Wall clock time and date at job start Fri Apr 10 2020 18:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46925 * 2 1 4 4 C 1.34227 * 116.99864 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99850 * 180.02562 * 4 3 2 7 7 H 1.09005 * 108.70456 * 34.12485 * 6 4 3 8 8 C 1.54564 * 108.75422 * 276.02234 * 6 4 3 9 9 S 1.84214 * 101.32878 * 215.93588 * 8 6 4 10 10 C 1.84077 * 93.90794 * 32.25709 * 9 8 6 11 11 N 1.45500 * 108.75640 * 152.38255 * 6 4 3 12 12 S 1.65603 * 122.42941 * 299.91518 * 11 6 4 13 13 O 1.42104 * 104.27602 * 20.00833 * 12 11 6 14 14 O 1.42097 * 104.27917 * 147.86885 * 12 11 6 15 15 C 1.81401 * 104.44566 * 263.93888 * 12 11 6 16 16 C 1.52999 * 109.46874 * 184.88702 * 15 12 11 17 17 C 1.50695 * 109.47415 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00601 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00294 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47079 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47351 * 119.99937 * 21 19 17 24 24 H 1.48500 * 109.47223 * 239.99803 * 21 19 17 25 25 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47339 * 300.00032 * 1 2 3 27 27 H 1.09005 * 109.47437 * 60.00200 * 1 2 3 28 28 H 1.08994 * 109.47155 * 120.00179 * 2 1 3 29 29 H 1.09000 * 109.46842 * 239.99788 * 2 1 3 30 30 H 1.09004 * 111.05256 * 333.95008 * 8 6 4 31 31 H 1.09003 * 111.05022 * 97.92116 * 8 6 4 32 32 H 1.08994 * 110.77427 * 208.27627 * 10 9 8 33 33 H 1.09000 * 110.93963 * 84.92740 * 10 9 8 34 34 H 1.09000 * 109.47138 * 304.88929 * 15 12 11 35 35 H 1.08999 * 109.47159 * 64.89037 * 15 12 11 36 36 H 1.09000 * 109.47424 * 300.00052 * 16 15 12 37 37 H 1.09006 * 109.46818 * 59.99891 * 16 15 12 38 38 H 0.96996 * 120.00077 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2647 3.5868 0.5799 8 6 3.9680 3.4562 -1.4552 9 16 5.5283 4.4354 -1.4397 10 6 6.3526 3.3384 -0.2127 11 7 5.2278 2.9028 0.6380 12 16 5.4385 2.4098 2.2049 13 8 4.2706 1.6538 2.4944 14 8 6.7239 1.8040 2.2118 15 6 5.4549 3.9487 3.1652 16 6 5.7668 3.6328 4.6294 17 6 5.7811 4.9111 5.4271 18 1 5.5867 5.8546 4.9388 19 6 6.0424 4.8765 6.7804 20 7 6.2786 3.7276 7.3753 21 14 6.0593 6.4611 7.7694 22 1 5.7654 7.6075 6.8724 23 1 5.0288 6.3898 8.8363 24 1 7.3978 6.6457 8.3856 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 4.0311 2.6301 -2.1635 31 1 3.1092 4.0913 -1.6726 32 1 7.0864 3.8941 0.3711 33 1 6.8186 2.4847 -0.7047 34 1 6.2182 4.6173 2.7671 35 1 4.4792 4.4298 3.0972 36 1 5.0036 2.9642 5.0274 37 1 6.7426 3.1516 4.6973 38 1 6.4628 3.7032 8.3273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439188735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:44 Heat of formation + Delta-G solvation = -147.819276 kcal Electronic energy + Delta-G solvation = -24043.157692 eV Core-core repulsion = 20332.758056 eV Total energy + Delta-G solvation = -3710.399636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.074 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72504 -37.66831 -36.81634 -36.19290 -35.59912 -33.97239 -32.12169 -31.25555 -31.04245 -27.38811 -25.69923 -24.78241 -22.93841 -21.78581 -21.13061 -19.01839 -18.20883 -17.98033 -17.27379 -16.70013 -16.43119 -16.30918 -15.67896 -15.41957 -14.84892 -14.63357 -14.50106 -14.18727 -13.79306 -13.53781 -13.49951 -12.99401 -12.66022 -12.57750 -12.43895 -12.18033 -11.87757 -11.84998 -11.73276 -11.71702 -11.67360 -11.21574 -11.13564 -11.03510 -10.61356 -10.47849 -10.45878 -10.33006 -9.86858 -9.53138 -9.10763 -8.55339 -8.16306 -6.17028 -4.23239 0.40892 1.32147 1.62132 2.08881 2.35162 2.75446 3.23113 3.30601 3.33986 3.80190 4.13679 4.32076 4.33584 4.38767 4.54168 4.73013 4.79250 4.84952 4.90433 5.03072 5.13323 5.15664 5.18249 5.22520 5.41520 5.50591 5.63537 5.65278 5.79023 5.96574 6.34364 6.36427 7.21659 7.26959 7.64083 7.75934 8.10591 8.80436 9.42119 10.94003 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.004055 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.024217 B = 6903.389347 C = 7881.282748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.458 3.542 5 O -0.489 6.489 6 C 0.159 3.841 7 H 0.124 0.876 8 C -0.059 4.059 9 S -0.250 6.250 10 C 0.174 3.826 11 N -0.993 5.993 12 S 2.587 3.413 13 O -0.952 6.952 14 O -0.945 6.945 15 C -0.581 4.581 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.064 0.936 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -1.418 -19.461 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.268 6.268 4 C 0.296 3.704 5 O -0.374 6.374 6 C 0.048 3.952 7 H 0.142 0.858 8 C -0.209 4.209 9 S -0.025 6.025 10 C -0.062 4.062 11 N -0.829 5.829 12 S 2.687 3.313 13 O -0.943 6.943 14 O -0.936 6.936 15 C -0.715 4.715 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.846 -1.752 -19.636 21.217 hybrid contribution -0.287 0.197 1.236 1.284 sum -8.133 -1.555 -18.399 20.177 Atomic orbital electron populations 1.21808 0.92534 1.02961 1.03555 1.23067 0.95289 0.79952 1.02893 1.86425 1.23712 1.32798 1.83887 1.23720 0.81328 0.92450 0.72866 1.90675 1.60412 1.42441 1.43898 1.20545 0.85927 0.91872 0.96832 0.85849 1.24404 0.99423 1.02192 0.94900 1.88292 1.16080 1.39924 1.58179 1.23984 0.90097 0.98954 0.93131 1.58830 1.09956 1.83873 1.30210 1.06216 0.74607 0.78323 0.72203 1.93546 1.49906 1.68360 1.82456 1.93562 1.41335 1.74251 1.84427 1.30462 1.10620 1.17745 1.12700 1.19007 0.98388 0.99481 0.84263 1.21014 1.49613 0.92367 0.93016 0.91808 1.25073 0.94826 0.96688 0.97865 1.69964 1.47082 1.24725 1.10995 0.86394 0.77836 0.82972 0.79990 1.19549 1.20754 1.20748 0.90258 0.91164 0.91619 0.90603 0.91404 0.87712 0.84651 0.85948 0.87801 0.85829 0.85751 0.94892 0.94603 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.35 -4.54 10.22 -39.25 -0.40 -4.94 16 4 C 0.46 6.68 5.11 36.00 0.18 6.87 16 5 O -0.49 -8.71 15.48 -24.48 -0.38 -9.09 16 6 C 0.16 1.90 3.11 -68.80 -0.21 1.69 16 7 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.06 -0.50 7.03 37.98 0.27 -0.24 16 9 S -0.25 -2.54 23.43 -107.50 -2.52 -5.06 16 10 C 0.17 2.05 7.38 60.45 0.45 2.49 16 11 N -0.99 -13.99 2.86 -110.14 -0.31 -14.31 16 12 S 2.59 47.78 5.24 -107.50 -0.56 47.21 16 13 O -0.95 -19.87 15.16 -64.50 -0.98 -20.85 16 14 O -0.95 -20.15 17.53 -57.54 -1.01 -21.16 16 15 C -0.58 -10.86 6.12 37.16 0.23 -10.63 16 16 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 18 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.10 0.82 7.85 -51.93 -0.41 0.42 16 31 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -36.16 348.57 -9.67 -45.83 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.44 Total: -1.26 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 0.97 Total: -12.06 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.42 Total: -39.76 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -2.77 Total: -56.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 45.23 SS G_CDS: -3.08 Total: 42.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.16 -9.67 -45.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439188735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.991 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds