Wall clock time and date at job start Fri Apr 10 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46957 * 111.00327 * 2 1 4 4 C 1.53051 * 109.36683 * 183.19204 * 3 2 1 5 5 N 1.46959 * 109.36198 * 301.59913 * 4 3 2 6 6 C 1.46896 * 110.99981 * 183.18700 * 5 4 3 7 7 C 1.50701 * 109.47361 * 169.82777 * 6 5 4 8 8 O 1.21284 * 119.99756 * 353.73946 * 7 6 5 9 9 N 1.34777 * 120.00110 * 173.73807 * 7 6 5 10 10 C 1.46504 * 120.00022 * 179.72584 * 9 7 6 11 11 C 1.50702 * 109.47172 * 270.27893 * 10 9 7 12 12 H 1.08001 * 119.99885 * 359.97438 * 11 10 9 13 13 C 1.37868 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00339 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47090 * 59.99843 * 15 13 11 17 17 H 1.48498 * 109.47122 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46724 * 299.99572 * 15 13 11 19 19 C 1.46498 * 120.00293 * 0.02562 * 9 7 6 20 20 C 1.53001 * 109.46914 * 269.72682 * 19 9 7 21 21 C 1.47199 * 109.47179 * 179.97438 * 20 19 9 22 22 N 8.80468 * 170.48904 * 247.33667 * 2 1 3 23 23 C 1.46958 * 110.88424 * 59.32087 * 5 4 3 24 24 C 1.46954 * 111.00316 * 123.80245 * 2 1 3 25 25 C 1.52998 * 109.48798 * 56.83892 * 24 2 1 26 26 C 1.53002 * 109.48926 * 296.77744 * 24 2 1 27 27 H 1.09005 * 109.46957 * 296.20021 * 1 2 3 28 28 H 1.09001 * 109.47356 * 56.19561 * 1 2 3 29 29 H 1.08999 * 109.47211 * 176.20174 * 1 2 3 30 30 H 1.08999 * 109.48709 * 303.15859 * 3 2 1 31 31 H 1.09002 * 109.48824 * 63.19997 * 3 2 1 32 32 H 1.08996 * 109.49085 * 181.63307 * 4 3 2 33 33 H 1.08997 * 109.48852 * 61.56132 * 4 3 2 34 34 H 1.09000 * 109.47387 * 49.82969 * 6 5 4 35 35 H 1.09001 * 109.47578 * 289.83314 * 6 5 4 36 36 H 1.08999 * 109.46820 * 30.27411 * 10 9 7 37 37 H 1.08994 * 109.47156 * 150.27361 * 10 9 7 38 38 H 0.96995 * 120.00112 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46749 * 29.72100 * 19 9 7 40 40 H 1.08992 * 109.47351 * 149.72504 * 19 9 7 41 41 H 1.09005 * 109.46937 * 299.99302 * 20 19 9 42 42 H 1.08997 * 109.47706 * 59.99716 * 20 19 9 43 43 H 1.09003 * 109.48493 * 60.64045 * 23 5 4 44 44 H 1.08999 * 109.49055 * 180.71150 * 23 5 4 45 45 H 1.09000 * 109.47325 * 179.89211 * 25 24 2 46 46 H 1.09004 * 109.47526 * 299.89346 * 25 24 2 47 47 H 1.09005 * 109.47378 * 59.89791 * 25 24 2 48 48 H 1.09001 * 109.46833 * 300.10991 * 26 24 2 49 49 H 1.09000 * 109.47199 * 60.10255 * 26 24 2 50 50 H 1.08995 * 109.47257 * 180.10635 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0501 0.5658 1.0597 6 6 5.5191 0.5657 1.0596 7 6 6.0215 -0.0038 2.3613 8 8 5.2393 -0.2675 3.2499 9 7 7.3400 -0.2202 2.5379 10 6 7.8290 -0.7682 3.8056 11 6 8.1377 0.3607 4.7551 12 1 7.9852 1.3840 4.4451 13 6 8.6156 0.0871 6.0190 14 7 8.8017 -1.1590 6.3963 15 14 8.9988 1.4864 7.1958 16 1 7.7667 2.2779 7.4416 17 1 9.4944 0.9309 8.4807 18 1 10.0396 2.3626 6.6006 19 6 8.2849 0.0988 1.4648 20 6 8.4707 -1.1268 0.5680 21 6 9.4197 -0.8062 -0.5106 22 7 10.1526 -0.5606 -1.3425 23 6 3.5235 -0.8062 1.0597 24 6 1.9957 -0.7632 1.1400 25 6 1.4421 -2.1890 1.0992 26 6 1.5720 -0.0879 2.4459 27 1 -0.3633 0.4537 0.9221 28 1 -0.3634 0.5717 -0.8539 29 1 -0.3633 -1.0254 -0.0681 30 1 1.6013 1.9128 -0.8602 31 1 1.6935 1.8775 0.9172 32 1 3.9179 2.3447 -0.0513 33 1 3.8253 0.8478 -1.0107 34 1 5.8825 1.5869 0.9456 35 1 5.8824 -0.0437 0.2321 36 1 7.0650 -1.4114 4.2421 37 1 8.7335 -1.3491 3.6254 38 1 9.1383 -1.3514 7.2854 39 1 7.8958 0.9269 0.8724 40 1 9.2445 0.3811 1.8977 41 1 8.8599 -1.9549 1.1604 42 1 7.5111 -1.4092 0.1351 43 1 3.8253 -1.3116 0.1423 44 1 3.9178 -1.3471 1.9199 45 1 1.8344 -2.7554 1.9438 46 1 0.3540 -2.1581 1.1565 47 1 1.7435 -2.6693 0.1683 48 1 1.9658 0.9281 2.4739 49 1 0.4839 -0.0574 2.5028 50 1 1.9644 -0.6531 3.2912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559759064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:29 Heat of formation + Delta-G solvation = -6.183333 kcal Electronic energy + Delta-G solvation = -28749.281073 eV Core-core repulsion = 25004.337107 eV Total energy + Delta-G solvation = -3744.943966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31884 -40.26790 -37.98562 -36.85057 -36.34175 -34.82070 -33.85365 -32.14093 -30.94278 -29.28163 -28.18389 -28.00408 -26.78016 -25.27843 -24.71402 -23.92023 -22.41877 -19.88104 -19.26238 -18.77626 -18.31101 -17.90944 -17.24521 -16.90618 -16.67999 -16.28982 -16.11846 -15.69882 -15.59940 -15.28125 -15.18582 -14.86299 -14.58161 -14.33306 -14.15827 -14.08321 -13.63634 -13.53212 -13.38991 -13.26481 -13.17358 -12.96451 -12.92503 -12.75402 -12.71162 -12.60243 -12.49775 -12.35183 -12.14414 -12.05542 -12.00880 -11.84642 -11.71952 -11.60915 -11.25809 -10.56212 -10.40390 -9.42459 -9.25537 -9.05695 -8.15559 -6.27524 1.40606 1.43690 1.50109 1.70463 1.84435 1.98086 2.26191 2.45482 2.94353 3.01658 3.15321 3.20917 3.76917 3.85096 4.06144 4.07209 4.13131 4.13510 4.20843 4.32369 4.41557 4.46111 4.51028 4.58573 4.65219 4.70022 4.74244 4.76908 4.84683 4.85290 4.94437 4.95951 4.99307 5.06072 5.06963 5.09654 5.15033 5.22531 5.30769 5.37355 5.48619 5.64962 5.89830 5.98629 6.09911 6.16640 6.25615 6.28242 6.60813 6.80498 6.87987 7.38460 7.63179 8.90663 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003924 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.678353 B = 7134.310296 C = 8842.972761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.535 5.535 3 C 0.053 3.947 4 C 0.059 3.941 5 N -0.540 5.540 6 C 0.046 3.954 7 C 0.502 3.498 8 O -0.567 6.567 9 N -0.601 5.601 10 C 0.263 3.737 11 C -0.538 4.538 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.281 1.281 17 H -0.283 1.283 18 H -0.263 1.263 19 C 0.115 3.885 20 C -0.037 4.037 21 C 0.246 3.754 22 N -0.488 5.488 23 C 0.074 3.926 24 C 0.111 3.889 25 C -0.136 4.136 26 C -0.157 4.157 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.002 0.998 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 2.081 -16.559 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.075 4.075 4 C -0.068 4.068 5 N -0.265 5.265 6 C -0.085 4.085 7 C 0.290 3.710 8 O -0.445 6.445 9 N -0.333 5.333 10 C 0.142 3.858 11 C -0.577 4.577 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.207 1.207 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.010 4.010 20 C -0.078 4.078 21 C -0.071 4.071 22 N -0.166 5.166 23 C -0.054 4.054 24 C 0.021 3.979 25 C -0.194 4.194 26 C -0.216 4.216 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.020 0.980 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.505 2.199 -17.191 21.372 hybrid contribution 0.229 0.354 1.761 1.811 sum -12.276 2.553 -15.430 19.882 Atomic orbital electron populations 1.22491 0.86666 1.02957 1.00817 1.62463 1.08646 1.13693 1.41189 1.22236 0.94392 0.89549 1.01308 1.22244 0.94679 0.98810 0.91065 1.61676 1.05967 1.14930 1.43954 1.22060 0.88975 1.03597 0.93858 1.21115 0.81813 0.78112 0.89954 1.90659 1.55871 1.52234 1.45691 1.48103 1.06071 1.63464 1.15639 1.18732 0.93547 0.93135 0.80360 1.21737 1.42980 0.93753 0.99245 0.92930 1.25695 0.95581 0.97830 0.99607 1.70016 1.46648 1.19554 1.20410 0.85653 0.78452 0.79549 0.78268 1.20668 1.20799 1.18760 1.21487 0.95137 0.96246 0.88129 1.19823 0.96672 1.00985 0.90352 1.29115 0.92928 0.91891 0.93198 1.81233 1.11984 1.10232 1.13184 1.22138 0.93998 0.89133 1.00175 1.21006 0.93540 0.94575 0.88756 1.21845 1.01423 0.93923 1.02224 1.22174 1.00082 1.01428 0.97918 0.95685 0.90248 0.90467 0.88338 0.94863 0.88923 0.93090 0.86187 0.89359 0.97954 0.94997 0.92654 0.87645 0.89893 0.86268 0.84994 0.93956 0.91889 0.92775 0.91098 0.91399 0.92834 0.92399 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.81 127.69 1.12 1.41 16 2 N -0.54 -10.37 4.73 -872.13 -4.13 -14.50 16 3 C 0.05 0.97 5.24 86.31 0.45 1.42 16 4 C 0.06 1.11 5.61 86.31 0.48 1.59 16 5 N -0.54 -13.74 3.72 -900.29 -3.35 -17.09 16 6 C 0.05 1.09 3.91 85.56 0.33 1.42 16 7 C 0.50 17.92 7.23 87.66 0.63 18.56 16 8 O -0.57 -26.50 14.27 -3.04 -0.04 -26.55 16 9 N -0.60 -21.24 2.46 -826.15 -2.03 -23.27 16 10 C 0.26 12.67 5.16 85.63 0.44 13.11 16 11 C -0.54 -29.10 9.38 25.60 0.24 -28.86 16 12 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 13 C 0.01 0.66 5.46 84.65 0.46 1.12 16 14 N -0.93 -53.91 13.29 21.44 0.28 -53.62 16 15 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 C 0.11 2.75 5.08 86.38 0.44 3.19 16 20 C -0.04 -0.67 5.97 28.79 0.17 -0.50 16 21 C 0.25 5.29 15.43 89.45 1.38 6.67 16 22 N -0.49 -13.39 18.53 20.00 0.37 -13.02 16 23 C 0.07 1.94 3.98 86.31 0.34 2.29 16 24 C 0.11 2.58 0.68 3.53 0.00 2.58 16 25 C -0.14 -2.73 8.14 71.98 0.59 -2.15 16 26 C -0.16 -4.22 7.65 71.98 0.55 -3.67 16 27 H 0.02 0.41 6.39 -2.38 -0.02 0.40 16 28 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.08 1.09 6.25 -2.39 -0.01 1.07 16 30 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.03 0.71 6.34 -2.39 -0.02 0.70 16 32 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 2.39 7.60 -2.39 -0.02 2.37 16 35 H 0.09 1.53 6.86 -2.39 -0.02 1.51 16 36 H 0.00 0.13 7.43 -2.39 -0.02 0.11 16 37 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.11 1.89 6.60 -2.38 -0.02 1.87 16 40 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 41 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.13 1.74 7.15 -2.39 -0.02 1.72 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 2.12 6.09 -2.39 -0.01 2.10 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.21 6.36 -2.38 -0.02 1.19 16 47 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.05 1.61 5.94 -2.39 -0.01 1.59 16 49 H 0.06 1.33 6.48 -2.39 -0.02 1.32 16 50 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -72.93 390.54 1.70 -71.23 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.92 Total: 12.73 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 7.65 Total: 18.19 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -8.85 Total: -121.50 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.93 1.70 -71.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559759064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.047 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds