Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21805 * 120.00002 * 0.02562 * 14 13 3 16 16 C 1.41629 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.38006 * 126.00931 * 179.97438 * 16 14 13 18 18 C 1.39658 * 106.74512 * 180.02562 * 17 16 14 19 19 C 1.36520 * 107.18960 * 359.97438 * 18 17 16 20 20 S 1.76201 * 125.61330 * 179.97438 * 19 18 17 21 21 C 1.81002 * 100.00107 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47500 * 59.99901 * 21 20 19 23 23 F 1.39899 * 109.46881 * 180.02562 * 21 20 19 24 24 F 1.39906 * 109.46864 * 299.99656 * 21 20 19 25 25 O 1.34161 * 108.77570 * 359.73725 * 19 18 17 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.07998 * 126.62552 * 359.97438 * 17 16 14 34 34 H 1.07994 * 126.40056 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3426 2.6326 -0.4300 16 6 0.0606 3.2981 -2.5768 17 6 -1.1480 3.9146 -2.8296 18 6 -1.0866 4.3994 -4.1379 19 6 0.1414 4.0678 -4.6338 20 16 0.7314 4.4462 -6.2504 21 6 2.3811 3.7062 -6.1641 22 9 2.2648 2.3359 -5.9077 23 9 3.0428 3.8988 -7.3816 24 9 3.1110 4.3128 -5.1361 25 8 0.8269 3.4110 -3.6859 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 2.2718 2.1232 -1.9978 33 1 -1.9807 4.0040 -2.1477 34 1 -1.8647 4.9368 -4.6594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521396303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = -172.709670 kcal Electronic energy + Delta-G solvation = -25382.588000 eV Core-core repulsion = 20993.808343 eV Total energy + Delta-G solvation = -4388.779656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.059 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.50719 -49.14404 -49.08703 -43.86884 -40.69112 -37.10209 -34.64251 -34.18504 -33.06767 -31.20878 -28.96859 -27.94724 -25.65723 -24.48938 -23.21875 -21.95519 -21.26099 -20.81177 -20.21453 -19.94670 -19.79519 -18.69631 -17.85350 -17.74394 -17.28796 -16.30223 -16.14235 -15.94557 -15.90957 -15.46506 -15.40828 -15.19078 -15.17783 -15.09505 -14.69103 -14.35508 -14.23340 -13.92539 -13.72447 -13.53463 -13.19523 -12.96447 -12.69496 -12.54138 -12.22912 -12.11288 -11.65635 -11.61471 -11.19528 -11.11243 -10.97491 -10.56948 -9.82032 -9.03517 -8.19558 -6.36910 -1.33765 -0.44606 -0.39460 1.05223 1.42685 1.43975 1.51981 1.76709 1.87562 2.19622 2.32514 2.49891 2.51904 2.62112 3.09802 3.64590 3.85235 4.19643 4.41704 4.47131 4.54736 4.69215 4.73280 5.01808 5.07944 5.22169 5.35742 5.40811 5.44312 5.54766 5.74526 5.84897 6.11203 6.66590 6.76403 7.18191 7.36750 8.85625 Molecular weight = 323.06amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.004251 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.916091 B = 6585.210501 C = 8061.020072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.064 0.936 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.268 1.268 13 N -0.696 5.696 14 C 0.581 3.419 15 O -0.557 6.557 16 C -0.078 4.078 17 C -0.096 4.096 18 C -0.138 4.138 19 C -0.061 4.061 20 S 0.150 5.850 21 C 0.431 3.569 22 F -0.166 7.166 23 F -0.146 7.146 24 F -0.167 7.167 25 O -0.162 6.162 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.267 0.733 32 H 0.400 0.600 33 H 0.185 0.815 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 8.821 -20.171 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.592 4.592 6 H 0.083 0.917 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.192 1.192 13 N -0.343 5.343 14 C 0.369 3.631 15 O -0.440 6.440 16 C -0.134 4.134 17 C -0.117 4.117 18 C -0.164 4.164 19 C -0.224 4.224 20 S 0.381 5.619 21 C 0.269 3.731 22 F -0.148 7.148 23 F -0.127 7.127 24 F -0.149 7.149 25 O -0.059 6.059 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.202 0.798 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.349 9.102 -20.323 23.449 hybrid contribution 2.067 -0.883 1.187 2.542 sum -5.283 8.219 -19.135 21.485 Atomic orbital electron populations 1.21693 0.96617 0.99513 1.00400 1.21796 0.94099 0.98728 1.01423 1.18520 0.93889 0.89486 0.80724 0.97217 1.21477 0.91333 1.39560 1.06861 0.91743 1.25687 1.03188 0.94166 0.94866 1.70012 1.37075 1.37925 1.09723 0.85469 0.79215 0.78434 0.77664 1.19800 1.20651 1.19249 1.46372 1.14950 1.54896 1.18058 1.15704 0.82880 0.79137 0.85386 1.90872 1.52293 1.61802 1.39055 1.21546 0.94039 1.10340 0.87486 1.22505 0.96511 0.95674 0.97052 1.21931 0.96088 1.04119 0.94295 1.24794 0.97195 1.05499 0.94923 1.86733 1.03236 1.68748 1.03146 1.23182 0.93716 0.79737 0.76425 1.93376 1.95984 1.31640 1.93820 1.93290 1.81907 1.94760 1.42762 1.93381 1.79919 1.82457 1.59142 1.84343 1.41078 1.59950 1.20522 0.94813 0.93252 0.94072 0.90437 0.94430 0.92364 0.76623 0.79816 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.44 2.24 44.24 0.10 14.54 16 4 H 0.01 0.60 7.58 -2.38 -0.02 0.58 16 5 C -0.55 -30.03 8.73 25.60 0.22 -29.80 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 N -0.70 -30.76 5.01 -455.01 -2.28 -33.04 16 14 C 0.58 24.06 6.16 85.08 0.52 24.58 16 15 O -0.56 -26.00 13.92 -4.68 -0.07 -26.06 16 16 C -0.08 -2.54 6.96 23.05 0.16 -2.38 16 17 C -0.10 -2.35 10.57 22.56 0.24 -2.11 16 18 C -0.14 -2.47 10.82 22.21 0.24 -2.23 16 19 C -0.06 -1.32 7.08 67.42 0.48 -0.84 16 20 S 0.15 2.31 22.31 -56.49 -1.26 1.05 16 21 C 0.43 8.93 3.11 113.37 0.35 9.29 16 22 F -0.17 -4.05 16.79 44.97 0.75 -3.30 16 23 F -0.15 -2.70 17.35 44.97 0.78 -1.92 16 24 F -0.17 -4.14 16.77 44.97 0.75 -3.39 16 25 O -0.16 -4.74 8.96 -11.01 -0.10 -4.84 16 26 H 0.03 1.60 7.84 -2.39 -0.02 1.58 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.78 5.65 -2.38 -0.01 1.77 16 29 H 0.08 4.26 5.95 -2.39 -0.01 4.24 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 32 H 0.40 16.30 8.19 -92.71 -0.76 15.54 16 33 H 0.18 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -64.43 321.84 4.82 -59.61 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.42 Total: 16.91 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 3.54 Total: 1.80 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.04 Total: -84.50 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.16 Total: -30.90 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.29 Total: -8.60 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.26 Total: 1.05 kcal Total: -64.43 4.82 -59.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521396303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.096 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds