Wall clock time and date at job start Fri Apr 10 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47366 * 154.29419 * 3 2 1 5 5 C 1.36871 * 119.99649 * 285.42985 * 4 3 2 6 6 H 1.08007 * 119.99910 * 163.49498 * 5 4 3 7 7 C 1.39044 * 120.00340 * 343.49720 * 5 4 3 8 8 N 1.31371 * 119.99982 * 29.64593 * 7 5 4 9 9 Si 1.86799 * 120.00064 * 209.64197 * 7 5 4 10 10 H 1.48491 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47005 * 120.00151 * 9 7 5 12 12 H 1.48497 * 109.47457 * 239.99825 * 9 7 5 13 13 C 1.34778 * 120.00088 * 105.42621 * 4 3 2 14 14 O 1.21590 * 119.99871 * 186.60781 * 13 4 3 15 15 C 1.47731 * 119.99852 * 6.60320 * 13 4 3 16 16 C 1.39650 * 120.53455 * 322.95677 * 15 13 4 17 17 N 1.31652 * 120.72433 * 179.97438 * 16 15 13 18 18 C 1.31890 * 121.97056 * 359.97438 * 17 16 15 19 19 C 1.39008 * 120.98751 * 0.02562 * 18 17 16 20 20 N 1.39738 * 120.41764 * 180.02562 * 19 18 17 21 21 S 1.65599 * 120.00161 * 223.85536 * 20 19 18 22 22 C 1.81410 * 104.44660 * 60.78937 * 21 20 19 23 23 O 1.42098 * 104.27899 * 176.85726 * 21 20 19 24 24 O 1.42098 * 104.27891 * 304.71867 * 21 20 19 25 25 C 1.39044 * 119.15995 * 359.97438 * 19 18 17 26 26 H 4.40652 * 5.51459 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47091 * 34.28830 * 3 2 1 28 28 H 1.09004 * 109.46949 * 274.29458 * 3 2 1 29 29 H 0.96995 * 119.99612 * 180.02562 * 8 7 5 30 30 H 1.07999 * 119.63709 * 359.95689 * 16 15 13 31 31 H 1.07991 * 119.50738 * 180.02562 * 18 17 16 32 32 H 0.97003 * 120.00044 * 43.86238 * 20 19 18 33 33 H 1.09000 * 109.46915 * 64.80225 * 22 21 20 34 34 H 1.08995 * 109.46584 * 184.80304 * 22 21 20 35 35 H 1.09004 * 109.46700 * 304.80029 * 22 21 20 36 36 H 1.08000 * 120.89116 * 180.26968 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2454 -0.5991 5 6 3.0645 1.4257 -1.9541 6 1 3.1667 2.4160 -2.3730 7 6 2.8626 0.3342 -2.7914 8 7 2.1855 -0.7065 -2.3621 9 14 3.5540 0.3476 -4.5267 10 1 4.2717 1.6258 -4.7637 11 1 4.4973 -0.7873 -4.6924 12 1 2.4432 0.2146 -5.5032 13 6 3.6508 2.2129 0.1840 14 8 3.9443 3.2910 -0.2955 15 6 3.8606 1.9634 1.6249 16 6 2.9469 1.1982 2.3529 17 7 3.1305 0.9731 3.6370 18 6 4.1723 1.4529 4.2881 19 6 5.1291 2.2243 3.6386 20 7 6.2285 2.7261 4.3400 21 16 6.7134 4.2926 4.1089 22 6 5.2825 5.2881 4.6114 23 8 7.7871 4.4657 5.0235 24 8 6.9221 4.3916 2.7068 25 6 4.9787 2.4893 2.2820 26 1 -1.0503 -0.0002 0.0003 27 1 3.0097 -0.8483 -0.5790 28 1 3.0093 -0.0761 1.0248 29 1 2.0450 -1.4681 -2.9461 30 1 2.0802 0.7868 1.8571 31 1 4.2838 1.2432 5.3416 32 1 6.7078 2.1568 4.9623 33 1 5.0999 5.1497 5.6770 34 1 5.4836 6.3403 4.4107 35 1 4.4044 4.9721 4.0481 36 1 5.7074 3.0818 1.7487 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:03 Heat of formation + Delta-G solvation = 36.596261 kcal Electronic energy + Delta-G solvation = -24998.022857 eV Core-core repulsion = 21192.468878 eV Total energy + Delta-G solvation = -3805.553979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.50490 -38.42335 -37.34992 -36.23009 -35.70549 -35.34603 -32.57402 -31.73324 -31.37418 -29.72552 -29.53704 -26.71064 -25.47014 -23.58277 -23.16494 -20.04340 -19.71609 -18.16763 -18.02532 -17.71974 -17.00353 -16.67883 -16.52739 -16.31162 -15.60713 -15.10897 -14.74020 -14.44674 -14.03526 -13.69769 -13.57344 -13.40686 -13.38486 -13.13009 -12.84775 -12.49185 -12.36307 -12.32162 -11.89111 -11.78365 -11.51541 -11.41804 -11.13556 -11.03626 -10.65613 -10.37646 -9.71981 -9.56635 -9.42417 -9.31000 -8.80818 -8.67191 -8.36068 -8.20039 -6.61736 -3.92848 -0.06852 0.96515 1.29221 2.32430 3.04734 3.19206 3.26986 3.45322 3.49055 3.67676 3.81282 3.95380 3.98110 4.14602 4.41448 4.54877 4.66387 4.73655 4.88728 4.89610 5.01015 5.22232 5.28340 5.44319 5.44610 5.63833 5.82119 6.03918 6.13475 6.44946 6.54732 6.80566 6.84759 6.94020 7.36720 7.86350 8.00600 8.24794 8.66180 8.94206 9.13666 9.71867 10.36624 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003894 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.596278 B = 7188.515417 C = 8171.882661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.119 4.119 3 C 0.189 3.811 4 N -0.419 5.419 5 C -0.311 4.311 6 H 0.113 0.887 7 C 0.043 3.957 8 N -0.842 5.842 9 Si 0.918 3.082 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.470 3.530 14 O -0.575 6.575 15 C -0.118 4.118 16 C 0.092 3.908 17 N -0.467 5.467 18 C 0.083 3.917 19 C 0.079 3.921 20 N -1.050 6.050 21 S 2.606 3.394 22 C -0.667 4.667 23 O -0.957 6.957 24 O -0.938 6.938 25 C -0.077 4.077 26 H 0.203 0.797 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.273 0.727 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.426 0.574 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 2.390 14.399 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.120 4.120 3 C 0.067 3.933 4 N -0.134 5.134 5 C -0.438 4.438 6 H 0.130 0.870 7 C -0.164 4.164 8 N -0.478 5.478 9 Si 0.743 3.257 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.259 3.741 14 O -0.460 6.460 15 C -0.124 4.124 16 C -0.067 4.067 17 N -0.175 5.175 18 C -0.078 4.078 19 C -0.019 4.019 20 N -0.801 5.801 21 S 2.699 3.301 22 C -0.818 4.818 23 O -0.947 6.947 24 O -0.928 6.928 25 C -0.106 4.106 26 H 0.220 0.780 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.195 0.805 31 H 0.175 0.825 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.296 2.646 14.075 14.696 hybrid contribution 0.004 0.002 -0.782 0.782 sum 3.300 2.647 13.293 13.950 Atomic orbital electron populations 1.24384 0.95437 1.02241 1.04669 1.22954 0.94103 0.98406 0.96535 1.19522 0.84661 0.91044 0.98098 1.43701 1.49178 1.13586 1.06962 1.19748 1.48600 0.96136 0.79317 0.86955 1.25400 0.95002 0.95065 1.00925 1.70159 1.31700 1.07963 1.37992 0.86016 0.79284 0.79107 0.81300 1.18737 1.20217 1.20714 1.17436 0.86323 0.85864 0.84450 1.90658 1.57381 1.23808 1.74146 1.21277 0.95761 0.98252 0.97132 1.23763 0.99353 0.94088 0.89463 1.67711 1.20123 1.20273 1.09369 1.22831 0.89136 0.95931 0.99944 1.18297 0.89750 1.02604 0.91264 1.53214 1.40549 1.30549 1.55791 1.05221 0.75939 0.73830 0.75106 1.30442 1.22281 1.16120 1.12947 1.93621 1.50379 1.84728 1.65956 1.93656 1.84095 1.84807 1.30211 1.22417 0.98202 0.98448 0.91531 0.78002 0.85430 0.90137 0.91645 0.80537 0.82497 0.73695 0.85125 0.84895 0.84924 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.87 19.25 29.55 0.57 -4.30 16 2 C -0.12 -2.55 10.15 -37.12 -0.38 -2.92 16 3 C 0.19 4.07 4.79 -6.83 -0.03 4.04 16 4 N -0.42 -10.27 2.65 -119.05 -0.32 -10.59 16 5 C -0.31 -8.25 9.14 -15.00 -0.14 -8.39 16 6 H 0.11 3.16 7.40 -52.48 -0.39 2.77 16 7 C 0.04 1.05 5.22 -17.45 -0.09 0.96 16 8 N -0.84 -20.49 8.95 55.50 0.50 -19.99 16 9 Si 0.92 19.60 29.64 -169.99 -5.04 14.56 16 10 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 13 C 0.47 11.35 7.34 -12.38 -0.09 11.26 16 14 O -0.57 -15.78 16.54 5.29 0.09 -15.70 16 15 C -0.12 -2.29 5.44 -104.85 -0.57 -2.86 16 16 C 0.09 1.59 8.56 -17.10 -0.15 1.45 16 17 N -0.47 -7.08 10.34 -12.73 -0.13 -7.22 16 18 C 0.08 1.02 11.11 -17.24 -0.19 0.83 16 19 C 0.08 1.01 5.98 -83.67 -0.50 0.51 16 20 N -1.05 -10.06 5.69 32.47 0.18 -9.88 16 21 S 2.61 27.15 5.98 -107.50 -0.64 26.51 16 22 C -0.67 -5.01 10.75 101.05 1.09 -3.93 16 23 O -0.96 -11.80 18.08 -57.54 -1.04 -12.84 16 24 O -0.94 -14.17 15.20 -57.54 -0.87 -15.05 16 25 C -0.08 -1.31 8.95 -38.64 -0.35 -1.65 16 26 H 0.20 3.15 7.80 -54.08 -0.42 2.73 16 27 H 0.13 2.91 5.93 -51.93 -0.31 2.61 16 28 H 0.08 1.53 3.90 -51.93 -0.20 1.32 16 29 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 30 H 0.18 3.17 4.28 -52.49 -0.22 2.95 16 31 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.43 2.88 8.92 -34.47 -0.31 2.57 16 33 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.13 1.11 8.06 -51.92 -0.42 0.69 16 36 H 0.17 3.24 5.64 -52.49 -0.30 2.94 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.43 325.64 -6.17 -40.59 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.97 Total: 9.70 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.83 Total: -5.01 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.23 Total: -47.67 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.83 Total: -43.59 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.04 Total: 14.56 kcal Atomic # 16 Polarization: 27.15 SS G_CDS: -0.64 Total: 26.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.43 -6.17 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.188 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds