Wall clock time and date at job start Fri Apr 10 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00058 * 2 1 4 4 C 1.50699 * 109.46744 * 274.99530 * 3 2 1 5 5 H 1.08001 * 120.00377 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99764 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00096 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99761 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46921 * 89.99918 * 8 6 4 10 10 H 1.48495 * 109.47019 * 209.99520 * 8 6 4 11 11 H 1.48500 * 109.47143 * 329.99824 * 8 6 4 12 12 S 1.65602 * 120.00035 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40161 * 148.41539 * 12 2 1 14 14 O 1.42098 * 106.40184 * 15.49849 * 12 2 1 15 15 N 1.65595 * 107.22178 * 261.95932 * 12 2 1 16 16 C 1.46383 * 119.64600 * 269.30684 * 15 12 2 17 17 C 1.53241 * 109.48695 * 244.80905 * 16 15 12 18 18 S 1.81741 * 108.79662 * 302.34195 * 17 16 15 19 19 C 1.81738 * 102.30852 * 54.54128 * 18 17 16 20 20 C 1.46377 * 119.65114 * 89.03106 * 15 12 2 21 21 H 1.08996 * 109.46719 * 235.19628 * 20 15 12 22 22 C 1.50698 * 109.46582 * 355.18720 * 20 15 12 23 23 N 1.34775 * 120.00168 * 271.24207 * 22 20 15 24 24 O 1.21281 * 120.00386 * 91.24054 * 22 20 15 25 25 H 1.08996 * 109.47429 * 275.40375 * 1 2 3 26 26 H 1.09000 * 109.47002 * 35.41274 * 1 2 3 27 27 H 1.09004 * 109.47174 * 155.40453 * 1 2 3 28 28 H 1.08997 * 109.47070 * 34.99557 * 3 2 1 29 29 H 1.09002 * 109.47090 * 154.99907 * 3 2 1 30 30 H 0.96996 * 120.00077 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46529 * 4.80928 * 16 15 12 32 32 H 1.08996 * 109.47285 * 124.80522 * 16 15 12 33 33 H 1.09000 * 109.58224 * 62.13478 * 17 16 15 34 34 H 1.08999 * 109.58123 * 182.54809 * 17 16 15 35 35 H 1.09005 * 109.58410 * 65.25477 * 19 18 17 36 36 H 1.09002 * 109.58323 * 185.66583 * 19 18 17 37 37 H 0.97006 * 119.99929 * 4.84271 * 23 22 20 38 38 H 0.97001 * 120.00201 * 184.83590 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5034 3.6468 -0.6708 8 14 3.1798 3.5657 -3.4211 9 1 2.0196 4.4265 -3.7645 10 1 4.4333 4.3522 -3.5442 11 1 3.2289 2.4076 -4.3494 12 16 2.2930 -1.4341 0.0006 13 8 3.4992 -1.2013 -0.7134 14 8 1.3560 -2.4386 -0.3632 15 7 2.7297 -1.7474 1.5669 16 6 4.0184 -1.2677 2.0691 17 6 4.9107 -2.4650 2.4131 18 16 4.0552 -3.5003 3.6376 19 6 2.4653 -3.8314 2.8218 20 6 1.8205 -2.4958 2.4364 21 1 1.6199 -1.9159 3.3372 22 6 0.5274 -2.7543 1.7070 23 7 -0.4742 -1.8549 1.7717 24 8 0.3880 -3.7718 1.0618 25 1 -0.3634 0.0968 1.0230 26 1 -0.3633 0.8375 -0.5955 27 1 -0.3634 -0.9345 -0.4277 28 1 1.6501 2.0043 0.5894 29 1 3.1858 1.1177 0.4343 30 1 3.9669 4.4804 -0.8473 31 1 4.5033 -0.6612 1.3041 32 1 3.8584 -0.6652 2.9632 33 1 5.1031 -3.0480 1.5124 34 1 5.8535 -2.1103 2.8295 35 1 2.6320 -4.4288 1.9254 36 1 1.8091 -4.3701 3.5055 37 1 -0.3387 -1.0100 2.2287 38 1 -1.3307 -2.0524 1.3613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408102189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:13 Heat of formation + Delta-G solvation = -103.042099 kcal Electronic energy + Delta-G solvation = -25613.133132 eV Core-core repulsion = 21936.967931 eV Total energy + Delta-G solvation = -3676.165201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10725 -38.51871 -37.74672 -37.29786 -36.91415 -34.86454 -34.30277 -32.97656 -30.53747 -29.63108 -26.82958 -25.89662 -24.23731 -23.83686 -22.05672 -20.26125 -19.31263 -18.52892 -18.46521 -18.13194 -17.66393 -17.34791 -16.96020 -16.72468 -16.14926 -15.85861 -15.33939 -15.14935 -15.11211 -14.88735 -14.78913 -14.27059 -14.05339 -14.01695 -13.77838 -13.39917 -13.07562 -12.95708 -12.93619 -12.77919 -12.57303 -12.50661 -12.45876 -12.30972 -12.00166 -11.76408 -11.16494 -10.80243 -10.61249 -10.50305 -10.37272 -9.76890 -8.74161 -8.21512 -6.31637 -0.53296 0.66723 1.33876 1.37109 1.37526 1.40298 1.50037 2.03309 2.36718 2.41966 2.57628 3.09798 3.22806 3.39565 3.60317 3.86794 3.96453 4.00617 4.09041 4.24435 4.33196 4.47119 4.66689 4.69631 4.74020 4.79477 4.87270 5.06612 5.17108 5.28818 5.48030 5.68824 5.91443 6.00866 6.10790 6.38008 6.75366 7.36980 7.38503 8.85308 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.005283 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.601089 B = 5298.399264 C = 6114.150565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.995 5.995 3 C 0.273 3.727 4 C -0.549 4.549 5 H 0.044 0.956 6 C 0.019 3.981 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.281 1.281 12 S 2.768 3.232 13 O -1.006 7.006 14 O -0.976 6.976 15 N -0.996 5.996 16 C 0.114 3.886 17 C -0.101 4.101 18 S -0.234 6.234 19 C -0.085 4.085 20 C 0.137 3.863 21 H 0.146 0.854 22 C 0.497 3.503 23 N -0.838 5.838 24 O -0.528 6.528 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.416 0.584 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 -8.489 12.995 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.837 5.837 3 C 0.149 3.851 4 C -0.588 4.588 5 H 0.062 0.938 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.206 1.206 12 S 2.778 3.222 13 O -0.989 6.989 14 O -0.959 6.959 15 N -0.838 5.838 16 C -0.012 4.012 17 C -0.251 4.251 18 S -0.006 6.006 19 C -0.235 4.235 20 C 0.026 3.974 21 H 0.163 0.837 22 C 0.276 3.724 23 N -0.409 5.409 24 O -0.402 6.402 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.250 0.750 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.081 -9.931 12.933 16.809 hybrid contribution -0.356 1.387 -2.144 2.578 sum -4.437 -8.544 10.789 14.460 Atomic orbital electron populations 1.21955 0.77990 1.02968 1.03026 1.57519 1.15688 1.21663 1.88843 1.18654 0.90543 0.80242 0.95613 1.21791 1.36229 1.06467 0.94350 0.93803 1.25592 0.94892 0.96770 1.00850 1.69959 1.37776 1.15688 1.32330 0.85724 0.78242 0.78200 0.80567 1.19069 1.20241 1.20607 1.02331 0.72922 0.73103 0.73818 1.93558 1.48826 1.86183 1.70350 1.93742 1.63147 1.57020 1.81945 1.57996 1.26764 1.68091 1.30944 1.21727 0.81110 0.95655 1.02678 1.23918 1.02141 0.98339 1.00712 1.86652 1.16723 1.67728 1.29514 1.23660 0.97056 0.98434 1.04368 1.21343 0.86390 0.94052 0.95628 0.83660 1.20387 0.86476 0.85027 0.80462 1.44188 1.15954 1.20613 1.60119 1.90744 1.81656 1.29324 1.38476 0.89469 0.91751 0.90898 0.94458 0.96233 0.92313 0.89266 0.86522 0.90650 0.83799 0.90558 0.84400 0.74966 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.49 8.84 127.77 1.13 3.62 16 2 N -0.99 -37.40 3.23 -543.24 -1.75 -39.15 16 3 C 0.27 12.64 5.10 85.63 0.44 13.08 16 4 C -0.55 -29.91 9.38 25.60 0.24 -29.67 16 5 H 0.04 2.47 7.81 -2.91 -0.02 2.44 16 6 C 0.02 1.04 5.46 84.66 0.46 1.50 16 7 N -0.92 -50.99 13.29 21.45 0.28 -50.71 16 8 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 S 2.77 106.89 5.55 -56.49 -0.31 106.58 16 13 O -1.01 -48.38 15.97 -128.00 -2.04 -50.43 16 14 O -0.98 -40.11 11.33 -118.32 -1.34 -41.45 16 15 N -1.00 -28.05 3.15 -496.99 -1.57 -29.61 16 16 C 0.11 2.88 6.18 86.48 0.53 3.42 16 17 C -0.10 -2.25 6.67 72.06 0.48 -1.76 16 18 S -0.23 -4.94 22.29 -56.49 -1.26 -6.20 16 19 C -0.08 -1.90 5.57 72.06 0.40 -1.50 16 20 C 0.14 3.07 3.13 44.35 0.14 3.21 16 21 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 22 C 0.50 12.87 4.42 87.66 0.39 13.25 16 23 N -0.84 -14.67 5.66 -173.54 -0.98 -15.65 16 24 O -0.53 -18.69 14.73 20.75 0.31 -18.38 16 25 H 0.09 1.67 5.39 -2.39 -0.01 1.66 16 26 H 0.06 1.99 8.11 -2.39 -0.02 1.98 16 27 H 0.07 2.11 6.24 -2.38 -0.01 2.09 16 28 H 0.04 1.71 8.11 -2.39 -0.02 1.70 16 29 H 0.02 0.96 7.75 -2.39 -0.02 0.94 16 30 H 0.27 14.06 8.31 -92.71 -0.77 13.28 16 31 H 0.09 2.73 6.86 -2.38 -0.02 2.71 16 32 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.14 2.44 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.12 7.79 -2.39 -0.02 2.11 16 36 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.42 4.94 6.90 -92.70 -0.64 4.30 16 38 H 0.41 6.37 8.88 -92.71 -0.82 5.55 16 Total: -1.00 -76.60 323.67 -2.79 -79.39 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.35 Total: 14.83 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 4.21 Total: 5.15 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -4.02 Total: -135.12 kcal Atomic # 8 Polarization: -107.19 SS G_CDS: -3.08 Total: -110.26 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 101.96 SS G_CDS: -1.57 Total: 100.39 kcal Total: -76.60 -2.79 -79.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408102189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.656 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds