Wall clock time and date at job start Fri Apr 10 2020 18:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47422 * 334.27686 * 3 2 1 5 5 C 1.36871 * 119.99622 * 83.29689 * 4 3 2 6 6 H 1.08006 * 119.99817 * 166.18733 * 5 4 3 7 7 C 1.39047 * 120.00600 * 346.18630 * 5 4 3 8 8 N 1.31361 * 119.99612 * 359.70437 * 7 5 4 9 9 Si 1.86797 * 120.00381 * 179.70011 * 7 5 4 10 10 H 1.48503 * 109.47269 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47225 * 210.00378 * 9 7 5 12 12 H 1.48505 * 109.46917 * 330.00247 * 9 7 5 13 13 C 1.34776 * 119.99840 * 263.29996 * 4 3 2 14 14 O 1.21590 * 119.99709 * 184.37906 * 13 4 3 15 15 C 1.47720 * 120.00099 * 4.38356 * 13 4 3 16 16 C 1.40089 * 120.56531 * 300.74918 * 15 13 4 17 17 C 1.38331 * 118.28367 * 179.97438 * 16 15 13 18 18 S 1.76199 * 120.34589 * 179.97438 * 17 16 15 19 19 N 1.65601 * 107.21802 * 270.02465 * 18 17 16 20 20 O 1.42099 * 106.40131 * 23.56160 * 18 17 16 21 21 O 1.42095 * 106.40439 * 156.48531 * 18 17 16 22 22 C 1.38369 * 119.30947 * 0.02562 * 17 16 15 23 23 N 1.31937 * 121.09686 * 0.27133 * 22 17 16 24 24 C 1.31678 * 121.87954 * 359.43531 * 23 22 17 25 25 C 1.50704 * 119.71941 * 180.28887 * 24 23 22 26 26 H 4.40641 * 5.51338 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47103 * 214.27474 * 3 2 1 28 28 H 1.09003 * 109.47033 * 94.27813 * 3 2 1 29 29 H 0.97000 * 119.99642 * 180.02562 * 8 7 5 30 30 H 1.07994 * 120.85806 * 0.02562 * 16 15 13 31 31 H 0.97001 * 120.00248 * 150.00422 * 19 18 17 32 32 H 0.97001 * 120.00017 * 329.99809 * 19 18 17 33 33 H 1.07999 * 119.45144 * 179.97438 * 22 17 16 34 34 H 1.08996 * 109.47361 * 274.65196 * 25 24 23 35 35 H 1.08997 * 109.47233 * 34.65270 * 25 24 23 36 36 H 1.08998 * 109.47157 * 154.65600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2434 0.5995 5 6 3.2332 -2.3771 -0.1611 6 1 3.7934 -3.2254 0.2038 7 6 2.6117 -2.4369 -1.4035 8 7 1.9254 -1.4074 -1.8448 9 14 2.7527 -3.9811 -2.4452 10 1 1.6347 -4.9024 -2.1186 11 1 2.6892 -3.6157 -3.8831 12 1 4.0465 -4.6528 -2.1618 13 6 3.4880 -1.2716 1.8999 14 8 3.9684 -2.2812 2.3776 15 6 3.2913 -0.0759 2.7447 16 6 3.9116 1.1370 2.4181 17 6 3.6944 2.2269 3.2418 18 16 4.4483 3.7784 2.8826 19 7 5.9138 3.8015 3.6534 20 8 4.7277 3.7757 1.4894 21 8 3.6479 4.7690 3.5128 22 6 2.8799 2.0857 4.3514 23 7 2.3131 0.9293 4.6379 24 6 2.4844 -0.1354 3.8822 25 6 1.8083 -1.4306 4.2517 26 1 -1.0497 -0.0004 0.0000 27 1 3.0090 0.8501 0.5788 28 1 3.0093 0.0775 -1.0248 29 1 1.4916 -1.4493 -2.7113 30 1 4.5424 1.2192 1.5454 31 1 6.6508 4.3089 3.2789 32 1 6.0352 3.3077 4.4794 33 1 2.7091 2.9350 4.9963 34 1 2.4269 -1.9722 4.9673 35 1 0.8368 -1.2188 4.6984 36 1 1.6721 -2.0376 3.3567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491751847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:06 Heat of formation + Delta-G solvation = 8.577052 kcal Electronic energy + Delta-G solvation = -25423.791369 eV Core-core repulsion = 21617.022386 eV Total energy + Delta-G solvation = -3806.768983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53862 -38.39284 -37.23752 -35.92233 -35.47138 -33.41416 -33.23237 -32.59318 -31.70410 -31.36675 -28.06613 -26.59750 -25.42364 -23.75555 -22.54614 -20.53463 -19.41782 -18.15332 -18.00762 -17.52021 -17.08141 -16.86422 -16.42341 -16.25883 -15.49637 -15.12077 -14.73500 -14.59884 -14.06508 -13.92183 -13.45129 -13.06212 -12.62817 -12.53317 -12.37214 -12.28272 -12.23897 -12.15042 -12.04891 -11.89082 -11.49830 -11.45715 -11.19878 -10.70635 -10.65139 -10.49602 -10.04709 -9.65803 -9.62474 -9.37284 -9.08137 -8.87367 -8.60465 -8.12487 -6.45420 -4.07052 0.24806 0.61131 1.07906 2.95228 3.04695 3.14465 3.18896 3.33179 3.49728 3.64313 3.87344 4.00831 4.13420 4.23619 4.29224 4.69045 4.73619 4.78877 4.92970 5.20259 5.36665 5.47855 5.60231 5.69085 5.78500 5.84223 5.86005 6.09657 6.17597 6.26944 6.58278 6.83168 6.84299 7.04342 7.34576 7.73062 7.83792 8.19813 8.83573 8.88666 9.09712 9.61566 10.45631 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.004557 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.090139 B = 6142.568174 C = 6678.572756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.094 4.094 3 C 0.221 3.779 4 N -0.420 5.420 5 C -0.305 4.305 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.938 3.062 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.477 3.523 14 O -0.575 6.575 15 C -0.155 4.155 16 C 0.044 3.956 17 C -0.747 4.747 18 S 2.711 3.289 19 N -1.248 6.248 20 O -0.957 6.957 21 O -0.960 6.960 22 C 0.199 3.801 23 N -0.496 5.496 24 C 0.218 3.782 25 C -0.109 4.109 26 H 0.198 0.802 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.273 0.727 30 H 0.157 0.843 31 H 0.420 0.580 32 H 0.417 0.583 33 H 0.173 0.827 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 8.701 8.357 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.096 4.096 3 C 0.098 3.902 4 N -0.136 5.136 5 C -0.432 4.432 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.764 3.236 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.265 3.735 14 O -0.460 6.460 15 C -0.162 4.162 16 C 0.017 3.983 17 C -0.836 4.836 18 S 2.797 3.203 19 N -0.922 5.922 20 O -0.946 6.946 21 O -0.950 6.950 22 C 0.038 3.962 23 N -0.205 5.205 24 C 0.081 3.919 25 C -0.166 4.166 26 H 0.215 0.785 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.175 0.825 31 H 0.251 0.749 32 H 0.244 0.756 33 H 0.190 0.810 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.186 8.786 8.448 12.598 hybrid contribution 0.430 -1.185 -0.976 1.595 sum 3.616 7.601 7.471 11.254 Atomic orbital electron populations 1.24192 0.95315 1.03576 1.06392 1.22866 0.94041 0.97226 0.95472 1.18866 0.84972 0.85120 1.01215 1.43751 1.53255 1.09896 1.06711 1.19850 1.31203 0.93877 0.98275 0.87107 1.25458 0.95055 0.99010 0.97873 1.69909 1.31161 1.28991 1.20146 0.85734 0.79104 0.80479 0.78303 1.20184 1.20649 1.19193 1.17450 0.87298 0.86988 0.81798 1.90652 1.49701 1.33108 1.72514 1.21264 1.00468 0.95953 0.98509 1.21522 0.92155 0.89748 0.94902 1.31436 1.20235 1.22643 1.09292 1.01363 0.72622 0.73006 0.73264 1.53140 1.32072 1.67031 1.39987 1.93620 1.84121 1.86431 1.30477 1.93605 1.68484 1.55720 1.77159 1.22598 0.87182 0.95331 0.91121 1.67662 1.22920 0.99182 1.30771 1.21728 0.88359 0.94348 0.87476 1.20873 1.00103 0.91669 1.03927 0.78520 0.92386 0.85315 0.91504 0.82535 0.74934 0.75597 0.81018 0.89192 0.90280 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.92 19.24 29.55 0.57 -5.35 16 2 C -0.09 -2.17 11.00 -37.12 -0.41 -2.58 16 3 C 0.22 4.97 5.10 -6.83 -0.03 4.94 16 4 N -0.42 -10.22 2.60 -119.05 -0.31 -10.53 16 5 C -0.30 -7.90 9.46 -15.00 -0.14 -8.05 16 6 H 0.11 2.98 7.22 -52.48 -0.38 2.60 16 7 C 0.03 0.74 5.36 -17.45 -0.09 0.65 16 8 N -0.86 -21.44 7.99 55.50 0.44 -21.00 16 9 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.48 11.09 5.85 -12.39 -0.07 11.02 16 14 O -0.57 -14.80 15.97 5.29 0.08 -14.71 16 15 C -0.16 -3.02 4.97 -104.82 -0.52 -3.55 16 16 C 0.04 0.72 7.17 -38.85 -0.28 0.44 16 17 C -0.75 -10.34 5.98 -39.50 -0.24 -10.58 16 18 S 2.71 31.49 6.29 -107.50 -0.68 30.81 16 19 N -1.25 -8.86 9.52 60.35 0.57 -8.29 16 20 O -0.96 -14.24 17.35 -57.17 -0.99 -15.23 16 21 O -0.96 -13.20 17.30 -57.17 -0.99 -14.19 16 22 C 0.20 2.76 10.68 -17.46 -0.19 2.57 16 23 N -0.50 -8.04 10.26 -9.12 -0.09 -8.13 16 24 C 0.22 3.92 6.82 -82.15 -0.56 3.36 16 25 C -0.11 -1.81 9.55 36.01 0.34 -1.47 16 26 H 0.20 3.49 7.80 -54.10 -0.42 3.06 16 27 H 0.06 1.17 4.20 -51.93 -0.22 0.95 16 28 H 0.13 3.04 6.35 -51.93 -0.33 2.71 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.16 2.45 7.02 -52.49 -0.37 2.08 16 31 H 0.42 2.21 8.96 -34.47 -0.31 1.90 16 32 H 0.42 2.08 8.96 -34.47 -0.31 1.77 16 33 H 0.17 1.82 7.62 -52.49 -0.40 1.42 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.70 6.72 -51.93 -0.35 1.35 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -33.85 328.79 -6.71 -40.56 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.06 Total: 9.66 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.62 Total: -8.58 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.61 Total: -47.95 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.90 Total: -44.13 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 31.49 SS G_CDS: -0.68 Total: 30.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.85 -6.71 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491751847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.141 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds