Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47366 * 154.29419 * 3 2 1 5 5 C 1.36871 * 119.99649 * 285.42985 * 4 3 2 6 6 H 1.08007 * 119.99910 * 163.49498 * 5 4 3 7 7 C 1.39044 * 120.00340 * 343.49720 * 5 4 3 8 8 N 1.31371 * 119.99982 * 29.64593 * 7 5 4 9 9 Si 1.86799 * 120.00064 * 209.64197 * 7 5 4 10 10 H 1.48491 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47005 * 120.00151 * 9 7 5 12 12 H 1.48497 * 109.47457 * 239.99825 * 9 7 5 13 13 C 1.34778 * 120.00088 * 105.42621 * 4 3 2 14 14 O 1.21590 * 119.99871 * 186.60781 * 13 4 3 15 15 C 1.47731 * 119.99852 * 6.60320 * 13 4 3 16 16 C 1.39650 * 120.53455 * 322.95677 * 15 13 4 17 17 N 1.31652 * 120.72433 * 179.97438 * 16 15 13 18 18 C 1.31890 * 121.97056 * 359.97438 * 17 16 15 19 19 C 1.39008 * 120.98751 * 0.02562 * 18 17 16 20 20 N 1.39738 * 120.41764 * 180.02562 * 19 18 17 21 21 S 1.65599 * 120.00161 * 223.85536 * 20 19 18 22 22 C 1.81410 * 104.44660 * 60.78937 * 21 20 19 23 23 O 1.42098 * 104.27899 * 176.85726 * 21 20 19 24 24 O 1.42098 * 104.27891 * 304.71867 * 21 20 19 25 25 C 1.39044 * 119.15995 * 359.97438 * 19 18 17 26 26 H 4.40652 * 5.51459 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47091 * 34.28830 * 3 2 1 28 28 H 1.09004 * 109.46949 * 274.29458 * 3 2 1 29 29 H 0.96995 * 119.99612 * 180.02562 * 8 7 5 30 30 H 1.07999 * 119.63709 * 359.95689 * 16 15 13 31 31 H 1.07991 * 119.50738 * 180.02562 * 18 17 16 32 32 H 0.97003 * 120.00044 * 43.86238 * 20 19 18 33 33 H 1.09000 * 109.46915 * 64.80225 * 22 21 20 34 34 H 1.08995 * 109.46584 * 184.80304 * 22 21 20 35 35 H 1.09004 * 109.46700 * 304.80029 * 22 21 20 36 36 H 1.08000 * 120.89116 * 180.26968 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2454 -0.5991 5 6 3.0645 1.4257 -1.9541 6 1 3.1667 2.4160 -2.3730 7 6 2.8626 0.3342 -2.7914 8 7 2.1855 -0.7065 -2.3621 9 14 3.5540 0.3476 -4.5267 10 1 4.2717 1.6258 -4.7637 11 1 4.4973 -0.7873 -4.6924 12 1 2.4432 0.2146 -5.5032 13 6 3.6508 2.2129 0.1840 14 8 3.9443 3.2910 -0.2955 15 6 3.8606 1.9634 1.6249 16 6 2.9469 1.1982 2.3529 17 7 3.1305 0.9731 3.6370 18 6 4.1723 1.4529 4.2881 19 6 5.1291 2.2243 3.6386 20 7 6.2285 2.7261 4.3400 21 16 6.7134 4.2926 4.1089 22 6 5.2825 5.2881 4.6114 23 8 7.7871 4.4657 5.0235 24 8 6.9221 4.3916 2.7068 25 6 4.9787 2.4893 2.2820 26 1 -1.0503 -0.0002 0.0003 27 1 3.0097 -0.8483 -0.5790 28 1 3.0093 -0.0761 1.0248 29 1 2.0450 -1.4681 -2.9461 30 1 2.0802 0.7868 1.8571 31 1 4.2838 1.2432 5.3416 32 1 6.7078 2.1568 4.9623 33 1 5.0999 5.1497 5.6770 34 1 5.4836 6.3403 4.4107 35 1 4.4044 4.9721 4.0481 36 1 5.7074 3.0818 1.7487 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = 9.124800 kcal Electronic energy + Delta-G solvation = -24999.214109 eV Core-core repulsion = 21192.468878 eV Total energy + Delta-G solvation = -3806.745231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88462 -40.06692 -38.33020 -37.34056 -37.18417 -36.67099 -34.30320 -33.26512 -33.01204 -30.74946 -30.37687 -28.39441 -27.17639 -25.03994 -24.44728 -21.58743 -20.69020 -19.90464 -19.05610 -19.01433 -18.45297 -17.99139 -17.87817 -17.37068 -16.75728 -16.66976 -16.27459 -16.03232 -15.74342 -15.02335 -14.79775 -14.71091 -14.26681 -14.17438 -14.07448 -14.03700 -13.68807 -13.46369 -13.31423 -13.10981 -12.93565 -12.66919 -12.48538 -12.44973 -12.15095 -12.00247 -11.33702 -11.15388 -10.99042 -10.72483 -10.52629 -10.33614 -10.09535 -9.60098 -8.48918 -5.91186 -0.92064 -0.30060 0.00895 1.32322 1.41251 1.45061 1.54427 1.84350 2.03797 2.24634 2.29216 2.61158 2.68413 2.80153 3.08514 3.17504 3.43538 3.62554 3.77447 3.78394 3.88832 3.93160 4.02092 4.16014 4.33547 4.49349 4.62417 4.84366 4.88062 5.09096 5.10961 5.37109 5.42519 5.47546 5.94089 5.96292 6.35716 6.76524 7.03082 7.06989 7.27576 7.85745 8.48256 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003894 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.596278 B = 7188.515417 C = 8171.882661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C 0.196 3.804 4 N -0.429 5.429 5 C -0.359 4.359 6 H 0.078 0.922 7 C 0.021 3.979 8 N -0.847 5.847 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.264 1.264 12 H -0.271 1.271 13 C 0.461 3.539 14 O -0.625 6.625 15 C -0.142 4.142 16 C 0.095 3.905 17 N -0.466 5.466 18 C 0.113 3.887 19 C 0.104 3.896 20 N -1.036 6.036 21 S 2.611 3.389 22 C -0.650 4.650 23 O -0.975 6.975 24 O -0.993 6.993 25 C -0.088 4.088 26 H 0.240 0.760 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.279 0.721 30 H 0.170 0.830 31 H 0.214 0.786 32 H 0.443 0.557 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.129 0.871 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 1.459 17.549 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.164 4.164 3 C 0.074 3.926 4 N -0.144 5.144 5 C -0.485 4.485 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.482 5.482 9 Si 0.800 3.200 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.196 1.196 13 C 0.252 3.748 14 O -0.514 6.514 15 C -0.148 4.148 16 C -0.063 4.063 17 N -0.174 5.174 18 C -0.050 4.050 19 C 0.005 3.995 20 N -0.789 5.789 21 S 2.709 3.291 22 C -0.804 4.804 23 O -0.965 6.965 24 O -0.983 6.983 25 C -0.118 4.118 26 H 0.257 0.743 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.231 0.769 32 H 0.284 0.716 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.705 1.638 17.245 17.533 hybrid contribution 0.204 0.372 -1.514 1.572 sum 2.909 2.010 15.731 16.124 Atomic orbital electron populations 1.25294 0.96382 1.00186 1.02771 1.23175 0.94680 1.00272 0.98314 1.19457 0.85294 0.88995 0.98814 1.43821 1.49473 1.14537 1.06550 1.19522 1.52455 0.95550 0.80990 0.90403 1.25958 0.94355 0.94473 1.03732 1.70212 1.30926 1.08024 1.39013 0.85170 0.78775 0.78492 0.77590 1.20428 1.18871 1.19587 1.18222 0.85065 0.85051 0.86465 1.90591 1.59144 1.25800 1.75866 1.20862 0.98085 1.01333 0.94556 1.23485 0.98621 0.93808 0.90345 1.67832 1.21256 1.20397 1.07925 1.23694 0.86764 0.92684 1.01808 1.18148 0.90491 1.01375 0.89472 1.52994 1.39639 1.30854 1.55422 1.04830 0.76677 0.74057 0.73567 1.30302 1.19034 1.15998 1.15062 1.93597 1.52187 1.84945 1.65778 1.93607 1.85557 1.85534 1.33634 1.22344 0.97353 0.98564 0.93546 0.74343 0.87163 0.87798 0.91000 0.81366 0.76909 0.71620 0.81565 0.83126 0.85274 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.69 19.25 74.32 1.43 -7.26 16 2 C -0.16 -7.07 10.15 31.13 0.32 -6.75 16 3 C 0.20 8.73 4.79 84.57 0.40 9.14 16 4 N -0.43 -22.32 2.65 -648.82 -1.72 -24.04 16 5 C -0.36 -20.26 9.14 84.10 0.77 -19.50 16 6 H 0.08 4.80 7.40 -2.91 -0.02 4.78 16 7 C 0.02 1.08 5.22 84.96 0.44 1.53 16 8 N -0.85 -41.80 8.95 21.68 0.19 -41.61 16 9 Si 0.98 41.38 29.64 68.60 2.03 43.41 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 13 C 0.46 23.79 7.34 86.75 0.64 24.43 16 14 O -0.63 -37.19 16.54 -4.00 -0.07 -37.26 16 15 C -0.14 -5.67 5.44 -20.01 -0.11 -5.78 16 16 C 0.09 3.23 8.56 85.06 0.73 3.95 16 17 N -0.47 -12.68 10.34 -194.19 -2.01 -14.68 16 18 C 0.11 2.23 11.11 84.87 0.94 3.17 16 19 C 0.10 2.39 5.98 38.26 0.23 2.62 16 20 N -1.04 -16.79 5.69 -51.19 -0.29 -17.09 16 21 S 2.61 50.38 5.98 -56.49 -0.34 50.04 16 22 C -0.65 -7.57 10.75 113.37 1.22 -6.35 16 23 O -0.97 -22.24 18.08 -127.65 -2.31 -24.55 16 24 O -0.99 -30.84 15.20 -127.65 -1.94 -32.78 16 25 C -0.09 -3.04 8.95 22.88 0.20 -2.83 16 26 H 0.24 6.80 7.80 -4.40 -0.03 6.77 16 27 H 0.11 5.23 5.93 -2.39 -0.01 5.21 16 28 H 0.10 4.03 3.90 -2.39 -0.01 4.02 16 29 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 30 H 0.17 6.05 4.28 -2.91 -0.01 6.04 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.44 4.23 8.92 -96.74 -0.86 3.37 16 33 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.13 1.78 8.06 -2.39 -0.02 1.76 16 36 H 0.15 5.99 5.64 -2.91 -0.02 5.97 16 Total: -1.00 -81.16 325.64 1.07 -80.09 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.30 Total: 22.11 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 7.21 Total: -3.64 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -3.83 Total: -97.42 kcal Atomic # 8 Polarization: -90.28 SS G_CDS: -4.31 Total: -94.59 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 50.38 SS G_CDS: -0.34 Total: 50.04 kcal Total: -81.16 1.07 -80.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.213 kcal (2) G-P(sol) polarization free energy of solvation -81.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds