Wall clock time and date at job start Fri Apr 10 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00058 * 2 1 4 4 C 1.50699 * 109.46744 * 274.99530 * 3 2 1 5 5 H 1.08001 * 120.00377 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99764 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00096 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99761 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46921 * 89.99918 * 8 6 4 10 10 H 1.48495 * 109.47019 * 209.99520 * 8 6 4 11 11 H 1.48500 * 109.47143 * 329.99824 * 8 6 4 12 12 S 1.65602 * 120.00035 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40161 * 148.41539 * 12 2 1 14 14 O 1.42098 * 106.40184 * 15.49849 * 12 2 1 15 15 N 1.65595 * 107.22178 * 261.95932 * 12 2 1 16 16 C 1.46383 * 119.64600 * 269.30684 * 15 12 2 17 17 C 1.53241 * 109.48695 * 244.80905 * 16 15 12 18 18 S 1.81741 * 108.79662 * 302.34195 * 17 16 15 19 19 C 1.81738 * 102.30852 * 54.54128 * 18 17 16 20 20 C 1.46377 * 119.65114 * 89.03106 * 15 12 2 21 21 H 1.08996 * 109.46719 * 235.19628 * 20 15 12 22 22 C 1.50698 * 109.46582 * 355.18720 * 20 15 12 23 23 N 1.34775 * 120.00168 * 271.24207 * 22 20 15 24 24 O 1.21281 * 120.00386 * 91.24054 * 22 20 15 25 25 H 1.08996 * 109.47429 * 275.40375 * 1 2 3 26 26 H 1.09000 * 109.47002 * 35.41274 * 1 2 3 27 27 H 1.09004 * 109.47174 * 155.40453 * 1 2 3 28 28 H 1.08997 * 109.47070 * 34.99557 * 3 2 1 29 29 H 1.09002 * 109.47090 * 154.99907 * 3 2 1 30 30 H 0.96996 * 120.00077 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46529 * 4.80928 * 16 15 12 32 32 H 1.08996 * 109.47285 * 124.80522 * 16 15 12 33 33 H 1.09000 * 109.58224 * 62.13478 * 17 16 15 34 34 H 1.08999 * 109.58123 * 182.54809 * 17 16 15 35 35 H 1.09005 * 109.58410 * 65.25477 * 19 18 17 36 36 H 1.09002 * 109.58323 * 185.66583 * 19 18 17 37 37 H 0.97006 * 119.99929 * 4.84271 * 23 22 20 38 38 H 0.97001 * 120.00201 * 184.83590 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5034 3.6468 -0.6708 8 14 3.1798 3.5657 -3.4211 9 1 2.0196 4.4265 -3.7645 10 1 4.4333 4.3522 -3.5442 11 1 3.2289 2.4076 -4.3494 12 16 2.2930 -1.4341 0.0006 13 8 3.4992 -1.2013 -0.7134 14 8 1.3560 -2.4386 -0.3632 15 7 2.7297 -1.7474 1.5669 16 6 4.0184 -1.2677 2.0691 17 6 4.9107 -2.4650 2.4131 18 16 4.0552 -3.5003 3.6376 19 6 2.4653 -3.8314 2.8218 20 6 1.8205 -2.4958 2.4364 21 1 1.6199 -1.9159 3.3372 22 6 0.5274 -2.7543 1.7070 23 7 -0.4742 -1.8549 1.7717 24 8 0.3880 -3.7718 1.0618 25 1 -0.3634 0.0968 1.0230 26 1 -0.3633 0.8375 -0.5955 27 1 -0.3634 -0.9345 -0.4277 28 1 1.6501 2.0043 0.5894 29 1 3.1858 1.1177 0.4343 30 1 3.9669 4.4804 -0.8473 31 1 4.5033 -0.6612 1.3041 32 1 3.8584 -0.6652 2.9632 33 1 5.1031 -3.0480 1.5124 34 1 5.8535 -2.1103 2.8295 35 1 2.6320 -4.4288 1.9254 36 1 1.8091 -4.3701 3.5055 37 1 -0.3387 -1.0100 2.2287 38 1 -1.3307 -2.0524 1.3613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408102189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:13 Heat of formation + Delta-G solvation = -75.740366 kcal Electronic energy + Delta-G solvation = -25611.949240 eV Core-core repulsion = 21936.967931 eV Total energy + Delta-G solvation = -3674.981309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.081 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.99629 -37.14575 -36.39103 -35.72639 -35.28454 -33.64168 -32.47485 -31.97296 -29.45979 -27.86479 -25.25828 -24.84825 -22.81587 -22.37111 -20.92513 -19.06268 -17.83478 -17.19388 -17.01251 -16.59524 -16.39089 -16.18033 -15.83781 -15.14561 -14.80863 -14.42102 -14.23359 -14.02807 -13.74148 -13.54589 -13.42656 -13.12382 -12.78230 -12.38858 -12.22076 -11.86484 -11.74145 -11.55105 -11.40289 -11.25865 -11.15986 -11.06854 -10.79440 -10.61249 -10.13022 -10.08634 -9.87987 -9.72468 -9.42023 -9.29768 -8.53205 -8.18305 -7.80462 -6.15490 -4.19406 0.94394 1.61005 2.30296 2.49298 3.26156 3.31616 3.33134 3.39420 3.45775 3.95507 4.35508 4.38141 4.61134 4.69448 4.86759 4.90276 4.96494 5.19169 5.22268 5.27945 5.46221 5.56594 5.66734 5.76956 5.80446 5.88637 6.16388 6.33744 6.49454 6.86238 7.05861 7.24829 7.27155 7.46105 7.82407 8.09711 8.33944 8.83233 9.46577 10.92931 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.005283 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.601089 B = 5298.399264 C = 6114.150565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.992 5.992 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 S 2.756 3.244 13 O -0.956 6.956 14 O -0.961 6.961 15 N -1.004 6.004 16 C 0.118 3.882 17 C -0.099 4.099 18 S -0.253 6.253 19 C -0.082 4.082 20 C 0.140 3.860 21 H 0.105 0.895 22 C 0.501 3.499 23 N -0.856 5.856 24 O -0.480 6.480 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.402 0.598 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -8.897 11.248 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.835 5.835 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.766 3.234 13 O -0.939 6.939 14 O -0.944 6.944 15 N -0.843 5.843 16 C -0.009 4.009 17 C -0.249 4.249 18 S -0.025 6.025 19 C -0.232 4.232 20 C 0.027 3.973 21 H 0.123 0.877 22 C 0.280 3.720 23 N -0.426 5.426 24 O -0.351 6.351 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.234 0.766 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.355 -10.370 11.176 15.611 hybrid contribution -0.538 1.569 -1.664 2.350 sum -3.894 -8.801 9.511 13.531 Atomic orbital electron populations 1.21682 0.80172 1.03247 1.00205 1.57691 1.14286 1.23276 1.88254 1.19048 0.90639 0.78882 0.97813 1.21463 1.36200 1.06287 0.92845 0.92199 1.24917 0.95016 0.96446 0.97538 1.69900 1.37313 1.15329 1.30958 0.86515 0.77599 0.78864 0.84638 1.20567 1.20987 1.19687 1.02968 0.73988 0.73398 0.73078 1.93627 1.46740 1.85585 1.67990 1.93751 1.62894 1.56809 1.80951 1.58425 1.25794 1.67985 1.32111 1.21558 0.81860 0.94946 1.02486 1.23892 1.01197 0.98948 1.00822 1.86697 1.17225 1.67988 1.30595 1.23645 0.96132 0.98703 1.04762 1.21033 0.87560 0.93571 0.95120 0.87747 1.20104 0.85611 0.85309 0.80961 1.44317 1.16345 1.20869 1.61117 1.90757 1.80725 1.27336 1.36290 0.94046 0.90850 0.91039 0.94582 0.94985 0.92616 0.86879 0.89445 0.89125 0.86283 0.88041 0.86607 0.76592 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 8.84 59.85 0.53 1.96 16 2 N -0.99 -18.90 3.23 -123.06 -0.40 -19.30 16 3 C 0.26 5.98 5.10 -5.19 -0.03 5.95 16 4 C -0.53 -14.25 9.38 -34.44 -0.32 -14.58 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -24.98 13.29 55.43 0.74 -24.24 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 S 2.76 52.99 5.55 -107.50 -0.60 52.39 16 13 O -0.96 -22.26 15.97 -57.18 -0.91 -23.18 16 14 O -0.96 -19.67 11.33 -67.30 -0.76 -20.43 16 15 N -1.00 -14.71 3.15 -108.44 -0.34 -15.05 16 16 C 0.12 1.56 6.18 -3.98 -0.02 1.54 16 17 C -0.10 -1.16 6.67 37.28 0.25 -0.91 16 18 S -0.25 -2.96 22.29 -107.50 -2.40 -5.36 16 19 C -0.08 -0.99 5.57 37.28 0.21 -0.78 16 20 C 0.14 1.72 3.13 -69.03 -0.22 1.51 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 C 0.50 6.92 4.42 -10.99 -0.05 6.88 16 23 N -0.86 -8.64 5.66 31.22 0.18 -8.46 16 24 O -0.48 -8.63 14.73 -19.32 -0.28 -8.91 16 25 H 0.04 0.46 5.39 -51.93 -0.28 0.18 16 26 H 0.07 1.18 8.11 -51.93 -0.42 0.75 16 27 H 0.07 1.08 6.24 -51.93 -0.32 0.75 16 28 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 29 H 0.03 0.78 7.75 -51.93 -0.40 0.37 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.11 1.71 6.86 -51.93 -0.36 1.35 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.42 7.79 -51.93 -0.40 1.02 16 36 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.40 3.15 6.90 -40.82 -0.28 2.86 16 38 H 0.41 3.63 8.88 -40.82 -0.36 3.27 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -34.87 323.67 -9.59 -44.46 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.91 Total: 3.72 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 0.25 Total: 3.19 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: 0.17 Total: -67.05 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -1.96 Total: -52.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 50.03 SS G_CDS: -2.99 Total: 47.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.87 -9.59 -44.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408102189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.281 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds