Wall clock time and date at job start Fri Apr 10 2020 18:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00339 * 2 1 4 4 C 1.50697 * 109.46834 * 293.95741 * 3 2 1 5 5 H 1.07999 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99821 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00095 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00049 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47155 * 59.99783 * 8 6 4 10 10 H 1.48498 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47218 * 299.99458 * 8 6 4 12 12 C 1.46906 * 110.99632 * 123.95291 * 2 1 3 13 13 C 1.52994 * 109.47260 * 66.04923 * 12 2 1 14 14 H 1.09007 * 109.46952 * 304.99904 * 13 12 2 15 15 O 1.42902 * 109.47250 * 64.99343 * 13 12 2 16 16 C 1.53001 * 109.47509 * 184.99754 * 13 12 2 17 17 N 1.46896 * 109.47502 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00243 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47360 * 180.02562 * 18 17 16 20 20 H 1.08992 * 109.47288 * 59.99688 * 19 18 17 21 21 O 1.42904 * 109.46849 * 299.99402 * 19 18 17 22 22 C 1.52996 * 109.47036 * 179.97438 * 19 18 17 23 23 C 1.50702 * 109.47203 * 184.99844 * 22 19 18 24 24 C 1.38234 * 119.99895 * 269.72772 * 23 22 19 25 25 C 1.38240 * 120.00062 * 180.32314 * 24 23 22 26 26 C 1.38235 * 119.99708 * 359.94741 * 25 24 23 27 27 C 1.38234 * 120.00204 * 0.02562 * 26 25 24 28 28 C 1.38230 * 119.99885 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46963 * 296.04847 * 1 2 3 30 30 H 1.09003 * 109.46661 * 56.04517 * 1 2 3 31 31 H 1.08995 * 109.47435 * 176.04778 * 1 2 3 32 32 H 1.09007 * 109.46941 * 53.95183 * 3 2 1 33 33 H 1.08996 * 109.46983 * 173.95224 * 3 2 1 34 34 H 0.97001 * 120.00277 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47255 * 306.04070 * 12 2 1 36 36 H 1.09003 * 109.46772 * 186.04667 * 12 2 1 37 37 H 0.96699 * 113.99477 * 60.00569 * 15 13 12 38 38 H 1.09006 * 109.46464 * 59.99583 * 16 13 12 39 39 H 1.08997 * 109.46717 * 300.00326 * 16 13 12 40 40 H 1.00897 * 110.99667 * 56.04270 * 17 16 13 41 41 H 1.09006 * 109.47360 * 59.99805 * 18 17 16 42 42 H 1.09005 * 109.47254 * 300.00415 * 18 17 16 43 43 H 0.96691 * 114.00051 * 300.00536 * 21 19 18 44 44 H 1.09003 * 109.47252 * 65.00022 * 22 19 18 45 45 H 1.09001 * 109.47630 * 305.00077 * 22 19 18 46 46 H 1.08001 * 120.00279 * 0.27436 * 24 23 22 47 47 H 1.07997 * 119.99852 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99766 * 180.02562 * 26 25 24 49 49 H 1.07992 * 119.99701 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0487 6 6 2.0277 3.3491 -1.5289 7 7 2.7130 4.0014 -0.6154 8 14 1.5839 4.1864 -3.1386 9 1 0.1067 4.2237 -3.2864 10 1 2.1160 5.5728 -3.1386 11 1 2.1756 3.4287 -4.2704 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2955 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2132 17 7 1.7199 -4.4376 2.0529 18 6 2.1263 -5.2166 3.2301 19 6 1.7466 -6.6846 3.0261 20 1 2.2531 -7.0714 2.1419 21 8 0.3325 -6.7908 2.8498 22 6 2.1705 -7.4960 4.2520 23 6 1.9087 -8.9588 4.0013 24 6 0.6911 -9.5127 4.3499 25 6 0.4534 -10.8560 4.1260 26 6 1.4329 -11.6450 3.5526 27 6 2.6503 -11.0910 3.2035 28 6 2.8884 -9.7480 3.4283 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5611 1.9274 0.8309 33 1 3.0798 1.3443 0.1083 34 1 2.9876 4.9175 -0.7774 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1757 37 1 3.2601 -2.7167 -0.1358 38 1 1.5632 -2.6179 3.0906 39 1 3.1481 -2.9236 2.3403 40 1 2.1251 -4.8169 1.2103 41 1 1.6200 -4.8294 4.1144 42 1 3.2050 -5.1359 3.3645 43 1 -0.1830 -6.4642 3.5998 44 1 1.5986 -7.1682 5.1202 45 1 3.2335 -7.3439 4.4387 46 1 -0.0742 -8.8963 4.7978 47 1 -0.4977 -11.2888 4.3987 48 1 1.2471 -12.6944 3.3773 49 1 3.4156 -11.7075 2.7559 50 1 3.8396 -9.3151 3.1559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518534618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:13 Heat of formation + Delta-G solvation = -77.811513 kcal Electronic energy + Delta-G solvation = -26234.259887 eV Core-core repulsion = 22453.917139 eV Total energy + Delta-G solvation = -3780.342748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83081 -38.52956 -37.71180 -35.77621 -34.59063 -33.18039 -32.51130 -31.20069 -30.52127 -28.98571 -27.14098 -26.42653 -24.92001 -23.18891 -22.89875 -22.15181 -21.43644 -21.10157 -20.14853 -17.35018 -16.97065 -16.49424 -16.31335 -15.95504 -15.89289 -15.38110 -15.14352 -14.93289 -14.83620 -14.67293 -14.22776 -14.01761 -13.71856 -13.52594 -13.41360 -13.03148 -12.87758 -12.49320 -12.43143 -12.25399 -11.93338 -11.83026 -11.50909 -11.31470 -11.30171 -11.18150 -11.08940 -10.86198 -10.75453 -10.65493 -10.38539 -10.24431 -9.98863 -9.59974 -9.22446 -9.12220 -8.95213 -8.52275 -8.41793 -7.17603 -6.01226 -4.02178 1.03260 1.09907 3.35742 3.39010 3.42027 3.43065 3.78528 4.21747 4.31512 4.44555 4.50115 4.64632 4.67793 4.69604 4.80341 4.82858 4.87967 4.94201 5.05570 5.18993 5.20190 5.28360 5.29132 5.32601 5.36436 5.37691 5.53311 5.65774 5.68694 5.71806 5.74754 5.78595 6.07367 6.14378 6.20378 6.22700 6.29334 6.35288 6.43566 6.68941 6.80989 6.82164 7.24460 7.28652 7.34291 7.49956 7.81859 7.97119 8.11735 8.22531 8.57409 9.05674 9.61968 11.09697 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.001606 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.793172 B =17427.050751 C =17464.046762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.674 5.674 18 C 0.026 3.974 19 C 0.118 3.882 20 H 0.096 0.904 21 O -0.541 6.541 22 C -0.115 4.115 23 C -0.074 4.074 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.120 4.120 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.365 0.635 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.349 0.651 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.370 0.630 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -28.539 13.951 31.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.307 5.307 18 C -0.104 4.104 19 C 0.058 3.942 20 H 0.114 0.886 21 O -0.345 6.345 22 C -0.153 4.153 23 C -0.074 4.074 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.138 4.138 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.169 0.831 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.216 0.784 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.007 -28.845 12.998 31.654 hybrid contribution 1.059 1.373 0.715 1.875 sum 0.052 -27.472 13.712 30.704 Atomic orbital electron populations 1.22263 0.88930 0.99698 1.00389 1.62027 1.06890 1.17375 1.39093 1.19739 0.95215 0.81665 0.96615 1.21143 1.34738 0.96881 1.01697 0.91817 1.24993 0.95311 0.97339 0.97034 1.69949 1.38486 1.11479 1.34159 0.86539 0.78714 0.78237 0.83789 1.20274 1.21405 1.20129 1.22710 1.00317 0.93933 0.93476 1.21996 0.98355 0.90627 0.83595 0.87780 1.86626 1.22701 1.83817 1.41733 1.22698 0.98329 0.89124 1.00081 1.60239 1.64234 1.01658 1.04533 1.22711 0.98435 0.94293 0.94985 1.21848 0.82973 0.92156 0.97253 0.88591 1.86656 1.16001 1.86171 1.45707 1.21349 1.02891 0.91937 0.99102 1.19691 0.94197 0.94967 0.98531 1.21001 0.96339 0.94970 0.99891 1.21155 0.99155 0.94136 0.99337 1.21147 0.93935 0.99865 0.99489 1.21124 0.97321 0.95250 1.00114 1.21046 0.99065 0.94004 0.99673 0.97331 0.90691 0.93320 0.99320 0.95443 0.92929 0.95384 0.91380 0.78882 0.90501 0.95189 0.83144 0.90826 0.94656 0.78358 0.90448 0.90043 0.86213 0.86182 0.86287 0.86190 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.64 4.70 -244.37 -1.15 -12.79 16 3 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.49 8.46 -34.44 -0.29 -14.78 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.43 16 13 C 0.11 1.66 3.19 -26.73 -0.09 1.57 16 14 H 0.10 1.66 6.34 -51.92 -0.33 1.34 16 15 O -0.55 -8.35 12.62 -35.23 -0.44 -8.80 16 16 C 0.03 0.31 5.39 -3.83 -0.02 0.29 16 17 N -0.67 -7.17 6.37 -113.78 -0.72 -7.90 16 18 C 0.03 0.20 5.35 -3.83 -0.02 0.18 16 19 C 0.12 0.90 3.16 -26.73 -0.08 0.81 16 20 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 21 O -0.54 -5.05 12.71 -35.23 -0.45 -5.50 16 22 C -0.11 -0.70 5.03 -27.88 -0.14 -0.84 16 23 C -0.07 -0.57 4.96 -104.62 -0.52 -1.09 16 24 C -0.10 -0.80 9.42 -39.58 -0.37 -1.18 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 26 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.89 10.05 -39.59 -0.40 -1.28 16 28 C -0.12 -0.92 9.70 -39.59 -0.38 -1.30 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 31 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 37 H 0.37 4.47 9.04 45.56 0.41 4.88 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 3.89 8.12 -39.29 -0.32 3.57 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.37 2.34 9.04 45.56 0.41 2.75 16 44 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -33.32 407.80 -10.78 -44.10 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.17 Total: 6.04 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.70 Total: -11.98 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.14 Total: -46.94 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.89 Total: -14.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.32 -10.78 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518534618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.709 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds