Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21805 * 120.00002 * 0.02562 * 14 13 3 16 16 C 1.41629 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.38006 * 126.00931 * 179.97438 * 16 14 13 18 18 C 1.39658 * 106.74512 * 180.02562 * 17 16 14 19 19 C 1.36520 * 107.18960 * 359.97438 * 18 17 16 20 20 S 1.76201 * 125.61330 * 179.97438 * 19 18 17 21 21 C 1.81002 * 100.00107 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47500 * 59.99901 * 21 20 19 23 23 F 1.39899 * 109.46881 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46864 * 299.99656 * 21 20 19 25 25 O 1.34161 * 108.77570 * 359.73725 * 19 18 17 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.07998 * 126.62552 * 359.97438 * 17 16 14 34 34 H 1.07994 * 126.40056 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3426 2.6326 -0.4300 16 6 0.0606 3.2981 -2.5768 17 6 -1.1480 3.9146 -2.8296 18 6 -1.0866 4.3994 -4.1379 19 6 0.1414 4.0678 -4.6338 20 16 0.7314 4.4462 -6.2504 21 6 2.3811 3.7062 -6.1641 22 9 2.2648 2.3359 -5.9077 23 9 3.0428 3.8988 -7.3816 24 9 3.1110 4.3128 -5.1361 25 8 0.8269 3.4110 -3.6859 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 2.2718 2.1232 -1.9978 33 1 -1.9807 4.0040 -2.1477 34 1 -1.8647 4.9368 -4.6594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521396303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = -155.263427 kcal Electronic energy + Delta-G solvation = -25381.831474 eV Core-core repulsion = 20993.808343 eV Total energy + Delta-G solvation = -4388.023131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.059 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.61035 -48.27127 -48.14042 -42.79222 -39.06230 -35.27350 -33.41948 -32.46885 -31.28670 -29.91765 -27.16390 -26.97242 -24.09545 -22.82517 -22.16483 -20.42816 -19.93531 -19.50195 -19.20617 -19.03262 -18.56122 -17.40277 -16.68068 -16.02950 -15.44917 -15.04708 -15.00468 -14.56704 -14.53237 -14.46527 -14.34645 -14.26037 -14.26012 -13.69316 -13.23309 -13.17001 -12.85504 -12.66303 -12.16262 -11.66857 -11.59604 -11.28686 -11.04342 -10.86097 -10.71342 -10.39614 -10.25410 -9.95929 -9.72305 -9.49035 -9.12034 -8.54917 -8.21637 -7.90718 -6.15978 -4.25623 -0.49163 0.46865 0.76342 2.05497 2.65907 2.95315 3.24745 3.29818 3.31471 3.41332 3.45672 3.67139 3.97511 4.34540 4.58157 5.04558 5.15815 5.23919 5.53014 5.66622 6.06942 6.34521 6.39921 6.43076 6.59525 6.98769 7.12577 7.22309 7.31794 7.55227 7.65900 7.82637 8.10895 8.47833 8.65643 8.89737 9.41049 10.89395 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.004251 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.916091 B = 6585.210501 C = 8061.020072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.690 5.690 14 C 0.577 3.423 15 O -0.523 6.523 16 C -0.029 4.029 17 C -0.121 4.121 18 C -0.151 4.151 19 C -0.054 4.054 20 S 0.075 5.925 21 C 0.445 3.555 22 F -0.154 7.154 23 F -0.151 7.151 24 F -0.154 7.154 25 O -0.147 6.147 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.393 0.607 33 H 0.172 0.828 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 7.776 -17.716 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.336 5.336 14 C 0.361 3.639 15 O -0.404 6.404 16 C -0.086 4.086 17 C -0.143 4.143 18 C -0.177 4.177 19 C -0.217 4.217 20 S 0.307 5.693 21 C 0.283 3.717 22 F -0.136 7.136 23 F -0.133 7.133 24 F -0.135 7.135 25 O -0.043 6.043 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.226 0.774 33 H 0.189 0.811 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.836 8.045 -17.831 20.722 hybrid contribution 1.984 -0.665 0.589 2.174 sum -4.852 7.380 -17.242 19.373 Atomic orbital electron populations 1.21856 0.98276 0.98321 1.01167 1.21949 0.92674 0.99494 1.02577 1.18931 0.94599 0.89373 0.80421 0.92793 1.21163 0.90457 1.39417 1.06487 0.92075 1.24859 0.98698 0.94643 0.95273 1.69875 1.35289 1.37390 1.09298 0.86498 0.84708 0.78385 0.77489 1.20140 1.21045 1.20125 1.46608 1.13892 1.54064 1.19056 1.15419 0.84004 0.80077 0.84360 1.90908 1.51644 1.60536 1.37298 1.22248 0.92236 1.06565 0.87534 1.22162 0.97810 0.98355 0.95936 1.21478 0.95771 1.04887 0.95549 1.23951 0.96547 1.07125 0.94106 1.86892 1.06108 1.70115 1.06233 1.22741 0.92369 0.80018 0.76525 1.93395 1.95859 1.30622 1.93718 1.93278 1.81771 1.94859 1.43351 1.93403 1.79333 1.82348 1.58455 1.84381 1.40605 1.58993 1.20343 0.92962 0.95576 0.94457 0.87967 0.94866 0.92414 0.77407 0.81068 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.35 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.69 -14.71 5.01 -57.82 -0.29 -15.00 16 14 C 0.58 11.62 6.16 -14.97 -0.09 11.53 16 15 O -0.52 -11.78 13.92 5.10 0.07 -11.71 16 16 C -0.03 -0.48 6.96 -38.37 -0.27 -0.75 16 17 C -0.12 -1.61 10.57 -39.14 -0.41 -2.03 16 18 C -0.15 -1.63 10.82 -39.67 -0.43 -2.06 16 19 C -0.05 -0.66 7.08 30.11 0.21 -0.45 16 20 S 0.08 0.70 22.31 -107.50 -2.40 -1.69 16 21 C 0.45 4.99 3.11 101.05 0.31 5.31 16 22 F -0.15 -1.96 16.79 2.25 0.04 -1.92 16 23 F -0.15 -1.54 17.35 2.25 0.04 -1.50 16 24 F -0.15 -1.98 16.77 2.25 0.04 -1.94 16 25 O -0.15 -2.23 8.96 3.33 0.03 -2.20 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.40 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 7.75 8.19 -40.82 -0.33 7.42 16 33 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -28.68 321.84 -6.04 -34.72 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.97 Total: 5.13 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.05 Total: -0.60 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.34 Total: -38.73 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.10 Total: -13.91 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.11 Total: -5.36 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.40 Total: -1.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.68 -6.04 -34.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521396303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.539 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds