Wall clock time and date at job start Fri Apr 10 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80992 * 1 3 3 C 1.76204 * 100.00366 * 2 1 4 4 N 1.30311 * 126.16869 * 0.02562 * 3 2 1 5 5 N 1.26098 * 117.60476 * 179.97438 * 4 3 2 6 6 C 1.29319 * 117.97317 * 0.02562 * 5 4 3 7 7 C 1.50706 * 126.05582 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47106 * 90.02471 * 7 6 5 9 9 S 1.65600 * 119.99728 * 164.99627 * 8 7 6 10 10 O 1.42110 * 104.27500 * 181.07030 * 9 8 7 11 11 O 1.42095 * 104.28107 * 308.92662 * 9 8 7 12 12 C 1.81401 * 104.45089 * 65.00161 * 9 8 7 13 13 C 1.52994 * 109.47446 * 179.97438 * 12 9 8 14 14 C 1.50695 * 109.47159 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00174 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00408 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99259 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00380 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46945 * 60.00178 * 18 16 14 20 20 H 1.48500 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47194 * 300.00013 * 18 16 14 22 22 S 1.76476 * 107.88239 * 0.26196 * 6 5 4 23 23 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47426 * 300.00296 * 1 2 3 25 25 H 1.09007 * 109.47055 * 59.99907 * 1 2 3 26 26 H 1.09001 * 109.46953 * 210.02210 * 7 6 5 27 27 H 1.09000 * 109.47318 * 330.01808 * 7 6 5 28 28 H 0.96998 * 120.00106 * 344.99857 * 8 7 6 29 29 H 1.09002 * 109.47012 * 300.00005 * 12 9 8 30 30 H 1.09001 * 109.47013 * 59.99160 * 12 9 8 31 31 H 1.09002 * 109.47172 * 300.00094 * 13 12 9 32 32 H 1.08997 * 109.46953 * 60.00103 * 13 12 9 33 33 H 0.96995 * 119.99744 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.2136 2.6753 0.0005 5 7 1.6151 3.8707 0.0009 6 6 2.8909 4.0820 0.0003 7 6 3.5669 5.4290 0.0012 8 7 3.7873 5.8638 1.3827 9 16 4.8291 7.1109 1.7019 10 8 4.8081 7.2313 3.1177 11 8 6.0211 6.7565 1.0145 12 6 4.0543 8.5573 0.9285 13 6 4.9319 9.7894 1.1572 14 6 4.2878 10.9911 0.5152 15 1 3.3468 10.8864 -0.0043 16 6 4.9004 12.2241 0.5902 17 7 6.0465 12.3515 1.2225 18 14 4.1024 13.7135 -0.2061 19 1 2.7646 13.9402 0.3974 20 1 4.9548 14.9092 0.0149 21 1 3.9536 13.4750 -1.6643 22 16 3.7000 2.5137 -0.0086 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.5248 5.3551 -0.5136 27 1 2.9340 6.1535 -0.5113 28 1 3.3231 5.4213 2.1103 29 1 3.9450 8.3821 -0.1418 30 1 3.0723 8.7237 1.3714 31 1 5.0407 9.9644 2.2276 32 1 5.9139 9.6232 0.7145 33 1 6.4777 13.2188 1.2750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000445725005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:50 Heat of formation + Delta-G solvation = -15.751751 kcal Electronic energy + Delta-G solvation = -19706.658854 eV Core-core repulsion = 16341.198623 eV Total energy + Delta-G solvation = -3365.460231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 323.022 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33970 -36.75866 -35.93088 -35.51567 -33.92855 -31.93771 -31.20206 -29.49512 -28.13592 -25.64134 -25.11519 -21.74576 -21.26368 -19.68289 -19.10917 -17.97169 -17.52158 -16.73208 -16.44640 -15.81672 -15.54197 -15.23773 -14.79211 -14.56023 -14.18813 -14.11420 -13.97883 -13.52551 -13.40830 -13.04975 -12.53468 -11.93320 -11.80098 -11.70705 -11.63266 -11.59008 -11.08472 -11.02072 -10.99712 -10.87138 -10.63261 -10.48226 -10.41042 -10.05562 -9.90867 -9.63160 -9.13179 -8.51786 -8.31313 -6.14299 -4.20040 -0.23849 0.10444 0.66353 0.72608 1.00621 1.51705 2.06738 3.02826 3.26670 3.31655 3.33384 3.62629 4.13303 4.35470 4.38051 4.54751 4.60573 4.64245 4.64386 5.11594 5.16592 5.20981 5.26693 5.38050 5.58864 5.74681 6.43441 6.81594 7.26572 7.32351 7.78545 8.08136 8.14737 8.83182 9.44879 10.96643 Molecular weight = 323.02amu Principal moments of inertia in cm(-1) A = 0.028744 B = 0.002490 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.896701 B =11241.690401 C =11805.350382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S 0.028 5.972 3 C -0.015 4.015 4 N -0.267 5.267 5 N -0.233 5.233 6 C 0.022 3.978 7 C 0.200 3.800 8 N -1.125 6.125 9 S 2.591 3.409 10 O -0.959 6.959 11 O -0.963 6.963 12 C -0.587 4.587 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 S 0.141 5.859 23 H 0.112 0.888 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.416 0.584 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 -25.284 -3.978 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.257 5.743 3 C -0.401 4.401 4 N -0.109 5.109 5 N -0.071 5.071 6 C -0.263 4.263 7 C 0.069 3.931 8 N -0.882 5.882 9 S 2.689 3.311 10 O -0.950 6.950 11 O -0.953 6.953 12 C -0.721 4.721 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 S 0.381 5.619 23 H 0.131 0.869 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.250 0.750 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.284 -26.060 -3.600 27.298 hybrid contribution -2.021 1.911 -0.446 2.817 sum -9.305 -24.149 -4.046 26.194 Atomic orbital electron populations 1.23690 0.93253 1.07174 1.07781 1.85791 1.08440 0.90211 1.89902 1.31559 0.95506 1.06423 1.06632 1.71792 1.28353 0.93411 1.17367 1.70818 1.11756 1.11737 1.12760 1.29862 0.92022 0.99859 1.04572 1.19724 1.00756 0.87786 0.84817 1.55988 1.66320 1.53579 1.12356 1.05742 0.74532 0.75729 0.75100 1.93575 1.86380 1.86167 1.28854 1.93547 1.43814 1.81833 1.76063 1.30444 1.13014 1.16377 1.12265 1.18974 0.94024 0.89205 0.98916 1.20958 1.07324 0.92166 1.35647 0.92021 1.25071 0.94945 0.99203 0.95264 1.69942 1.16243 1.24932 1.41700 0.86517 0.79249 0.81645 0.79788 1.20067 1.21091 1.20067 1.86017 1.07358 1.00127 1.68416 0.86923 0.88585 0.88599 0.87273 0.87537 0.75032 0.86079 0.85738 0.94761 0.94717 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.03 101.05 1.01 0.27 16 2 S 0.03 0.20 22.96 -107.50 -2.47 -2.27 16 3 C -0.01 -0.15 7.85 52.12 0.41 0.26 16 4 N -0.27 -3.21 10.96 31.32 0.34 -2.87 16 5 N -0.23 -2.96 11.55 33.57 0.39 -2.58 16 6 C 0.02 0.24 7.19 -13.33 -0.10 0.15 16 7 C 0.20 2.12 6.75 -5.19 -0.04 2.08 16 8 N -1.12 -13.79 5.88 -11.66 -0.07 -13.86 16 9 S 2.59 43.05 5.46 -107.50 -0.59 42.47 16 10 O -0.96 -19.06 18.08 -57.54 -1.04 -20.10 16 11 O -0.96 -18.35 17.50 -57.54 -1.01 -19.36 16 12 C -0.59 -10.51 6.01 37.15 0.22 -10.29 16 13 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 14 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 17 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 18 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 S 0.14 1.37 23.53 -107.50 -2.53 -1.16 16 23 H 0.11 0.28 8.14 -51.92 -0.42 -0.14 16 24 H 0.10 0.53 8.14 -51.91 -0.42 0.11 16 25 H 0.10 0.52 8.14 -51.91 -0.42 0.10 16 26 H 0.11 1.04 7.69 -51.93 -0.40 0.64 16 27 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.42 4.62 8.61 -34.47 -0.30 4.33 16 29 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 30 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -35.36 334.91 -8.86 -44.23 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.62 Total: -0.25 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 0.96 Total: -19.87 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 1.40 Total: -44.69 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -2.05 Total: -39.46 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -5.58 Total: 39.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.36 -8.86 -44.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445725005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.474 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds