Wall clock time and date at job start Fri Apr 10 2020 18:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46911 * 305.36516 * 3 2 1 5 5 C 1.36936 * 119.99896 * 77.84660 * 4 3 2 6 6 H 1.07997 * 120.00329 * 354.89513 * 5 4 3 7 7 C 1.38817 * 119.99910 * 174.89504 * 5 4 3 8 8 N 1.31625 * 119.99760 * 315.29265 * 7 5 4 9 9 Si 1.86797 * 120.00053 * 135.29751 * 7 5 4 10 10 H 1.48498 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47124 * 119.99915 * 9 7 5 12 12 H 1.48500 * 109.47325 * 239.99695 * 9 7 5 13 13 S 1.65602 * 120.00084 * 257.56912 * 4 3 2 14 14 O 1.42106 * 106.40142 * 248.68845 * 13 4 3 15 15 O 1.42102 * 106.40107 * 21.60694 * 13 4 3 16 16 C 1.76200 * 107.21989 * 135.14838 * 13 4 3 17 17 C 1.37964 * 119.92096 * 112.21326 * 16 13 4 18 18 C 1.39612 * 119.84265 * 179.77393 * 17 16 13 19 19 C 1.47724 * 120.14891 * 180.23080 * 18 17 16 20 20 O 1.21471 * 120.00481 * 0.27047 * 19 18 17 21 21 O 1.34713 * 120.00301 * 180.27219 * 19 18 17 22 22 C 1.39652 * 119.70367 * 0.50158 * 18 17 16 23 23 C 1.37923 * 119.84201 * 359.74830 * 22 18 17 24 24 C 1.38340 * 119.92664 * 292.48874 * 16 13 4 25 25 C 1.50705 * 119.84556 * 0.02562 * 24 16 13 26 26 H 4.40635 * 5.51399 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46773 * 185.36782 * 3 2 1 28 28 H 1.09001 * 109.47023 * 65.36882 * 3 2 1 29 29 H 0.97004 * 119.99767 * 185.31045 * 8 7 5 30 30 H 1.07998 * 120.08232 * 0.02562 * 17 16 13 31 31 H 0.96700 * 117.00561 * 179.97438 * 21 19 18 32 32 H 1.07995 * 120.07927 * 179.72817 * 22 18 17 33 33 H 1.08001 * 119.92098 * 179.97438 * 23 22 18 34 34 H 1.09003 * 109.47355 * 92.14665 * 25 24 16 35 35 H 1.08995 * 109.46893 * 212.14615 * 25 24 16 36 36 H 1.09000 * 109.47174 * 332.14681 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.7985 1.1263 5 6 3.1280 -2.1657 1.0496 6 1 2.6874 -2.6565 0.1944 7 6 3.6878 -2.9209 2.0710 8 7 4.8548 -2.5817 2.5767 9 14 2.7850 -4.4185 2.7279 10 1 1.5035 -4.5843 1.9962 11 1 3.6251 -5.6275 2.5338 12 1 2.5089 -4.2348 4.1754 13 16 3.7013 -0.0485 2.4897 14 8 5.1009 -0.2916 2.5290 15 8 3.1387 1.2564 2.4930 16 6 3.0107 -0.8916 3.8742 17 6 3.8269 -1.6251 4.7104 18 6 3.2787 -2.2886 5.8097 19 6 4.1471 -3.0717 6.7124 20 8 5.3418 -3.1354 6.5019 21 8 3.6142 -3.7153 7.7691 22 6 1.9049 -2.2134 6.0488 23 6 1.0999 -1.4808 5.2018 24 6 1.6506 -0.8213 4.1170 25 6 0.7645 -0.0236 3.1951 26 1 -1.0499 -0.0003 0.0001 27 1 3.0088 1.0240 0.0961 28 1 3.0095 -0.4275 -0.9342 29 1 5.2819 -3.1513 3.2355 30 1 4.8880 -1.6825 4.5175 31 1 4.2221 -4.2151 8.3310 32 1 1.4738 -2.7279 6.8949 33 1 0.0372 -1.4220 5.3853 34 1 0.3734 -0.6749 2.4135 35 1 -0.0636 0.3996 3.7635 36 1 1.3429 0.7813 2.7417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382947389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:08 Heat of formation + Delta-G solvation = -55.961575 kcal Electronic energy + Delta-G solvation = -26742.904630 eV Core-core repulsion = 22901.044291 eV Total energy + Delta-G solvation = -3841.860339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.071 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.50932 -39.90256 -37.86146 -37.77507 -37.16463 -36.19430 -34.69169 -33.95457 -32.93557 -31.84944 -28.71630 -28.37780 -25.48898 -24.61733 -24.02079 -22.07867 -20.97773 -19.86386 -19.06594 -18.86116 -18.26211 -17.53540 -17.10588 -16.81286 -16.75906 -16.43107 -16.14426 -15.81943 -15.27922 -15.08992 -14.93679 -14.70173 -14.31605 -14.19672 -14.02202 -13.53086 -13.28318 -13.18680 -12.97514 -12.75326 -12.65536 -12.48744 -12.38831 -12.10669 -11.93542 -11.87184 -11.78933 -11.52534 -11.18447 -11.01529 -10.78829 -10.43748 -9.87703 -9.71341 -8.42043 -5.66594 -0.42147 -0.06955 0.22405 1.30641 1.37235 1.45272 1.52100 1.93564 1.96629 2.15148 2.29712 2.51600 2.75011 2.83743 3.23899 3.71491 3.75996 3.83901 4.00500 4.10189 4.18905 4.40016 4.58186 4.60009 4.75594 4.77777 4.83151 4.86730 5.12499 5.14353 5.20018 5.29340 5.31004 5.44036 5.48467 5.56720 5.83711 6.22068 6.88537 6.89890 6.94604 7.27758 8.44604 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.006881 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.044310 B = 4068.262195 C = 4208.588237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.220 4.220 3 C 0.220 3.780 4 N -0.841 5.841 5 C -0.287 4.287 6 H 0.108 0.892 7 C -0.014 4.014 8 N -0.798 5.798 9 Si 0.904 3.096 10 H -0.253 1.253 11 H -0.292 1.292 12 H -0.255 1.255 13 S 2.622 3.378 14 O -0.966 6.966 15 O -1.033 7.033 16 C -0.667 4.667 17 C 0.046 3.954 18 C -0.195 4.195 19 C 0.532 3.468 20 O -0.548 6.548 21 O -0.497 6.497 22 C -0.013 4.013 23 C -0.165 4.165 24 C 0.044 3.956 25 C -0.173 4.173 26 H 0.250 0.750 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.274 0.726 30 H 0.134 0.866 31 H 0.433 0.567 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 -0.522 4.875 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.222 4.222 3 C 0.094 3.906 4 N -0.669 5.669 5 C -0.425 4.425 6 H 0.126 0.874 7 C -0.223 4.223 8 N -0.437 5.437 9 Si 0.728 3.272 10 H -0.177 1.177 11 H -0.219 1.219 12 H -0.179 1.179 13 S 2.720 3.280 14 O -0.955 6.955 15 O -1.022 7.022 16 C -0.750 4.750 17 C 0.025 3.975 18 C -0.198 4.198 19 C 0.379 3.621 20 O -0.441 6.441 21 O -0.311 6.311 22 C -0.031 4.031 23 C -0.183 4.183 24 C 0.042 3.958 25 C -0.229 4.229 26 H 0.266 0.734 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.295 0.705 32 H 0.188 0.812 33 H 0.193 0.807 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.787 0.521 4.862 11.844 hybrid contribution 0.329 -1.768 0.944 2.031 sum -10.458 -1.247 5.807 12.026 Atomic orbital electron populations 1.25548 0.96394 0.99974 0.98989 1.24034 0.95531 1.01031 1.01603 1.18338 0.84943 0.95669 0.91621 1.53437 1.76731 1.13826 1.22929 1.19106 1.36520 0.79681 1.07224 0.87431 1.25737 0.95345 1.02193 0.99030 1.70935 1.09091 1.38184 1.25500 0.86257 0.80709 0.79330 0.80944 1.17665 1.21881 1.17889 1.06490 0.75389 0.72597 0.73481 1.93515 1.31456 1.84816 1.85736 1.93269 1.79264 1.42177 1.87463 1.31074 1.03793 1.17479 1.22690 1.21128 1.00778 0.86974 0.88577 1.19231 0.95262 1.06647 0.98636 1.20853 0.85736 0.76252 0.79295 1.90885 1.18083 1.61815 1.73292 1.84476 1.46308 1.62300 1.38023 1.21884 0.90786 0.92624 0.97804 1.21508 1.02022 0.99734 0.95049 1.20189 0.91454 0.90550 0.93586 1.21810 1.00583 1.00873 0.99591 0.73377 0.89106 0.86872 0.91453 0.84865 0.70548 0.81173 0.80731 0.88750 0.87403 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.17 17.90 74.32 1.33 -3.84 16 2 C -0.22 -7.41 12.24 31.12 0.38 -7.02 16 3 C 0.22 8.29 5.93 84.57 0.50 8.79 16 4 N -0.84 -38.29 2.93 -352.52 -1.03 -39.33 16 5 C -0.29 -13.65 9.33 84.03 0.78 -12.87 16 6 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 7 C -0.01 -0.70 3.01 84.86 0.26 -0.44 16 8 N -0.80 -43.35 7.35 21.65 0.16 -43.19 16 9 Si 0.90 39.07 28.64 68.60 1.96 41.04 16 10 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.25 -10.63 5.81 99.48 0.58 -10.05 16 13 S 2.62 129.71 4.32 -56.49 -0.24 129.46 16 14 O -0.97 -55.58 14.34 -128.00 -1.84 -57.41 16 15 O -1.03 -50.44 13.94 -128.00 -1.78 -52.23 16 16 C -0.67 -30.05 3.99 22.23 0.09 -29.96 16 17 C 0.05 2.10 5.94 22.54 0.13 2.23 16 18 C -0.20 -7.55 4.82 -20.10 -0.10 -7.65 16 19 C 0.53 19.16 8.27 70.33 0.58 19.74 16 20 O -0.55 -23.56 17.13 19.93 0.34 -23.22 16 21 O -0.50 -12.13 12.68 -56.23 -0.71 -12.85 16 22 C -0.01 -0.40 9.39 22.54 0.21 -0.19 16 23 C -0.16 -4.91 9.69 22.23 0.22 -4.69 16 24 C 0.04 1.63 5.88 -19.80 -0.12 1.51 16 25 C -0.17 -5.66 8.84 71.24 0.63 -5.03 16 26 H 0.25 4.26 7.80 -4.42 -0.03 4.23 16 27 H 0.09 3.32 7.30 -2.39 -0.02 3.30 16 28 H 0.11 3.80 8.13 -2.39 -0.02 3.78 16 29 H 0.27 14.82 7.56 -92.71 -0.70 14.11 16 30 H 0.13 7.03 5.32 -2.91 -0.02 7.01 16 31 H 0.43 6.12 9.11 -74.06 -0.67 5.45 16 32 H 0.17 3.83 7.61 -2.91 -0.02 3.81 16 33 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.09 3.00 6.24 -2.39 -0.01 2.99 16 35 H 0.11 2.63 8.10 -2.39 -0.02 2.62 16 36 H 0.09 3.46 4.47 -2.39 -0.01 3.45 16 Total: -1.00 -72.16 314.33 2.17 -69.99 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.42 Total: 27.13 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 4.90 Total: -39.40 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -0.87 Total: -82.52 kcal Atomic # 8 Polarization: -141.71 SS G_CDS: -3.99 Total: -145.70 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.96 Total: 41.04 kcal Atomic # 16 Polarization: 129.71 SS G_CDS: -0.24 Total: 129.46 kcal Total: -72.16 2.17 -69.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382947389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.029 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds