Wall clock time and date at job start Fri Apr 10 2020 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00339 * 2 1 4 4 C 1.50697 * 109.46834 * 293.95741 * 3 2 1 5 5 H 1.07999 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99821 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00095 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00049 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47155 * 59.99783 * 8 6 4 10 10 H 1.48498 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47218 * 299.99458 * 8 6 4 12 12 C 1.46906 * 110.99632 * 123.95291 * 2 1 3 13 13 C 1.52994 * 109.47260 * 66.04923 * 12 2 1 14 14 H 1.09007 * 109.46952 * 304.99904 * 13 12 2 15 15 O 1.42902 * 109.47250 * 64.99343 * 13 12 2 16 16 C 1.53001 * 109.47509 * 184.99754 * 13 12 2 17 17 N 1.46896 * 109.47502 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00243 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47360 * 180.02562 * 18 17 16 20 20 H 1.08992 * 109.47288 * 59.99688 * 19 18 17 21 21 O 1.42904 * 109.46849 * 299.99402 * 19 18 17 22 22 C 1.52996 * 109.47036 * 179.97438 * 19 18 17 23 23 C 1.50702 * 109.47203 * 184.99844 * 22 19 18 24 24 C 1.38234 * 119.99895 * 269.72772 * 23 22 19 25 25 C 1.38240 * 120.00062 * 180.32314 * 24 23 22 26 26 C 1.38235 * 119.99708 * 359.94741 * 25 24 23 27 27 C 1.38234 * 120.00204 * 0.02562 * 26 25 24 28 28 C 1.38230 * 119.99885 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46963 * 296.04847 * 1 2 3 30 30 H 1.09003 * 109.46661 * 56.04517 * 1 2 3 31 31 H 1.08995 * 109.47435 * 176.04778 * 1 2 3 32 32 H 1.09007 * 109.46941 * 53.95183 * 3 2 1 33 33 H 1.08996 * 109.46983 * 173.95224 * 3 2 1 34 34 H 0.97001 * 120.00277 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47255 * 306.04070 * 12 2 1 36 36 H 1.09003 * 109.46772 * 186.04667 * 12 2 1 37 37 H 0.96699 * 113.99477 * 60.00569 * 15 13 12 38 38 H 1.09006 * 109.46464 * 59.99583 * 16 13 12 39 39 H 1.08997 * 109.46717 * 300.00326 * 16 13 12 40 40 H 1.00897 * 110.99667 * 56.04270 * 17 16 13 41 41 H 1.09006 * 109.47360 * 59.99805 * 18 17 16 42 42 H 1.09005 * 109.47254 * 300.00415 * 18 17 16 43 43 H 0.96691 * 114.00051 * 300.00536 * 21 19 18 44 44 H 1.09003 * 109.47252 * 65.00022 * 22 19 18 45 45 H 1.09001 * 109.47630 * 305.00077 * 22 19 18 46 46 H 1.08001 * 120.00279 * 0.27436 * 24 23 22 47 47 H 1.07997 * 119.99852 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99766 * 180.02562 * 26 25 24 49 49 H 1.07992 * 119.99701 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0487 6 6 2.0277 3.3491 -1.5289 7 7 2.7130 4.0014 -0.6154 8 14 1.5839 4.1864 -3.1386 9 1 0.1067 4.2237 -3.2864 10 1 2.1160 5.5728 -3.1386 11 1 2.1756 3.4287 -4.2704 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2955 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2132 17 7 1.7199 -4.4376 2.0529 18 6 2.1263 -5.2166 3.2301 19 6 1.7466 -6.6846 3.0261 20 1 2.2531 -7.0714 2.1419 21 8 0.3325 -6.7908 2.8498 22 6 2.1705 -7.4960 4.2520 23 6 1.9087 -8.9588 4.0013 24 6 0.6911 -9.5127 4.3499 25 6 0.4534 -10.8560 4.1260 26 6 1.4329 -11.6450 3.5526 27 6 2.6503 -11.0910 3.2035 28 6 2.8884 -9.7480 3.4283 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5611 1.9274 0.8309 33 1 3.0798 1.3443 0.1083 34 1 2.9876 4.9175 -0.7774 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1757 37 1 3.2601 -2.7167 -0.1358 38 1 1.5632 -2.6179 3.0906 39 1 3.1481 -2.9236 2.3403 40 1 2.1251 -4.8169 1.2103 41 1 1.6200 -4.8294 4.1144 42 1 3.2050 -5.1359 3.3645 43 1 -0.1830 -6.4642 3.5998 44 1 1.5986 -7.1682 5.1202 45 1 3.2335 -7.3439 4.4387 46 1 -0.0742 -8.8963 4.7978 47 1 -0.4977 -11.2888 4.3987 48 1 1.2471 -12.6944 3.3773 49 1 3.4156 -11.7075 2.7559 50 1 3.8396 -9.3151 3.1559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518534618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:12 Heat of formation + Delta-G solvation = -104.576751 kcal Electronic energy + Delta-G solvation = -26235.420515 eV Core-core repulsion = 22453.917139 eV Total energy + Delta-G solvation = -3781.503376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.36954 -39.64518 -38.54925 -37.25877 -35.52839 -34.62570 -33.73027 -31.72311 -31.56588 -30.02537 -28.94563 -27.62677 -26.19537 -24.54143 -23.42447 -22.81113 -22.61062 -21.81544 -21.75520 -18.57207 -18.00715 -17.62038 -17.25787 -16.98101 -16.84972 -16.61287 -16.07548 -15.89357 -15.82802 -15.64012 -15.50888 -15.37410 -14.80816 -14.55621 -14.20709 -14.07428 -13.80173 -13.64971 -13.48402 -13.24012 -13.21197 -12.90156 -12.75575 -12.59504 -12.55463 -12.49962 -12.39091 -12.04068 -12.00222 -11.79369 -11.74744 -11.62726 -11.43728 -11.03644 -10.63493 -10.61629 -9.76363 -9.50326 -9.30462 -8.96296 -8.20990 -6.30975 0.49641 0.55969 1.41073 1.44318 1.52312 2.40198 2.81274 2.99897 3.11374 3.39087 3.67049 3.69840 3.76567 3.99513 4.01572 4.06861 4.17719 4.20584 4.25285 4.28884 4.33105 4.42540 4.43046 4.51761 4.58054 4.68577 4.69296 4.71721 4.73724 4.79204 4.81685 4.90220 5.06116 5.13561 5.15984 5.17391 5.22713 5.25103 5.32118 5.62025 5.64279 5.67623 5.76286 6.01802 6.06719 6.18673 6.31836 6.42693 6.63705 6.84672 6.95999 6.99175 7.38720 8.89669 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.001606 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.793172 B =17427.050751 C =17464.046762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.092 0.908 15 O -0.561 6.561 16 C 0.040 3.960 17 N -0.685 5.685 18 C 0.030 3.970 19 C 0.125 3.875 20 H 0.082 0.918 21 O -0.563 6.563 22 C -0.106 4.106 23 C -0.086 4.086 24 C -0.118 4.118 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.135 4.135 29 H 0.012 0.988 30 H 0.054 0.946 31 H 0.075 0.925 32 H -0.039 1.039 33 H 0.005 0.995 34 H 0.265 0.735 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.379 0.621 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.345 0.655 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.381 0.619 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -29.496 14.110 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.104 4.104 13 C 0.068 3.932 14 H 0.109 0.891 15 O -0.367 6.367 16 C -0.090 4.090 17 N -0.317 5.317 18 C -0.100 4.100 19 C 0.065 3.935 20 H 0.100 0.900 21 O -0.369 6.369 22 C -0.144 4.144 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.153 4.153 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.093 0.907 32 H -0.021 1.021 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.226 0.774 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.153 0.847 49 H 0.152 0.848 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.157 -29.828 13.178 32.630 hybrid contribution 1.108 1.596 0.702 2.066 sum -0.049 -28.232 13.880 31.460 Atomic orbital electron populations 1.22223 0.87912 1.01007 0.99655 1.61940 1.07924 1.14903 1.41706 1.19396 0.93657 0.83922 0.94904 1.21451 1.34970 0.97578 1.02450 0.92158 1.25902 0.94966 0.97983 1.00724 1.70069 1.39285 1.11901 1.36180 0.85433 0.78809 0.77176 0.79176 1.19317 1.20659 1.19431 1.22828 1.00214 0.95316 0.92044 1.21797 0.97626 0.88841 0.84964 0.89060 1.86586 1.24024 1.83700 1.42364 1.22485 0.98980 0.89289 0.98225 1.60228 1.64684 1.01391 1.05387 1.22732 0.99176 0.93961 0.94092 1.21753 0.82218 0.92102 0.97397 0.89971 1.86619 1.16980 1.86462 1.46863 1.21284 1.03735 0.90699 0.98686 1.19923 0.94262 0.95818 0.98555 1.21253 0.96792 0.95385 1.00189 1.21442 0.99925 0.94357 0.99384 1.21437 0.93981 1.00818 0.99402 1.21414 0.97876 0.95577 1.00168 1.21314 0.99730 0.94359 0.99854 0.96981 0.92684 0.90689 1.02090 0.97726 0.92663 0.94856 0.91336 0.77364 0.89898 0.94045 0.83585 0.89928 0.93553 0.77019 0.89189 0.88960 0.85199 0.84831 0.84747 0.84753 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -23.86 4.70 -927.06 -4.36 -28.22 16 3 C 0.21 11.26 4.72 85.56 0.40 11.67 16 4 C -0.53 -30.56 8.46 25.60 0.22 -30.34 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.13 5.46 84.65 0.46 0.59 16 7 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.03 0.86 4.60 86.30 0.40 1.26 16 13 C 0.13 3.53 3.19 30.59 0.10 3.63 16 14 H 0.09 2.79 6.34 -2.38 -0.02 2.77 16 15 O -0.56 -16.50 12.62 -148.98 -1.88 -18.38 16 16 C 0.04 0.83 5.39 86.30 0.47 1.30 16 17 N -0.68 -13.27 6.37 -513.89 -3.27 -16.54 16 18 C 0.03 0.41 5.35 86.30 0.46 0.87 16 19 C 0.13 1.72 3.16 30.59 0.10 1.81 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 21 O -0.56 -9.79 12.71 -148.98 -1.89 -11.68 16 22 C -0.11 -1.10 5.03 29.85 0.15 -0.95 16 23 C -0.09 -1.22 4.96 -19.87 -0.10 -1.32 16 24 C -0.12 -1.72 9.42 22.27 0.21 -1.51 16 25 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 26 C -0.14 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 28 C -0.13 -1.94 9.70 22.27 0.22 -1.73 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 2.41 6.76 -2.39 -0.02 2.39 16 31 H 0.07 2.61 6.37 -2.39 -0.02 2.59 16 32 H -0.04 -2.26 8.12 -2.38 -0.02 -2.28 16 33 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.03 1.11 8.12 -2.39 -0.02 1.10 16 36 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 37 H 0.38 8.78 9.04 -74.06 -0.67 8.11 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.35 7.17 8.12 -89.70 -0.73 6.44 16 41 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 42 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.38 4.25 9.04 -74.06 -0.67 3.58 16 44 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 45 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 46 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.13 1.39 8.06 -2.91 -0.02 1.36 16 48 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 49 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -71.42 407.80 -5.31 -76.74 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.13 Total: 24.35 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.92 Total: -16.93 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -7.35 Total: -101.07 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -3.77 Total: -30.06 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.42 -5.31 -76.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518534618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.840 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds