Wall clock time and date at job start Fri Apr 10 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34760 * 116.99551 * 2 1 4 4 O 1.21514 * 120.00392 * 0.02562 * 3 2 1 5 5 C 1.47407 * 119.99922 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.48034 * 0.02562 * 5 3 2 7 7 N 1.31628 * 120.50782 * 180.02562 * 6 5 3 8 8 C 1.32636 * 121.64635 * 0.02562 * 7 6 5 9 9 N 1.38433 * 119.53919 * 179.97438 * 8 7 6 10 10 C 1.47486 * 110.99594 * 359.97438 * 9 8 7 11 11 C 1.53506 * 87.93221 * 221.29418 * 10 9 8 12 12 O 1.42903 * 114.17342 * 272.37723 * 11 10 9 13 13 C 1.50697 * 114.17119 * 139.66929 * 11 10 9 14 14 H 1.08001 * 119.99810 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00096 * 179.97438 * 13 11 10 16 16 N 1.31506 * 120.00311 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99727 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47459 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46949 * 120.00585 * 17 15 13 20 20 H 1.48506 * 109.47311 * 239.99881 * 17 15 13 21 21 C 1.47474 * 111.00100 * 264.03271 * 9 8 7 22 22 C 1.39377 * 120.93577 * 0.25250 * 8 7 6 23 23 N 1.48019 * 120.31176 * 179.72394 * 22 8 7 24 24 O 1.21802 * 120.00031 * 179.97438 * 23 22 8 25 25 O 1.21798 * 119.99495 * 359.97438 * 23 22 8 26 26 C 1.36878 * 119.37991 * 359.49016 * 22 8 7 27 27 H 1.08993 * 109.47496 * 300.00084 * 1 2 3 28 28 H 1.09002 * 109.47054 * 60.00528 * 1 2 3 29 29 H 1.08999 * 109.46486 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.74632 * 0.04082 * 6 5 3 31 31 H 1.09000 * 113.47378 * 336.06627 * 10 9 8 32 32 H 1.08999 * 113.47621 * 106.52819 * 10 9 8 33 33 H 0.96702 * 114.00279 * 179.97438 * 12 11 10 34 34 H 0.97001 * 120.00814 * 180.02562 * 16 15 13 35 35 H 1.09008 * 113.47506 * 253.46282 * 21 9 8 36 36 H 1.08998 * 113.48033 * 23.93056 * 21 9 8 37 37 H 1.08005 * 120.75101 * 180.24668 * 26 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5358 1.2780 0.0006 6 6 4.3063 0.1132 0.0006 7 7 5.6208 0.1815 0.0016 8 6 6.2571 1.3453 0.0031 9 7 7.6413 1.3663 0.0047 10 6 8.1905 -0.0025 0.0049 11 6 9.2385 0.4779 1.0186 12 8 10.4153 1.0310 0.4261 13 6 9.5304 -0.5094 2.1191 14 1 9.0167 -1.4591 2.1428 15 6 10.4540 -0.2006 3.0952 16 7 11.0798 0.9557 3.0662 17 14 10.8163 -1.4247 4.4589 18 1 9.9867 -2.6410 4.2656 19 1 12.2538 -1.7955 4.4221 20 1 10.4970 -0.8109 5.7729 21 6 8.1660 1.5164 1.3747 22 6 5.5519 2.5475 0.0090 23 7 6.2762 3.8384 0.0168 24 8 5.6542 4.8856 0.0215 25 8 7.4941 3.8532 0.0186 26 6 4.1834 2.5233 0.0026 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 3.8198 -0.8510 -0.0005 31 1 7.5037 -0.7459 0.4096 32 1 8.6173 -0.2993 -0.9531 33 1 11.0736 1.3332 1.0668 34 1 11.7298 1.1728 3.7526 35 1 8.5721 2.5074 1.5780 36 1 7.4728 1.1782 2.1448 37 1 3.6148 3.4416 0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444834235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:48 Heat of formation + Delta-G solvation = -29.034668 kcal Electronic energy + Delta-G solvation = -27558.562023 eV Core-core repulsion = 23307.409202 eV Total energy + Delta-G solvation = -4251.152820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25067 -41.13162 -40.52660 -38.90275 -36.85837 -36.21402 -34.73237 -33.41947 -32.28136 -32.02425 -28.73633 -27.76825 -26.57473 -25.51001 -25.33540 -23.47817 -22.86952 -21.46002 -19.47218 -19.07260 -18.57431 -18.00197 -17.76984 -17.28749 -17.16360 -16.76802 -16.53758 -16.39388 -15.33672 -15.04051 -14.62155 -14.32958 -14.07845 -13.86167 -13.69810 -13.38656 -13.06813 -12.58881 -12.33823 -11.94049 -11.60744 -11.41010 -11.24697 -11.22568 -11.14011 -11.03699 -10.87973 -10.81100 -10.76287 -10.52678 -10.36825 -10.11403 -9.84126 -9.57434 -8.83734 -8.65310 -8.22488 -6.42676 -4.53405 -0.24059 0.10327 1.37120 1.46010 2.04752 2.22155 3.09995 3.12228 3.20803 3.23847 3.49185 3.87061 4.10897 4.15050 4.18798 4.42841 4.63900 4.72528 4.81083 4.81666 4.93412 5.15039 5.27856 5.45550 5.65517 5.69480 5.85376 5.90898 6.02533 6.40042 6.44991 6.56860 6.78614 7.10110 7.22627 7.31633 7.38758 7.60484 7.77613 7.94185 8.50157 9.17474 9.51557 10.63641 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003866 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.161875 B = 7240.972633 C = 8433.061159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.525 3.475 4 O -0.501 6.501 5 C -0.227 4.227 6 C 0.233 3.767 7 N -0.507 5.507 8 C 0.391 3.609 9 N -0.414 5.414 10 C 0.010 3.990 11 C 0.257 3.743 12 O -0.563 6.563 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.892 5.892 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.281 1.281 21 C 0.001 3.999 22 C -0.121 4.121 23 N 0.036 4.964 24 O -0.194 6.194 25 O -0.095 6.095 26 C 0.069 3.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.189 0.811 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.394 0.606 34 H 0.275 0.725 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 -2.918 -3.924 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.269 6.269 3 C 0.369 3.631 4 O -0.390 6.390 5 C -0.232 4.232 6 C 0.071 3.929 7 N -0.221 5.221 8 C 0.157 3.843 9 N -0.130 5.130 10 C -0.117 4.117 11 C 0.214 3.786 12 O -0.376 6.376 13 C -0.575 4.575 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.532 5.532 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.122 4.122 22 C -0.210 4.210 23 N 0.556 4.444 24 O -0.397 6.397 25 O -0.324 6.324 26 C 0.043 3.957 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.206 0.794 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.659 -3.447 -4.878 17.697 hybrid contribution -0.550 0.372 1.617 1.748 sum -17.209 -3.075 -3.261 17.783 Atomic orbital electron populations 1.23343 0.75207 1.04105 1.02891 1.86520 1.24124 1.31926 1.84368 1.20430 0.87904 0.81850 0.72892 1.90885 1.66439 1.35884 1.45769 1.19747 0.91415 0.94186 1.17892 1.23618 0.88517 0.98676 0.82129 1.68476 1.10199 1.24896 1.18553 1.21139 0.95079 0.86198 0.81871 1.66270 0.97824 1.24011 1.24930 1.24384 0.96725 0.88325 1.02280 1.19305 0.82576 0.88029 0.88647 1.86069 1.30072 1.82280 1.39179 1.21526 1.24122 1.03132 1.08671 0.90901 1.25105 0.94671 0.95392 0.97918 1.69284 1.26804 1.21441 1.35632 0.86283 0.78512 0.80913 0.80855 1.19424 1.20454 1.20684 1.25200 0.98701 1.05452 0.82881 1.21324 0.92619 0.85315 1.21773 1.43087 1.01519 1.01412 0.98402 1.94510 1.69318 1.19962 1.55956 1.94700 0.93935 1.93739 1.50008 1.21114 0.91447 0.99749 0.83426 0.91559 0.91602 0.87598 0.79416 0.87643 0.89799 0.74943 0.91481 0.88493 0.91283 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.16 9.83 -40.65 -0.40 -3.56 16 3 C 0.53 5.94 7.89 34.46 0.27 6.21 16 4 O -0.50 -6.79 16.20 -19.28 -0.31 -7.10 16 5 C -0.23 -2.70 5.89 -104.83 -0.62 -3.32 16 6 C 0.23 2.68 10.79 -17.11 -0.18 2.50 16 7 N -0.51 -7.70 8.16 -12.13 -0.10 -7.80 16 8 C 0.39 6.88 5.84 -155.28 -0.91 5.97 16 9 N -0.41 -8.41 4.83 -182.90 -0.88 -9.30 16 10 C 0.01 0.20 6.79 -7.61 -0.05 0.15 16 11 C 0.26 6.08 1.57 -91.27 -0.14 5.94 16 12 O -0.56 -14.41 13.54 -35.23 -0.48 -14.88 16 13 C -0.54 -13.30 8.68 -34.44 -0.30 -13.60 16 14 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 16 N -0.89 -22.61 11.02 55.43 0.61 -22.00 16 17 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 C 0.00 0.03 6.20 -7.64 -0.05 -0.02 16 22 C -0.12 -2.02 6.82 -80.02 -0.55 -2.57 16 23 N 0.04 0.67 4.45 33.93 0.15 0.82 16 24 O -0.19 -3.55 18.49 -29.46 -0.54 -4.09 16 25 O -0.10 -1.98 15.40 -29.46 -0.45 -2.43 16 26 C 0.07 0.94 9.15 -39.27 -0.36 0.58 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.19 1.47 7.61 -52.49 -0.40 1.07 16 31 H 0.11 2.03 6.60 -51.93 -0.34 1.69 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 33 H 0.39 10.27 6.33 45.56 0.29 10.55 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 35 H 0.10 2.26 7.09 -51.92 -0.37 1.90 16 36 H 0.07 1.48 7.85 -51.93 -0.41 1.08 16 37 H 0.17 2.21 7.32 -52.48 -0.38 1.83 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -28.59 329.84 -7.22 -35.80 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.85 Total: 10.51 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.91 Total: 4.82 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.22 Total: -38.28 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -2.19 Total: -32.07 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.59 -7.22 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444834235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.769 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds