Wall clock time and date at job start Fri Apr 10 2020 18:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99772 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00103 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47097 * 90.00210 * 8 6 4 10 10 H 1.48503 * 109.47186 * 209.99572 * 8 6 4 11 11 H 1.48499 * 109.47341 * 330.00010 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.47132 * 179.97438 * 18 17 16 20 20 C 1.34853 * 126.65628 * 95.02914 * 19 18 17 21 21 N 1.34281 * 108.07484 * 179.97438 * 20 19 18 22 22 C 1.30098 * 109.21309 * 359.96460 * 21 20 19 23 23 N 1.35423 * 108.62235 * 359.81452 * 22 21 20 24 24 C 1.46482 * 124.81300 * 179.45970 * 23 22 21 25 25 C 1.53260 * 108.86511 * 343.44443 * 24 23 22 26 26 C 1.53146 * 109.49081 * 50.14498 * 25 24 23 27 27 C 1.51035 * 127.39079 * 180.02562 * 22 21 20 28 28 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 29 29 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 30 30 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 31 31 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 32 32 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 33 33 H 0.96997 * 120.00316 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 35 35 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 36 36 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 37 37 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 38 38 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 39 39 H 1.00903 * 111.00011 * 303.95191 * 17 16 13 40 40 H 1.08998 * 109.47006 * 300.00352 * 18 17 16 41 41 H 1.09003 * 109.46947 * 60.00060 * 18 17 16 42 42 H 1.08000 * 125.95975 * 359.96459 * 20 19 18 43 43 H 1.09002 * 109.74048 * 223.51526 * 24 23 22 44 44 H 1.08999 * 109.35645 * 103.15382 * 24 23 22 45 45 H 1.08998 * 109.47133 * 290.13086 * 25 24 23 46 46 H 1.09001 * 109.46405 * 170.15130 * 25 24 23 47 47 H 1.09000 * 109.50966 * 170.57504 * 26 25 24 48 48 H 1.08997 * 109.54996 * 50.45651 * 26 25 24 49 49 H 1.09006 * 109.71163 * 283.75121 * 27 22 21 50 50 H 1.08998 * 109.71739 * 44.34755 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 1.7146 3.9388 2.6620 8 14 3.0021 4.2752 0.2321 9 1 2.0662 4.9798 -0.6807 10 1 3.8889 5.2662 0.8930 11 1 3.8256 3.3162 -0.5472 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 6 1.7570 -6.6548 -3.0455 20 6 0.6649 -7.1936 -3.6248 21 7 0.5891 -8.4819 -3.2535 22 6 1.5893 -8.7611 -2.4698 23 7 2.3445 -7.6472 -2.3189 24 6 3.5543 -7.5620 -1.4974 25 6 3.5887 -8.7585 -0.5404 26 6 3.3551 -10.0504 -1.3289 27 6 1.9015 -10.0874 -1.8182 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3633 0.5739 0.8526 30 1 -0.3634 0.4513 -0.9232 31 1 3.0798 1.3443 -0.1083 32 1 1.5611 1.9274 -0.8308 33 1 1.9898 4.8546 2.8244 34 1 3.0796 -0.6611 -1.1758 35 1 1.5609 -0.3872 -2.0628 36 1 3.1652 -2.6772 0.2784 37 1 1.8158 -2.6057 -3.0860 38 1 3.2695 -3.0086 -2.1411 39 1 1.9996 -4.8410 -1.1734 40 1 1.8739 -4.8134 -4.1183 41 1 3.3280 -5.2165 -3.1741 42 1 -0.0279 -6.6788 -4.2739 43 1 3.5451 -6.6353 -0.9235 44 1 4.4320 -7.5852 -2.1433 45 1 2.8074 -8.6453 0.2112 46 1 4.5609 -8.8032 -0.0495 47 1 3.5442 -10.9093 -0.6849 48 1 4.0290 -10.0821 -2.1850 49 1 1.2324 -10.2483 -0.9728 50 1 1.7774 -10.8916 -2.5434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567727381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:45 Heat of formation + Delta-G solvation = 11.771946 kcal Electronic energy + Delta-G solvation = -27104.348822 eV Core-core repulsion = 23360.183455 eV Total energy + Delta-G solvation = -3744.165367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.60473 -38.50348 -37.03773 -36.30609 -35.22749 -33.45502 -32.48242 -30.84705 -30.02654 -29.08099 -27.67344 -26.43021 -25.08171 -24.10574 -23.02053 -22.39306 -21.39733 -20.92436 -20.13374 -19.18432 -17.19448 -16.90630 -16.46737 -16.35008 -16.06200 -15.33004 -15.06815 -14.95374 -14.84076 -14.65924 -14.45239 -14.15289 -14.14247 -13.99071 -13.52156 -13.07454 -13.02180 -12.68357 -12.50965 -12.34782 -12.26897 -12.07153 -11.67501 -11.62760 -11.59582 -11.47250 -11.28690 -10.99554 -10.77086 -10.70936 -10.32475 -10.13675 -9.94345 -9.79967 -9.63439 -9.25390 -8.76997 -8.59101 -8.38532 -7.36206 -6.05873 -4.03050 1.72728 2.44378 2.92822 3.25698 3.33340 3.34265 3.86368 3.93359 4.06758 4.13891 4.18128 4.40015 4.47364 4.52571 4.65626 4.67641 4.78964 4.83640 4.89518 5.04927 5.10915 5.16006 5.17560 5.21361 5.27342 5.30051 5.33570 5.37496 5.38876 5.52217 5.60473 5.61415 5.69283 5.91301 6.11425 6.14525 6.22393 6.28666 6.54944 6.67788 6.69848 6.83140 6.93734 6.98133 7.07826 7.57407 7.84931 7.88730 7.90671 8.06195 8.65393 9.03994 9.55513 11.07324 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.002022 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.356674 B =13841.240816 C =14154.473979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.106 0.894 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.678 5.678 18 C 0.138 3.862 19 C -0.021 4.021 20 C -0.007 4.007 21 N -0.490 5.490 22 C 0.207 3.793 23 N -0.451 5.451 24 C 0.102 3.898 25 C -0.135 4.135 26 C -0.125 4.125 27 C -0.034 4.034 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.026 0.974 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.366 0.634 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.346 0.654 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.169 0.831 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -27.436 -12.141 30.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.310 5.310 18 C 0.008 3.992 19 C -0.135 4.135 20 C -0.156 4.156 21 N -0.209 5.209 22 C -0.055 4.055 23 N -0.135 5.135 24 C -0.021 4.021 25 C -0.173 4.173 26 C -0.163 4.163 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.000 1.000 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.212 0.788 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.164 0.836 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.187 0.813 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.715 -27.975 -11.926 30.775 hybrid contribution 2.407 1.890 -1.168 3.276 sum 7.122 -26.085 -13.094 30.044 Atomic orbital electron populations 1.22298 0.88171 1.00194 1.00713 1.61860 1.07465 1.15940 1.39049 1.20205 0.95005 0.84185 0.97050 1.21041 1.35456 0.97165 1.00918 0.90033 1.24915 0.95844 0.97373 0.95338 1.69892 1.46874 1.13238 1.23886 0.86853 0.80610 0.80012 0.82149 1.20373 1.21141 1.19365 1.22755 1.00296 0.94212 0.93519 1.21978 0.99270 0.90656 0.82698 0.87621 1.86631 1.24737 1.84826 1.38611 1.22727 0.97535 0.89115 1.00834 1.60420 1.63578 1.01788 1.05225 1.20243 0.96339 0.86279 0.96341 1.20909 0.98707 0.91465 1.02452 1.22122 0.97949 0.90867 1.04701 1.70065 1.21128 1.15522 1.14145 1.23209 0.90580 0.90565 1.01163 1.45219 1.21772 1.09778 1.36745 1.21959 0.85725 1.00914 0.93455 1.21898 1.04153 0.93348 0.97879 1.21680 0.96099 0.98016 1.00515 1.20197 0.96688 0.90270 1.00086 0.93004 0.90114 0.97205 0.95635 1.00024 0.92669 0.91361 0.95108 0.78802 0.89980 0.94962 0.83558 0.88609 0.94899 0.81326 0.89384 0.89989 0.90290 0.89160 0.89870 0.91216 0.89235 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.14 60.06 0.55 1.23 16 2 N -0.52 -10.81 4.62 -244.37 -1.13 -11.94 16 3 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 4 C -0.51 -14.51 9.01 -34.44 -0.31 -14.82 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.17 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 8 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.02 0.35 4.62 -3.82 -0.02 0.33 16 13 C 0.11 1.52 3.08 -26.73 -0.08 1.44 16 14 H 0.11 1.57 6.55 -51.93 -0.34 1.23 16 15 O -0.54 -7.79 12.72 -35.23 -0.45 -8.23 16 16 C 0.03 0.28 5.36 -3.83 -0.02 0.26 16 17 N -0.68 -6.92 6.49 -115.06 -0.75 -7.66 16 18 C 0.14 1.21 5.99 -4.98 -0.03 1.18 16 19 C -0.02 -0.22 6.49 -81.80 -0.53 -0.75 16 20 C -0.01 -0.09 11.80 -17.68 -0.21 -0.30 16 21 N -0.49 -6.34 11.24 -10.62 -0.12 -6.46 16 22 C 0.21 2.15 7.65 -155.24 -1.19 0.96 16 23 N -0.45 -4.18 3.14 -109.19 -0.34 -4.52 16 24 C 0.10 0.61 6.77 -3.92 -0.03 0.59 16 25 C -0.14 -0.60 5.94 -26.52 -0.16 -0.75 16 26 C -0.13 -0.53 5.96 -26.44 -0.16 -0.69 16 27 C -0.03 -0.22 6.33 -27.50 -0.17 -0.39 16 28 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 29 H 0.08 1.78 6.76 -51.92 -0.35 1.43 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.62 6.99 -51.92 -0.36 0.26 16 32 H -0.02 -0.43 7.55 -51.93 -0.39 -0.83 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.37 4.11 9.04 45.56 0.41 4.52 16 37 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.35 3.68 8.21 -39.29 -0.32 3.35 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.26 8.13 -51.93 -0.42 -0.16 16 42 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -34.57 394.86 -11.19 -45.76 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.99 Total: 3.17 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.47 Total: -5.97 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -1.56 Total: -57.47 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.45 Total: -8.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.57 -11.19 -45.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567727381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.533 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds