S 0.37 6.41 22.05 -56.49 -1.25 5.16 16 16 C 0.38 7.92 7.96 179.54 1.43 9.35 16 17 N -0.51 -14.83 7.08 -195.69 -1.39 -16.22 16 18 C 0.30 8.62 10.71 83.92 0.90 9.52 16 19 C -0.15 -4.43 6.94 36.71 0.25 -4.18 16 20 N 0.03 0.97 4.99 -45.66 -0.23 0.75 16 21 O -0.27 -10.31 19.17 3.51 0.07 -10.25 16 22 O -0.18 -6.92 18.02 3.52 0.06 -6.85 16 23 C 0.44 10.21 7.84 134.27 1.05 11.27 16 24 N -0.69 -16.65 12.16 -54.65 -0.66 -17.31 16 25 N -0.61 -9.21 5.47 -191.52 -1.05 -10.25 16 26 H 0.45 2.49 8.81 -92.71 -0.82 1.67 16 27 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.10 1.60 7.79 -2.39 -0.02 1.58 16 29 H 0.08 1.98 7.44 -2.39 -0.02 1.96 16 30 H 0.29 13.33 8.74 -92.71 -0.81 12.52 16 31 H 0.20 5.42 7.56 -2.91 -0.02 5.40 16 32 H 0.36 5.76 8.89 -92.71 -0.82 4.93 16 Total: -1.00 -72.01 309.54 2.63 -69.38 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: -0.52 Total: -2.92 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 8.15 Total: 24.74 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -5.71 Total: -132.54 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.13 Total: -17.10 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 1.82 Total: 53.28 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.25 Total: 5.16 kcal Total: -72.01 2.63 -69.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360100975.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.282 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds