Wall clock time and date at job start Fri Apr 10 2020 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47422 * 334.27686 * 3 2 1 5 5 C 1.36871 * 119.99622 * 83.29689 * 4 3 2 6 6 H 1.08006 * 119.99817 * 166.18733 * 5 4 3 7 7 C 1.39047 * 120.00600 * 346.18630 * 5 4 3 8 8 N 1.31361 * 119.99612 * 359.70437 * 7 5 4 9 9 Si 1.86797 * 120.00381 * 179.70011 * 7 5 4 10 10 H 1.48503 * 109.47269 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47225 * 210.00378 * 9 7 5 12 12 H 1.48505 * 109.46917 * 330.00247 * 9 7 5 13 13 C 1.34776 * 119.99840 * 263.29996 * 4 3 2 14 14 O 1.21590 * 119.99709 * 184.37906 * 13 4 3 15 15 C 1.47720 * 120.00099 * 4.38356 * 13 4 3 16 16 C 1.40089 * 120.56531 * 300.74918 * 15 13 4 17 17 C 1.38331 * 118.28367 * 179.97438 * 16 15 13 18 18 S 1.76199 * 120.34589 * 179.97438 * 17 16 15 19 19 N 1.65601 * 107.21802 * 270.02465 * 18 17 16 20 20 O 1.42099 * 106.40131 * 23.56160 * 18 17 16 21 21 O 1.42095 * 106.40439 * 156.48531 * 18 17 16 22 22 C 1.38369 * 119.30947 * 0.02562 * 17 16 15 23 23 N 1.31937 * 121.09686 * 0.27133 * 22 17 16 24 24 C 1.31678 * 121.87954 * 359.43531 * 23 22 17 25 25 C 1.50704 * 119.71941 * 180.28887 * 24 23 22 26 26 H 4.40641 * 5.51338 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47103 * 214.27474 * 3 2 1 28 28 H 1.09003 * 109.47033 * 94.27813 * 3 2 1 29 29 H 0.97000 * 119.99642 * 180.02562 * 8 7 5 30 30 H 1.07994 * 120.85806 * 0.02562 * 16 15 13 31 31 H 0.97001 * 120.00248 * 150.00422 * 19 18 17 32 32 H 0.97001 * 120.00017 * 329.99809 * 19 18 17 33 33 H 1.07999 * 119.45144 * 179.97438 * 22 17 16 34 34 H 1.08996 * 109.47361 * 274.65196 * 25 24 23 35 35 H 1.08997 * 109.47233 * 34.65270 * 25 24 23 36 36 H 1.08998 * 109.47157 * 154.65600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2434 0.5995 5 6 3.2332 -2.3771 -0.1611 6 1 3.7934 -3.2254 0.2038 7 6 2.6117 -2.4369 -1.4035 8 7 1.9254 -1.4074 -1.8448 9 14 2.7527 -3.9811 -2.4452 10 1 1.6347 -4.9024 -2.1186 11 1 2.6892 -3.6157 -3.8831 12 1 4.0465 -4.6528 -2.1618 13 6 3.4880 -1.2716 1.8999 14 8 3.9684 -2.2812 2.3776 15 6 3.2913 -0.0759 2.7447 16 6 3.9116 1.1370 2.4181 17 6 3.6944 2.2269 3.2418 18 16 4.4483 3.7784 2.8826 19 7 5.9138 3.8015 3.6534 20 8 4.7277 3.7757 1.4894 21 8 3.6479 4.7690 3.5128 22 6 2.8799 2.0857 4.3514 23 7 2.3131 0.9293 4.6379 24 6 2.4844 -0.1354 3.8822 25 6 1.8083 -1.4306 4.2517 26 1 -1.0497 -0.0004 0.0000 27 1 3.0090 0.8501 0.5788 28 1 3.0093 0.0775 -1.0248 29 1 1.4916 -1.4493 -2.7113 30 1 4.5424 1.2192 1.5454 31 1 6.6508 4.3089 3.2789 32 1 6.0352 3.3077 4.4794 33 1 2.7091 2.9350 4.9963 34 1 2.4269 -1.9722 4.9673 35 1 0.8368 -1.2188 4.6984 36 1 1.6721 -2.0376 3.3567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491751847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:05 Heat of formation + Delta-G solvation = -18.296323 kcal Electronic energy + Delta-G solvation = -25424.956686 eV Core-core repulsion = 21617.022386 eV Total energy + Delta-G solvation = -3807.934300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95672 -40.06924 -38.30735 -37.31666 -36.98651 -34.62859 -34.19206 -34.03588 -33.34735 -33.12067 -29.42145 -28.36492 -27.09592 -25.26947 -23.84328 -22.03176 -20.46134 -19.88178 -19.30265 -18.56275 -18.40768 -18.25515 -17.83333 -17.59638 -16.91460 -16.39503 -16.22393 -16.02423 -15.66200 -15.53618 -14.82159 -14.79107 -14.27442 -14.07735 -13.72232 -13.60419 -13.33298 -13.26144 -13.24328 -13.21769 -13.12237 -12.93934 -12.77939 -12.55520 -12.16594 -11.51524 -11.44947 -11.30320 -11.13997 -10.92297 -10.64589 -10.55584 -10.31134 -9.97336 -8.31595 -6.03180 -0.81089 -0.57055 -0.25865 1.31857 1.40524 1.52350 1.70274 1.93459 2.11764 2.26160 2.27811 2.39013 2.67070 2.84057 3.02523 3.04927 3.32345 3.41059 3.55930 3.76439 3.93213 4.02946 4.22127 4.37224 4.45405 4.51875 4.56658 4.79417 4.93194 5.03501 5.26649 5.28441 5.36529 5.38189 5.89047 6.30990 6.36025 6.51726 6.99445 7.10372 7.24679 7.77056 8.57129 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.004557 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.090139 B = 6142.568174 C = 6678.572756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.134 4.134 3 C 0.226 3.774 4 N -0.433 5.433 5 C -0.341 4.341 6 H 0.088 0.912 7 C 0.001 3.999 8 N -0.874 5.874 9 Si 0.997 3.003 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.610 6.610 15 C -0.185 4.185 16 C 0.042 3.958 17 C -0.738 4.738 18 S 2.744 3.256 19 N -1.228 6.228 20 O -0.988 6.988 21 O -0.974 6.974 22 C 0.208 3.792 23 N -0.498 5.498 24 C 0.210 3.790 25 C -0.105 4.105 26 H 0.231 0.769 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.275 0.725 30 H 0.160 0.840 31 H 0.433 0.567 32 H 0.431 0.569 33 H 0.213 0.787 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 10.534 9.348 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.136 4.136 3 C 0.104 3.896 4 N -0.149 5.149 5 C -0.468 4.468 6 H 0.106 0.894 7 C -0.202 4.202 8 N -0.511 5.511 9 Si 0.820 3.180 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.193 1.193 13 C 0.269 3.731 14 O -0.498 6.498 15 C -0.192 4.192 16 C 0.016 3.984 17 C -0.824 4.824 18 S 2.827 3.173 19 N -0.909 5.909 20 O -0.977 6.977 21 O -0.963 6.963 22 C 0.048 3.952 23 N -0.208 5.208 24 C 0.074 3.926 25 C -0.162 4.162 26 H 0.248 0.752 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.267 0.733 32 H 0.261 0.739 33 H 0.229 0.771 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.923 10.629 9.450 14.520 hybrid contribution 0.543 -1.606 -1.162 2.055 sum 3.466 9.023 8.288 12.732 Atomic orbital electron populations 1.25046 0.96275 1.02006 1.04807 1.23228 0.94788 0.98692 0.96936 1.18780 0.85235 0.85093 1.00517 1.43850 1.53704 1.10050 1.07263 1.19776 1.33005 0.94304 0.99727 0.89364 1.26125 0.94355 1.01556 0.98162 1.70036 1.30994 1.29883 1.20229 0.84872 0.78707 0.77236 0.77177 1.20287 1.19426 1.19327 1.17979 0.85586 0.87807 0.81741 1.90599 1.50922 1.35005 1.73268 1.20972 1.03368 0.95522 0.99302 1.21588 0.91785 0.89574 0.95498 1.31759 1.19751 1.22581 1.08346 1.00413 0.72925 0.71608 0.72354 1.52682 1.30935 1.67126 1.40125 1.93586 1.84722 1.86464 1.32960 1.93596 1.69774 1.55593 1.77310 1.23337 0.85316 0.95520 0.91066 1.67754 1.23309 0.99355 1.30361 1.21837 0.88278 0.95352 0.87152 1.20826 1.01532 0.91093 1.02723 0.75202 0.90404 0.86967 0.91398 0.82213 0.73340 0.73901 0.77065 0.88240 0.87971 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.04 19.24 74.32 1.43 -9.61 16 2 C -0.13 -6.25 11.00 31.12 0.34 -5.91 16 3 C 0.23 10.46 5.10 84.57 0.43 10.89 16 4 N -0.43 -21.96 2.60 -648.84 -1.69 -23.65 16 5 C -0.34 -18.51 9.46 84.10 0.80 -17.71 16 6 H 0.09 5.05 7.22 -2.91 -0.02 5.03 16 7 C 0.00 0.04 5.36 84.96 0.45 0.49 16 8 N -0.87 -43.98 7.99 21.68 0.17 -43.80 16 9 Si 1.00 41.06 29.55 68.60 2.03 43.08 16 10 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 C 0.48 23.27 5.85 86.75 0.51 23.78 16 14 O -0.61 -33.10 15.97 -4.00 -0.06 -33.16 16 15 C -0.19 -7.29 4.97 -20.00 -0.10 -7.39 16 16 C 0.04 1.38 7.17 22.74 0.16 1.54 16 17 C -0.74 -18.76 5.98 22.32 0.13 -18.62 16 18 S 2.74 56.32 6.29 -56.49 -0.36 55.96 16 19 N -1.23 -13.40 9.52 37.02 0.35 -13.05 16 20 O -0.99 -27.65 17.35 -128.00 -2.22 -29.87 16 21 O -0.97 -23.52 17.30 -128.00 -2.21 -25.73 16 22 C 0.21 5.12 10.68 84.71 0.90 6.02 16 23 N -0.50 -15.08 10.26 -182.78 -1.88 -16.95 16 24 C 0.21 7.47 6.82 42.91 0.29 7.77 16 25 C -0.10 -3.51 9.55 71.24 0.68 -2.83 16 26 H 0.23 7.62 7.80 -4.43 -0.03 7.58 16 27 H 0.08 3.19 4.20 -2.38 -0.01 3.18 16 28 H 0.11 5.49 6.35 -2.39 -0.02 5.48 16 29 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 30 H 0.16 5.01 7.02 -2.91 -0.02 4.98 16 31 H 0.43 3.13 8.96 -96.74 -0.87 2.26 16 32 H 0.43 2.70 8.96 -96.74 -0.87 1.84 16 33 H 0.21 3.48 7.62 -2.91 -0.02 3.46 16 34 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.10 2.85 8.14 -2.39 -0.02 2.84 16 36 H 0.06 2.25 6.72 -2.39 -0.02 2.24 16 Total: -1.00 -74.85 328.79 -0.39 -75.24 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.56 Total: 23.51 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 6.04 Total: -11.58 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -3.04 Total: -97.45 kcal Atomic # 8 Polarization: -84.26 SS G_CDS: -4.50 Total: -88.76 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 56.32 SS G_CDS: -0.36 Total: 55.96 kcal Total: -74.85 -0.39 -75.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491751847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.940 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds