Wall clock time and date at job start Fri Apr 10 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46925 * 2 1 4 4 C 1.34227 * 116.99864 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99850 * 180.02562 * 4 3 2 7 7 H 1.09005 * 108.70456 * 34.12485 * 6 4 3 8 8 C 1.54564 * 108.75422 * 276.02234 * 6 4 3 9 9 S 1.84214 * 101.32878 * 215.93588 * 8 6 4 10 10 C 1.84077 * 93.90794 * 32.25709 * 9 8 6 11 11 N 1.45500 * 108.75640 * 152.38255 * 6 4 3 12 12 S 1.65603 * 122.42941 * 299.91518 * 11 6 4 13 13 O 1.42104 * 104.27602 * 20.00833 * 12 11 6 14 14 O 1.42097 * 104.27917 * 147.86885 * 12 11 6 15 15 C 1.81401 * 104.44566 * 263.93888 * 12 11 6 16 16 C 1.52999 * 109.46874 * 184.88702 * 15 12 11 17 17 C 1.50695 * 109.47415 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00601 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00294 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47079 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47351 * 119.99937 * 21 19 17 24 24 H 1.48500 * 109.47223 * 239.99803 * 21 19 17 25 25 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47339 * 300.00032 * 1 2 3 27 27 H 1.09005 * 109.47437 * 60.00200 * 1 2 3 28 28 H 1.08994 * 109.47155 * 120.00179 * 2 1 3 29 29 H 1.09000 * 109.46842 * 239.99788 * 2 1 3 30 30 H 1.09004 * 111.05256 * 333.95008 * 8 6 4 31 31 H 1.09003 * 111.05022 * 97.92116 * 8 6 4 32 32 H 1.08994 * 110.77427 * 208.27627 * 10 9 8 33 33 H 1.09000 * 110.93963 * 84.92740 * 10 9 8 34 34 H 1.09000 * 109.47138 * 304.88929 * 15 12 11 35 35 H 1.08999 * 109.47159 * 64.89037 * 15 12 11 36 36 H 1.09000 * 109.47424 * 300.00052 * 16 15 12 37 37 H 1.09006 * 109.46818 * 59.99891 * 16 15 12 38 38 H 0.96996 * 120.00077 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2647 3.5868 0.5799 8 6 3.9680 3.4562 -1.4552 9 16 5.5283 4.4354 -1.4397 10 6 6.3526 3.3384 -0.2127 11 7 5.2278 2.9028 0.6380 12 16 5.4385 2.4098 2.2049 13 8 4.2706 1.6538 2.4944 14 8 6.7239 1.8040 2.2118 15 6 5.4549 3.9487 3.1652 16 6 5.7668 3.6328 4.6294 17 6 5.7811 4.9111 5.4271 18 1 5.5867 5.8546 4.9388 19 6 6.0424 4.8765 6.7804 20 7 6.2786 3.7276 7.3753 21 14 6.0593 6.4611 7.7694 22 1 5.7654 7.6075 6.8724 23 1 5.0288 6.3898 8.8363 24 1 7.3978 6.6457 8.3856 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 4.0311 2.6301 -2.1635 31 1 3.1092 4.0913 -1.6726 32 1 7.0864 3.8941 0.3711 33 1 6.8186 2.4847 -0.7047 34 1 6.2182 4.6173 2.7671 35 1 4.4792 4.4298 3.0972 36 1 5.0036 2.9642 5.0274 37 1 6.7426 3.1516 4.6973 38 1 6.4628 3.7032 8.3273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439188735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:43 Heat of formation + Delta-G solvation = -173.287958 kcal Electronic energy + Delta-G solvation = -24044.262097 eV Core-core repulsion = 20332.758056 eV Total energy + Delta-G solvation = -3711.504041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80984 -38.68593 -38.37483 -37.32640 -37.18253 -35.93909 -33.18855 -32.97053 -31.88317 -28.32698 -27.64337 -25.72682 -23.93955 -23.45622 -22.27695 -20.25977 -19.47057 -19.20225 -18.61263 -18.23650 -17.58679 -17.44691 -16.91489 -16.85620 -16.53672 -15.99372 -15.47879 -15.31674 -15.03358 -14.68097 -14.55734 -14.45655 -13.78203 -13.75562 -13.46609 -13.42585 -13.33483 -13.18360 -13.10784 -12.96524 -12.87881 -12.81679 -12.55145 -12.34138 -12.30863 -12.11531 -11.77153 -11.56064 -11.31412 -11.18064 -10.66772 -10.44240 -8.93289 -8.27124 -6.41543 -1.05210 0.53313 0.75030 1.02527 1.27534 1.42540 1.42773 1.56410 1.62125 2.38010 2.71138 2.79098 3.07032 3.14674 3.45404 3.64970 3.73801 3.93331 3.98645 3.99617 4.07311 4.14720 4.29726 4.33388 4.37077 4.42904 4.68686 4.77840 4.90564 4.93768 5.12164 5.21562 5.23133 5.39500 5.67136 6.02606 6.55964 6.72581 7.29315 8.85504 Molecular weight = 323.07amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.004055 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.024217 B = 6903.389347 C = 7881.282748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.348 6.348 4 C 0.453 3.547 5 O -0.531 6.531 6 C 0.148 3.852 7 H 0.150 0.850 8 C -0.048 4.048 9 S -0.234 6.234 10 C 0.158 3.842 11 N -0.990 5.990 12 S 2.607 3.393 13 O -0.982 6.982 14 O -0.983 6.983 15 C -0.573 4.573 16 C 0.020 3.980 17 C -0.536 4.536 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.175 0.825 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.005 0.995 37 H 0.007 0.993 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 1.142 -21.275 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.293 3.707 5 O -0.420 6.420 6 C 0.038 3.962 7 H 0.167 0.833 8 C -0.198 4.198 9 S -0.009 6.009 10 C -0.077 4.077 11 N -0.827 5.827 12 S 2.707 3.293 13 O -0.973 6.973 14 O -0.973 6.973 15 C -0.706 4.706 16 C -0.019 4.019 17 C -0.575 4.575 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.205 1.205 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.192 0.808 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.265 0.824 -21.465 23.394 hybrid contribution 0.105 -0.656 1.691 1.817 sum -9.160 0.169 -19.774 21.793 Atomic orbital electron populations 1.21823 0.89669 1.04465 1.04068 1.23325 0.97545 0.79195 1.02152 1.86436 1.22911 1.33738 1.83315 1.24362 0.81562 0.93154 0.71588 1.90658 1.61321 1.43999 1.46005 1.21017 0.84876 0.90787 0.99500 0.83253 1.24588 0.99965 1.02810 0.92417 1.88292 1.16567 1.39166 1.56878 1.24213 0.89981 0.99822 0.93670 1.58377 1.11825 1.83669 1.28858 1.05240 0.73217 0.77818 0.73018 1.93501 1.50758 1.69365 1.83662 1.93508 1.42996 1.75238 1.85548 1.30293 1.13025 1.18721 1.08605 1.18857 0.96098 0.98476 0.88494 1.21524 1.48841 0.93517 0.93634 0.90126 1.26126 0.94350 1.00323 0.99400 1.70113 1.48505 1.27442 1.11448 0.85249 0.77790 0.78797 0.78337 1.17609 1.20443 1.20491 0.88296 0.91698 0.89955 0.93148 0.90492 0.86957 0.80764 0.84859 0.87865 0.83141 0.83051 0.97619 0.97447 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.29 71.98 0.74 -1.25 16 2 C 0.05 1.13 6.19 71.98 0.45 1.57 16 3 O -0.35 -8.63 10.22 -51.39 -0.53 -9.15 16 4 C 0.45 12.88 5.11 71.23 0.36 13.25 16 5 O -0.53 -19.26 15.48 27.44 0.42 -18.83 16 6 C 0.15 3.21 3.11 44.96 0.14 3.35 16 7 H 0.15 2.47 8.14 -2.38 -0.02 2.45 16 8 C -0.05 -0.65 7.03 72.51 0.51 -0.14 16 9 S -0.23 -4.05 23.43 -56.49 -1.32 -5.38 16 10 C 0.16 3.49 7.38 127.56 0.94 4.43 16 11 N -0.99 -26.69 2.86 -502.39 -1.44 -28.12 16 12 S 2.61 97.28 5.24 -56.49 -0.30 96.98 16 13 O -0.98 -42.05 15.16 -120.99 -1.83 -43.89 16 14 O -0.98 -43.29 17.53 -127.65 -2.24 -45.53 16 15 C -0.57 -20.95 6.12 71.98 0.44 -20.51 16 16 C 0.02 1.03 4.98 29.85 0.15 1.18 16 17 C -0.54 -29.02 9.11 25.60 0.23 -28.78 16 18 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 21 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.05 1.34 8.13 -2.39 -0.02 1.33 16 29 H 0.08 1.51 8.13 -2.39 -0.02 1.50 16 30 H 0.11 1.41 7.85 -2.39 -0.02 1.39 16 31 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.15 4.65 8.14 -2.39 -0.02 4.63 16 35 H 0.15 4.68 8.14 -2.39 -0.02 4.66 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -81.27 348.57 0.57 -80.71 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.06 Total: 11.55 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 4.43 Total: -26.65 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.15 Total: -84.36 kcal Atomic # 8 Polarization: -113.23 SS G_CDS: -4.17 Total: -117.40 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 93.22 SS G_CDS: -1.62 Total: 91.60 kcal Total: -81.27 0.57 -80.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439188735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.582 kcal (2) G-P(sol) polarization free energy of solvation -81.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds