Wall clock time and date at job start Fri Apr 10 2020 18:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00248 * 2 1 4 4 C 1.50703 * 109.46753 * 66.04584 * 3 2 1 5 5 H 1.07995 * 120.00408 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99925 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00043 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00012 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47217 * 269.99702 * 8 6 4 10 10 H 1.48507 * 109.47024 * 29.99682 * 8 6 4 11 11 H 1.48499 * 109.47296 * 149.99415 * 8 6 4 12 12 C 1.46901 * 111.00048 * 236.04744 * 2 1 3 13 13 C 1.53001 * 109.47384 * 199.76858 * 12 2 1 14 14 H 1.09000 * 109.46760 * 302.15553 * 13 12 2 15 15 O 1.42895 * 109.47380 * 62.15613 * 13 12 2 16 16 C 1.53006 * 109.47183 * 182.16007 * 13 12 2 17 17 N 1.46900 * 109.47081 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00075 * 179.97438 * 17 16 13 19 19 H 1.09004 * 109.47051 * 35.00119 * 18 17 16 20 20 C 1.52996 * 109.47460 * 275.00217 * 18 17 16 21 21 C 1.52999 * 109.47301 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47296 * 59.99849 * 21 20 18 23 23 C 1.52996 * 109.47069 * 300.00293 * 22 21 20 24 24 F 1.39895 * 109.47351 * 180.02562 * 23 22 21 25 25 F 1.39904 * 109.46609 * 299.99718 * 23 22 21 26 26 C 1.52999 * 109.47301 * 59.99710 * 23 22 21 27 27 H 1.08997 * 109.47098 * 60.00549 * 26 23 22 28 28 O 1.42907 * 109.46883 * 180.02562 * 26 23 22 29 29 H 1.08998 * 109.47253 * 54.96442 * 1 2 3 30 30 H 1.09003 * 109.47101 * 174.96153 * 1 2 3 31 31 H 1.09001 * 109.47068 * 294.96135 * 1 2 3 32 32 H 1.08994 * 109.47236 * 306.04949 * 3 2 1 33 33 H 1.09000 * 109.47456 * 186.04834 * 3 2 1 34 34 H 0.97005 * 120.00577 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47046 * 319.77012 * 12 2 1 36 36 H 1.08996 * 109.47151 * 79.76734 * 12 2 1 37 37 H 0.96704 * 113.99860 * 60.00048 * 15 13 12 38 38 H 1.09001 * 109.46597 * 299.99909 * 16 13 12 39 39 H 1.09002 * 109.46997 * 59.99653 * 16 13 12 40 40 H 1.00896 * 110.99653 * 56.04253 * 17 16 13 41 41 H 1.09004 * 109.46908 * 299.99989 * 20 18 17 42 42 H 1.09005 * 109.47392 * 59.99641 * 20 18 17 43 43 H 1.09004 * 109.46966 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47098 * 299.99451 * 21 20 18 45 45 H 1.09004 * 109.47003 * 59.99925 * 22 21 20 46 46 H 1.09000 * 109.47043 * 179.97438 * 22 21 20 47 47 H 0.96698 * 114.00150 * 299.99811 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3490 1.5290 7 7 1.7144 3.9388 2.6619 8 14 3.0010 4.2757 0.2315 9 1 4.4533 4.0623 0.4558 10 1 2.6296 3.7759 -1.1167 11 1 2.6936 5.7256 0.3239 12 6 1.9955 -0.7660 -1.1376 13 6 3.4456 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6749 15 8 3.4926 -2.0097 0.2950 16 6 4.0110 -1.9161 -2.0637 17 7 5.4035 -2.2986 -1.7941 18 6 5.9802 -3.0240 -2.9337 19 1 5.5798 -2.6184 -3.8629 20 6 5.6213 -4.5076 -2.8284 21 6 6.2215 -5.2631 -4.0158 22 6 7.7432 -5.1045 -4.0047 23 6 8.1021 -3.6209 -4.1100 24 9 9.4935 -3.4759 -4.1005 25 9 7.5876 -3.1003 -5.3023 26 6 7.5019 -2.8655 -2.9227 27 1 7.9028 -3.2711 -1.9938 28 8 7.8367 -1.4797 -3.0214 29 1 -0.3634 0.5899 -0.8414 30 1 -0.3633 -1.0237 -0.0903 31 1 -0.3633 0.4337 0.9317 32 1 1.5612 1.9273 -0.8308 33 1 3.0798 1.3443 -0.1083 34 1 1.9890 4.8549 2.8240 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0380 37 1 2.9843 -2.8273 0.2040 38 1 3.4165 -2.8114 -2.2454 39 1 3.9751 -1.2716 -2.9421 40 1 5.4713 -2.8431 -0.9474 41 1 6.0217 -4.9132 -1.8993 42 1 4.5371 -4.6206 -2.8368 43 1 5.9661 -6.3201 -3.9405 44 1 5.8206 -4.8574 -4.9447 45 1 8.1440 -5.5102 -3.0758 46 1 8.1708 -5.6431 -4.8504 47 1 8.7875 -1.3037 -3.0204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565598090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:36 Heat of formation + Delta-G solvation = -228.321686 kcal Electronic energy + Delta-G solvation = -28682.910819 eV Core-core repulsion = 24341.811930 eV Total energy + Delta-G solvation = -4341.098889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08379 -48.09216 -40.18406 -39.21422 -37.35072 -36.78422 -35.20423 -34.59697 -31.63966 -30.22800 -30.13529 -29.25927 -26.67859 -24.94775 -23.76488 -23.11790 -22.70951 -21.65126 -21.24360 -19.06657 -18.94556 -18.50377 -17.78767 -17.45462 -17.17649 -17.01457 -16.45181 -16.37626 -15.97674 -15.80087 -15.40243 -15.22784 -15.00331 -14.73543 -14.51302 -14.42207 -14.33331 -14.15354 -14.06200 -13.91067 -13.68755 -13.55027 -13.22515 -13.04765 -12.73927 -12.59827 -12.50777 -12.40512 -12.24514 -12.08084 -11.87901 -11.86139 -11.67272 -11.59612 -11.45868 -10.97168 -10.78453 -10.71239 -9.29055 -8.95954 -8.29170 -6.31473 1.32357 1.34148 1.43504 2.32698 2.44750 2.84271 2.91705 3.03875 3.13126 3.21536 3.49251 3.56690 3.71018 3.88092 3.95234 4.00455 4.06344 4.15057 4.18501 4.20227 4.32869 4.42143 4.54424 4.59371 4.61465 4.64997 4.70921 4.79329 4.82633 4.83525 4.90519 5.00383 5.03579 5.06532 5.19490 5.22952 5.26298 5.55356 5.94998 6.02561 6.38411 6.46976 6.63664 6.65872 6.74667 7.08545 7.31800 8.87662 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002817 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.119213 B = 9936.213684 C =10932.625560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.173 3.827 4 C -0.513 4.513 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.943 3.057 9 H -0.268 1.268 10 H -0.253 1.253 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.123 3.877 14 H 0.065 0.935 15 O -0.558 6.558 16 C 0.046 3.954 17 N -0.684 5.684 18 C 0.097 3.903 19 H 0.074 0.926 20 C -0.146 4.146 21 C -0.114 4.114 22 C -0.155 4.155 23 C 0.250 3.750 24 F -0.209 7.209 25 F -0.208 7.208 26 C 0.082 3.918 27 H 0.097 0.903 28 O -0.558 6.558 29 H 0.015 0.985 30 H 0.086 0.914 31 H 0.043 0.957 32 H -0.016 1.016 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.035 0.965 37 H 0.380 0.620 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.353 0.647 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -24.715 -17.592 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.264 5.264 3 C 0.046 3.954 4 C -0.551 4.551 5 H 0.057 0.943 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.766 3.234 9 H -0.193 1.193 10 H -0.177 1.177 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.063 3.937 14 H 0.083 0.917 15 O -0.363 6.363 16 C -0.083 4.083 17 N -0.315 5.315 18 C -0.013 4.013 19 H 0.092 0.908 20 C -0.185 4.185 21 C -0.152 4.152 22 C -0.193 4.193 23 C 0.213 3.787 24 F -0.190 7.190 25 F -0.189 7.189 26 C 0.021 3.979 27 H 0.115 0.885 28 O -0.364 6.364 29 H 0.034 0.966 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.002 0.998 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.228 0.772 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.173 0.827 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.573 -23.593 -17.066 31.334 hybrid contribution 0.109 0.424 -1.102 1.186 sum 11.682 -23.169 -18.168 31.676 Atomic orbital electron populations 1.22201 0.87231 1.01161 0.99909 1.61722 1.08025 1.14412 1.42242 1.19942 0.94824 0.86128 0.94492 1.21269 1.34652 0.97390 1.01822 0.94336 1.25810 0.96988 0.98483 0.97592 1.70040 1.48705 1.13923 1.26192 0.85785 0.79452 0.77908 0.80235 1.19347 1.17725 1.20313 1.22864 0.97027 0.98938 0.91661 1.21725 0.93894 0.92899 0.85168 0.91729 1.86671 1.74487 1.35526 1.39654 1.22469 0.88693 0.99557 0.97616 1.60089 1.18372 1.47953 1.05135 1.21483 0.90994 0.93718 0.95128 0.90785 1.22336 1.02839 0.92982 1.00338 1.21487 0.92170 1.02905 0.98601 1.22615 0.99652 0.90049 1.07011 1.22386 0.74752 0.97895 0.83633 1.92983 1.32126 1.97050 1.96822 1.92980 1.86737 1.89075 1.50132 1.22888 0.97146 0.82576 0.95244 0.88492 1.86687 1.30063 1.23117 1.96538 0.96615 0.89574 0.93769 0.99811 0.96067 0.92425 0.88099 0.94637 0.77224 0.91935 0.91101 0.82699 0.89303 0.89465 0.87620 0.91573 0.86613 0.88318 0.76354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.31 127.69 1.19 2.80 16 2 N -0.54 -22.29 4.59 -927.06 -4.25 -26.54 16 3 C 0.17 8.67 3.62 85.56 0.31 8.98 16 4 C -0.51 -30.89 9.13 25.60 0.23 -30.66 16 5 H 0.04 2.57 7.34 -2.91 -0.02 2.55 16 6 C 0.01 0.51 5.47 84.66 0.46 0.97 16 7 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 8 Si 0.94 46.23 27.47 68.60 1.88 48.11 16 9 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.02 0.72 4.65 86.30 0.40 1.12 16 13 C 0.12 3.58 3.31 30.60 0.10 3.69 16 14 H 0.06 2.47 6.73 -2.39 -0.02 2.45 16 15 O -0.56 -16.11 12.58 -148.98 -1.87 -17.98 16 16 C 0.05 0.98 5.19 86.31 0.45 1.42 16 17 N -0.68 -14.31 6.12 -491.57 -3.01 -17.32 16 18 C 0.10 1.62 2.04 44.92 0.09 1.71 16 19 H 0.07 1.50 7.46 -2.38 -0.02 1.48 16 20 C -0.15 -1.31 5.17 30.59 0.16 -1.15 16 21 C -0.11 -0.82 5.80 30.59 0.18 -0.64 16 22 C -0.16 -1.34 5.45 30.59 0.17 -1.17 16 23 C 0.25 3.96 1.79 30.59 0.05 4.01 16 24 F -0.21 -3.75 16.68 44.97 0.75 -3.00 16 25 F -0.21 -4.42 15.96 44.97 0.72 -3.70 16 26 C 0.08 1.42 2.71 30.59 0.08 1.50 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 O -0.56 -12.86 13.13 -148.98 -1.96 -14.81 16 29 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16 30 H 0.09 2.47 7.85 -2.39 -0.02 2.45 16 31 H 0.04 1.92 7.01 -2.39 -0.02 1.90 16 32 H -0.02 -0.78 7.13 -2.39 -0.02 -0.80 16 33 H 0.02 1.08 6.03 -2.39 -0.01 1.07 16 34 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 35 H 0.10 2.28 7.75 -2.39 -0.02 2.26 16 36 H 0.04 1.07 8.00 -2.39 -0.02 1.05 16 37 H 0.38 7.20 9.05 -74.05 -0.67 6.53 16 38 H 0.06 0.92 7.44 -2.39 -0.02 0.90 16 39 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 40 H 0.35 6.79 7.86 -89.70 -0.71 6.08 16 41 H 0.09 0.59 8.13 -2.38 -0.02 0.57 16 42 H 0.09 0.68 7.45 -2.38 -0.02 0.67 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.64 7.80 -2.39 -0.02 0.62 16 45 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.39 6.42 8.73 -74.06 -0.65 5.77 16 Total: -1.00 -78.56 373.66 -4.64 -83.20 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -1.08 Total: 20.23 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 3.88 Total: -7.42 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -6.96 Total: -104.62 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -3.83 Total: -32.79 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.47 Total: -6.70 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Total: -78.56 -4.64 -83.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565598090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.126 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds