Wall clock time and date at job start Fri Apr 10 2020 18:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99772 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00103 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.47097 * 90.00210 * 8 6 4 10 10 H 1.48503 * 109.47186 * 209.99572 * 8 6 4 11 11 H 1.48499 * 109.47341 * 330.00010 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.47132 * 179.97438 * 18 17 16 20 20 C 1.34853 * 126.65628 * 95.02914 * 19 18 17 21 21 N 1.34281 * 108.07484 * 179.97438 * 20 19 18 22 22 C 1.30098 * 109.21309 * 359.96460 * 21 20 19 23 23 N 1.35423 * 108.62235 * 359.81452 * 22 21 20 24 24 C 1.46482 * 124.81300 * 179.45970 * 23 22 21 25 25 C 1.53260 * 108.86511 * 343.44443 * 24 23 22 26 26 C 1.53146 * 109.49081 * 50.14498 * 25 24 23 27 27 C 1.51035 * 127.39079 * 180.02562 * 22 21 20 28 28 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 29 29 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 30 30 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 31 31 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 32 32 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 33 33 H 0.96997 * 120.00316 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 35 35 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 36 36 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 37 37 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 38 38 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 39 39 H 1.00903 * 111.00011 * 303.95191 * 17 16 13 40 40 H 1.08998 * 109.47006 * 300.00352 * 18 17 16 41 41 H 1.09003 * 109.46947 * 60.00060 * 18 17 16 42 42 H 1.08000 * 125.95975 * 359.96459 * 20 19 18 43 43 H 1.09002 * 109.74048 * 223.51526 * 24 23 22 44 44 H 1.08999 * 109.35645 * 103.15382 * 24 23 22 45 45 H 1.08998 * 109.47133 * 290.13086 * 25 24 23 46 46 H 1.09001 * 109.46405 * 170.15130 * 25 24 23 47 47 H 1.09000 * 109.50966 * 170.57504 * 26 25 24 48 48 H 1.08997 * 109.54996 * 50.45651 * 26 25 24 49 49 H 1.09006 * 109.71163 * 283.75121 * 27 22 21 50 50 H 1.08998 * 109.71739 * 44.34755 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 1.7146 3.9388 2.6620 8 14 3.0021 4.2752 0.2321 9 1 2.0662 4.9798 -0.6807 10 1 3.8889 5.2662 0.8930 11 1 3.8256 3.3162 -0.5472 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 6 1.7570 -6.6548 -3.0455 20 6 0.6649 -7.1936 -3.6248 21 7 0.5891 -8.4819 -3.2535 22 6 1.5893 -8.7611 -2.4698 23 7 2.3445 -7.6472 -2.3189 24 6 3.5543 -7.5620 -1.4974 25 6 3.5887 -8.7585 -0.5404 26 6 3.3551 -10.0504 -1.3289 27 6 1.9015 -10.0874 -1.8182 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3633 0.5739 0.8526 30 1 -0.3634 0.4513 -0.9232 31 1 3.0798 1.3443 -0.1083 32 1 1.5611 1.9274 -0.8308 33 1 1.9898 4.8546 2.8244 34 1 3.0796 -0.6611 -1.1758 35 1 1.5609 -0.3872 -2.0628 36 1 3.1652 -2.6772 0.2784 37 1 1.8158 -2.6057 -3.0860 38 1 3.2695 -3.0086 -2.1411 39 1 1.9996 -4.8410 -1.1734 40 1 1.8739 -4.8134 -4.1183 41 1 3.3280 -5.2165 -3.1741 42 1 -0.0279 -6.6788 -4.2739 43 1 3.5451 -6.6353 -0.9235 44 1 4.4320 -7.5852 -2.1433 45 1 2.8074 -8.6453 0.2112 46 1 4.5609 -8.8032 -0.0495 47 1 3.5442 -10.9093 -0.6849 48 1 4.0290 -10.0821 -2.1850 49 1 1.2324 -10.2483 -0.9728 50 1 1.7774 -10.8916 -2.5434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567727381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:45 Heat of formation + Delta-G solvation = -15.565200 kcal Electronic energy + Delta-G solvation = -27105.534249 eV Core-core repulsion = 23360.183455 eV Total energy + Delta-G solvation = -3745.350795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.31479 -39.65936 -37.67416 -37.44143 -36.28190 -34.60083 -34.10412 -31.82390 -30.74187 -30.20452 -29.24380 -27.57607 -26.15253 -24.90779 -24.14216 -22.95470 -22.56134 -21.84778 -21.61268 -19.75314 -19.03238 -17.90317 -17.32243 -17.19684 -16.99641 -16.62762 -16.21827 -15.98986 -15.79332 -15.57263 -15.41357 -15.10712 -15.01921 -14.89064 -14.56015 -14.43048 -14.13071 -13.82300 -13.67535 -13.39057 -13.24510 -13.08357 -12.81293 -12.73690 -12.57801 -12.47299 -12.29627 -12.05991 -11.98161 -11.86122 -11.81896 -11.60752 -11.50888 -10.96174 -10.79807 -10.77053 -10.50175 -9.50538 -9.15112 -8.97720 -8.28016 -6.31793 0.99043 1.34221 1.36118 1.46984 1.83128 2.11524 2.34242 2.93953 3.05076 3.37694 3.43320 3.61014 3.65587 3.69537 3.76920 3.88069 3.97892 4.09944 4.16749 4.24881 4.26297 4.36771 4.43447 4.47193 4.50556 4.53301 4.62845 4.64301 4.68138 4.75882 4.80321 4.82766 4.90047 4.94537 5.01722 5.02400 5.09438 5.10586 5.25801 5.26667 5.42622 5.53063 5.79122 5.92025 5.99752 6.27267 6.29565 6.34700 6.66705 6.75004 6.97032 7.13741 7.31594 8.88872 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.002022 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.356674 B =13841.240816 C =14154.473979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.003 3.997 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.245 1.245 12 C 0.022 3.978 13 C 0.124 3.876 14 H 0.088 0.912 15 O -0.563 6.563 16 C 0.041 3.959 17 N -0.688 5.688 18 C 0.145 3.855 19 C -0.022 4.022 20 C -0.038 4.038 21 N -0.532 5.532 22 C 0.197 3.803 23 N -0.450 5.450 24 C 0.094 3.906 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.036 4.036 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.021 0.979 31 H 0.033 0.967 32 H -0.015 1.015 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.380 0.620 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.342 0.658 40 H 0.103 0.897 41 H 0.050 0.950 42 H 0.172 0.828 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -28.297 -13.993 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.194 4.194 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.169 1.169 12 C -0.107 4.107 13 C 0.064 3.936 14 H 0.106 0.894 15 O -0.369 6.369 16 C -0.089 4.089 17 N -0.321 5.321 18 C 0.016 3.984 19 C -0.137 4.137 20 C -0.187 4.187 21 N -0.252 5.252 22 C -0.066 4.066 23 N -0.133 5.133 24 C -0.027 4.027 25 C -0.170 4.170 26 C -0.156 4.156 27 C -0.074 4.074 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.003 0.997 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.189 0.811 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.132 0.868 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.111 0.889 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.266 -28.867 -13.788 32.806 hybrid contribution 1.548 2.065 -0.504 2.629 sum 8.815 -26.803 -14.292 31.628 Atomic orbital electron populations 1.22187 0.87989 1.00917 0.99620 1.61735 1.07873 1.14410 1.42279 1.19961 0.95322 0.85876 0.94370 1.21285 1.34764 0.97528 1.01946 0.94811 1.25925 0.97126 0.98468 0.97872 1.70062 1.48617 1.13876 1.26481 0.85649 0.79140 0.78673 0.79026 1.19446 1.20715 1.16871 1.22877 1.00879 0.94893 0.92018 1.21813 0.98455 0.89540 0.83786 0.89417 1.86600 1.26130 1.84820 1.39370 1.22539 0.98463 0.88533 0.99348 1.60368 1.64228 1.01967 1.05492 1.20238 0.97167 0.85032 0.95986 1.21126 0.98276 0.92324 1.01994 1.22367 0.99190 0.91145 1.05976 1.70013 1.22936 1.16360 1.15861 1.23882 0.90077 0.92051 1.00546 1.45441 1.22323 1.09121 1.36434 1.22264 0.84802 1.01928 0.93718 1.21926 1.05114 0.92635 0.97280 1.21671 0.94208 0.98827 1.00881 1.20383 0.98510 0.88517 1.00033 0.90980 0.93742 0.96055 0.94920 0.99698 0.92454 0.90107 0.93858 0.77236 0.89089 0.93032 0.83905 0.87915 0.93236 0.81095 0.89047 0.88497 0.91276 0.86779 0.87724 0.91037 0.88928 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -21.95 4.62 -927.04 -4.28 -26.23 16 3 C 0.17 8.14 3.79 85.56 0.32 8.46 16 4 C -0.52 -30.22 9.01 25.60 0.23 -29.99 16 5 H 0.03 2.23 7.37 -2.91 -0.02 2.21 16 6 C 0.00 0.18 5.47 84.66 0.46 0.64 16 7 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 8 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 12 C 0.02 0.65 4.62 86.30 0.40 1.05 16 13 C 0.12 3.03 3.08 30.60 0.09 3.13 16 14 H 0.09 2.48 6.55 -2.39 -0.02 2.46 16 15 O -0.56 -15.12 12.72 -148.98 -1.90 -17.01 16 16 C 0.04 0.70 5.36 86.30 0.46 1.16 16 17 N -0.69 -12.53 6.49 -517.93 -3.36 -15.90 16 18 C 0.15 2.23 5.99 85.56 0.51 2.74 16 19 C -0.02 -0.43 6.49 41.08 0.27 -0.16 16 20 C -0.04 -0.93 11.80 83.54 0.99 0.06 16 21 N -0.53 -14.10 11.24 -187.52 -2.11 -16.21 16 22 C 0.20 4.03 7.65 138.23 1.06 5.09 16 23 N -0.45 -7.82 3.14 -499.36 -1.57 -9.39 16 24 C 0.09 0.92 6.77 86.47 0.59 1.50 16 25 C -0.13 -0.84 5.94 30.73 0.18 -0.66 16 26 C -0.12 -0.72 5.96 30.79 0.18 -0.54 16 27 C -0.04 -0.43 6.33 30.10 0.19 -0.24 16 28 H 0.07 2.50 6.47 -2.39 -0.02 2.49 16 29 H 0.04 2.04 6.76 -2.38 -0.02 2.02 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.03 1.51 6.99 -2.38 -0.02 1.49 16 32 H -0.01 -0.68 7.55 -2.39 -0.02 -0.70 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.08 2.16 7.93 -2.39 -0.02 2.14 16 35 H 0.04 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.38 7.65 9.04 -74.06 -0.67 6.98 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.34 6.62 8.21 -89.69 -0.74 5.88 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 0.61 8.13 -2.39 -0.02 0.59 16 42 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 43 H 0.09 0.84 8.07 -2.39 -0.02 0.83 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 46 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 49 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -77.55 394.86 -4.46 -82.01 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.53 Total: 21.75 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 7.10 Total: -4.97 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -11.02 Total: -127.32 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.90 Total: -17.01 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -77.55 -4.46 -82.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567727381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.444 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds