Wall clock time and date at job start Fri Apr 10 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46911 * 305.36516 * 3 2 1 5 5 C 1.36936 * 119.99896 * 77.84660 * 4 3 2 6 6 H 1.07997 * 120.00329 * 354.89513 * 5 4 3 7 7 C 1.38817 * 119.99910 * 174.89504 * 5 4 3 8 8 N 1.31625 * 119.99760 * 315.29265 * 7 5 4 9 9 Si 1.86797 * 120.00053 * 135.29751 * 7 5 4 10 10 H 1.48498 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47124 * 119.99915 * 9 7 5 12 12 H 1.48500 * 109.47325 * 239.99695 * 9 7 5 13 13 S 1.65602 * 120.00084 * 257.56912 * 4 3 2 14 14 O 1.42106 * 106.40142 * 248.68845 * 13 4 3 15 15 O 1.42102 * 106.40107 * 21.60694 * 13 4 3 16 16 C 1.76200 * 107.21989 * 135.14838 * 13 4 3 17 17 C 1.37964 * 119.92096 * 112.21326 * 16 13 4 18 18 C 1.39612 * 119.84265 * 179.77393 * 17 16 13 19 19 C 1.47724 * 120.14891 * 180.23080 * 18 17 16 20 20 O 1.21471 * 120.00481 * 0.27047 * 19 18 17 21 21 O 1.34713 * 120.00301 * 180.27219 * 19 18 17 22 22 C 1.39652 * 119.70367 * 0.50158 * 18 17 16 23 23 C 1.37923 * 119.84201 * 359.74830 * 22 18 17 24 24 C 1.38340 * 119.92664 * 292.48874 * 16 13 4 25 25 C 1.50705 * 119.84556 * 0.02562 * 24 16 13 26 26 H 4.40635 * 5.51399 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46773 * 185.36782 * 3 2 1 28 28 H 1.09001 * 109.47023 * 65.36882 * 3 2 1 29 29 H 0.97004 * 119.99767 * 185.31045 * 8 7 5 30 30 H 1.07998 * 120.08232 * 0.02562 * 17 16 13 31 31 H 0.96700 * 117.00561 * 179.97438 * 21 19 18 32 32 H 1.07995 * 120.07927 * 179.72817 * 22 18 17 33 33 H 1.08001 * 119.92098 * 179.97438 * 23 22 18 34 34 H 1.09003 * 109.47355 * 92.14665 * 25 24 16 35 35 H 1.08995 * 109.46893 * 212.14615 * 25 24 16 36 36 H 1.09000 * 109.47174 * 332.14681 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.7985 1.1263 5 6 3.1280 -2.1657 1.0496 6 1 2.6874 -2.6565 0.1944 7 6 3.6878 -2.9209 2.0710 8 7 4.8548 -2.5817 2.5767 9 14 2.7850 -4.4185 2.7279 10 1 1.5035 -4.5843 1.9962 11 1 3.6251 -5.6275 2.5338 12 1 2.5089 -4.2348 4.1754 13 16 3.7013 -0.0485 2.4897 14 8 5.1009 -0.2916 2.5290 15 8 3.1387 1.2564 2.4930 16 6 3.0107 -0.8916 3.8742 17 6 3.8269 -1.6251 4.7104 18 6 3.2787 -2.2886 5.8097 19 6 4.1471 -3.0717 6.7124 20 8 5.3418 -3.1354 6.5019 21 8 3.6142 -3.7153 7.7691 22 6 1.9049 -2.2134 6.0488 23 6 1.0999 -1.4808 5.2018 24 6 1.6506 -0.8213 4.1170 25 6 0.7645 -0.0236 3.1951 26 1 -1.0499 -0.0003 0.0001 27 1 3.0088 1.0240 0.0961 28 1 3.0095 -0.4275 -0.9342 29 1 5.2819 -3.1513 3.2355 30 1 4.8880 -1.6825 4.5175 31 1 4.2221 -4.2151 8.3310 32 1 1.4738 -2.7279 6.8949 33 1 0.0372 -1.4220 5.3853 34 1 0.3734 -0.6749 2.4135 35 1 -0.0636 0.3996 3.7635 36 1 1.3429 0.7813 2.7417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382947389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:10 Heat of formation + Delta-G solvation = -34.098324 kcal Electronic energy + Delta-G solvation = -26741.956568 eV Core-core repulsion = 22901.044291 eV Total energy + Delta-G solvation = -3840.912277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.071 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.09622 -38.45390 -36.16760 -36.00784 -35.81488 -34.23311 -33.08602 -32.48565 -31.47839 -30.31161 -27.29571 -26.80864 -23.80222 -23.14667 -22.56439 -20.62972 -19.21174 -18.38983 -17.76624 -17.40777 -16.55960 -15.86404 -15.43027 -15.38925 -15.22435 -14.87923 -14.55052 -14.17487 -13.87870 -13.56676 -13.41803 -13.16055 -12.89859 -12.66336 -12.27126 -11.94838 -11.85746 -11.69154 -11.35409 -11.27939 -11.09092 -10.85843 -10.50507 -10.41836 -10.33836 -10.20809 -10.07881 -9.89412 -9.60459 -9.52021 -9.33542 -8.85158 -8.36180 -8.02884 -6.63819 -3.84349 1.04801 1.55367 1.91025 2.80727 3.05630 3.22325 3.25251 3.25954 3.33117 3.41110 3.93224 4.08791 4.49172 4.57775 4.94264 4.99858 5.09917 5.20974 5.38314 5.52013 5.70668 5.87572 5.93266 6.11507 6.13747 6.18122 6.27386 6.34654 6.45630 6.56256 6.60732 6.67966 6.69884 6.91903 6.94516 7.29019 7.37349 8.02407 8.12507 8.16072 8.65919 9.04012 10.22676 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.006881 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.044310 B = 4068.262195 C = 4208.588237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C 0.227 3.773 4 N -0.832 5.832 5 C -0.275 4.275 6 H 0.102 0.898 7 C 0.013 3.987 8 N -0.759 5.759 9 Si 0.866 3.134 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.259 1.259 13 S 2.604 3.396 14 O -0.921 6.921 15 O -1.026 7.026 16 C -0.646 4.646 17 C 0.064 3.936 18 C -0.180 4.180 19 C 0.527 3.473 20 O -0.512 6.512 21 O -0.518 6.518 22 C -0.025 4.025 23 C -0.176 4.176 24 C 0.054 3.946 25 C -0.174 4.174 26 H 0.209 0.791 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.283 0.717 30 H 0.167 0.833 31 H 0.408 0.592 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 0.037 3.488 8.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.171 4.171 3 C 0.100 3.900 4 N -0.658 5.658 5 C -0.415 4.415 6 H 0.120 0.880 7 C -0.199 4.199 8 N -0.396 5.396 9 Si 0.689 3.311 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.184 1.184 13 S 2.701 3.299 14 O -0.910 6.910 15 O -1.014 7.014 16 C -0.725 4.725 17 C 0.045 3.955 18 C -0.183 4.183 19 C 0.372 3.628 20 O -0.401 6.401 21 O -0.330 6.330 22 C -0.043 4.043 23 C -0.194 4.194 24 C 0.052 3.948 25 C -0.230 4.230 26 H 0.226 0.774 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.266 0.734 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.607 1.097 3.509 7.561 hybrid contribution -0.874 -2.020 1.306 2.559 sum -7.481 -0.924 4.815 8.944 Atomic orbital electron populations 1.24662 0.95673 1.02797 1.01890 1.24224 0.95415 0.98432 0.98994 1.18261 0.83247 0.96129 0.92340 1.53809 1.75594 1.14001 1.22378 1.18984 1.36371 0.79240 1.06927 0.87982 1.25274 0.95382 1.00470 0.98805 1.70854 1.07601 1.37064 1.24123 0.86837 0.81368 0.81811 0.81041 1.18878 1.20659 1.18382 1.08042 0.76318 0.72840 0.72733 1.93557 1.28648 1.84130 1.84678 1.93268 1.79341 1.41884 1.86956 1.31543 1.02148 1.15915 1.22919 1.21389 1.02108 0.85218 0.86822 1.19021 0.93560 1.06634 0.99036 1.21004 0.86531 0.76491 0.78735 1.90890 1.16542 1.60479 1.72185 1.84562 1.46224 1.62919 1.39306 1.21402 0.92255 0.93594 0.97087 1.20995 0.99747 1.01780 0.96916 1.19824 0.92508 0.90121 0.92308 1.21801 1.00122 1.01733 0.99338 0.77418 0.88992 0.88158 0.90433 0.81545 0.73442 0.85176 0.85541 0.89240 0.91252 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.53 17.90 29.55 0.53 -3.00 16 2 C -0.17 -2.96 12.24 -37.12 -0.45 -3.41 16 3 C 0.23 4.22 5.93 -6.83 -0.04 4.18 16 4 N -0.83 -18.54 2.93 -62.78 -0.18 -18.73 16 5 C -0.27 -6.43 9.33 -15.06 -0.14 -6.57 16 6 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.01 0.31 3.01 -17.43 -0.05 0.26 16 8 N -0.76 -19.53 7.35 55.49 0.41 -19.12 16 9 Si 0.87 19.13 28.64 -169.99 -4.87 14.26 16 10 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.26 -5.68 5.81 56.52 0.33 -5.35 16 13 S 2.60 62.32 4.32 -107.50 -0.46 61.85 16 14 O -0.92 -24.90 14.34 -57.17 -0.82 -25.72 16 15 O -1.03 -24.51 13.94 -57.17 -0.80 -25.31 16 16 C -0.65 -14.51 3.99 -39.64 -0.16 -14.67 16 17 C 0.06 1.45 5.94 -39.17 -0.23 1.22 16 18 C -0.18 -3.60 4.82 -104.98 -0.51 -4.10 16 19 C 0.53 9.79 8.27 34.61 0.29 10.07 16 20 O -0.51 -10.78 17.13 -19.24 -0.33 -11.11 16 21 O -0.52 -7.18 12.68 -40.53 -0.51 -7.69 16 22 C -0.02 -0.43 9.39 -39.17 -0.37 -0.80 16 23 C -0.18 -3.03 9.69 -39.64 -0.38 -3.42 16 24 C 0.05 1.07 5.88 -104.53 -0.61 0.45 16 25 C -0.17 -3.13 8.84 36.01 0.32 -2.81 16 26 H 0.21 2.35 7.80 -54.10 -0.42 1.93 16 27 H 0.09 1.62 7.30 -51.93 -0.38 1.24 16 28 H 0.10 1.64 8.13 -51.93 -0.42 1.22 16 29 H 0.28 7.14 7.56 -40.82 -0.31 6.83 16 30 H 0.17 4.08 5.32 -52.49 -0.28 3.81 16 31 H 0.41 3.56 9.11 45.56 0.42 3.97 16 32 H 0.13 1.87 7.61 -52.49 -0.40 1.47 16 33 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.58 6.24 -51.93 -0.32 1.25 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.11 2.28 4.47 -51.93 -0.23 2.05 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -31.32 314.33 -7.14 -38.46 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -2.49 Total: 10.97 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.82 Total: -22.60 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.22 Total: -37.85 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -2.46 Total: -69.84 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.87 Total: 14.26 kcal Atomic # 16 Polarization: 62.32 SS G_CDS: -0.46 Total: 61.85 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.32 -7.14 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382947389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.359 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds