Wall clock time and date at job start Fri Apr 10 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47520 * 2 1 4 4 C 1.52995 * 109.47354 * 239.99555 * 2 1 3 5 5 H 1.09001 * 110.44114 * 168.85000 * 4 2 1 6 6 C 1.54812 * 110.48460 * 46.16424 * 4 2 1 7 7 C 1.54998 * 102.09157 * 220.44446 * 6 4 2 8 8 O 1.44381 * 103.49325 * 37.02107 * 7 6 4 9 9 C 1.43738 * 106.97548 * 319.94446 * 8 7 6 10 10 H 1.08997 * 109.87812 * 267.08604 * 9 8 7 11 11 C 1.50704 * 110.00703 * 146.00414 * 9 8 7 12 12 O 1.21277 * 119.99586 * 357.82003 * 11 9 8 13 13 N 1.34773 * 119.99906 * 177.81666 * 11 9 8 14 14 C 1.46497 * 119.99839 * 185.37208 * 13 11 9 15 15 C 1.52995 * 109.47278 * 180.02562 * 14 13 11 16 16 H 1.09000 * 115.51909 * 330.57991 * 15 14 13 17 17 C 1.53006 * 117.44621 * 185.16670 * 15 14 13 18 18 H 1.09005 * 119.53619 * 4.11858 * 17 15 14 19 19 C 1.54387 * 118.12539 * 159.21126 * 17 15 14 20 20 N 1.48143 * 104.61676 * 87.19271 * 19 17 15 21 21 C 1.36940 * 127.83772 * 140.41497 * 20 19 17 22 22 H 1.07999 * 120.00102 * 199.34946 * 21 20 19 23 23 C 1.38816 * 119.99648 * 19.35477 * 21 20 19 24 24 N 1.31615 * 120.00351 * 7.40295 * 23 21 20 25 25 Si 1.86804 * 119.99597 * 187.40327 * 23 21 20 26 26 H 1.48503 * 109.47249 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.46963 * 119.99674 * 25 23 21 28 28 H 1.48493 * 109.47023 * 239.99892 * 25 23 21 29 29 C 1.48146 * 104.32571 * 320.41313 * 20 19 17 30 30 C 1.53006 * 117.44458 * 116.00022 * 15 14 13 31 31 H 1.09000 * 119.53793 * 355.87854 * 30 15 14 32 32 H 1.08997 * 109.47158 * 168.01347 * 1 2 3 33 33 H 1.09008 * 109.46981 * 288.01358 * 1 2 3 34 34 H 1.08997 * 109.47102 * 48.01059 * 1 2 3 35 35 H 1.09010 * 109.47133 * 119.99573 * 2 1 3 36 36 H 1.09007 * 109.46815 * 304.96801 * 3 2 1 37 37 H 1.08999 * 109.47490 * 64.96117 * 3 2 1 38 38 H 1.08997 * 109.47425 * 184.97018 * 3 2 1 39 39 H 1.08993 * 110.91074 * 338.64078 * 6 4 2 40 40 H 1.09000 * 110.90558 * 102.24848 * 6 4 2 41 41 H 1.09008 * 110.61897 * 278.52355 * 7 6 4 42 42 H 1.09004 * 110.75387 * 155.59235 * 7 6 4 43 43 H 0.97007 * 120.00290 * 5.37554 * 13 11 9 44 44 H 1.09000 * 109.47336 * 300.00150 * 14 13 11 45 45 H 1.08997 * 109.47217 * 60.00083 * 14 13 11 46 46 H 1.09006 * 110.40495 * 205.97741 * 19 17 15 47 47 H 1.09001 * 110.40645 * 328.40935 * 19 17 15 48 48 H 0.96999 * 119.99815 * 180.02562 * 24 23 21 49 49 H 1.08995 * 110.40596 * 158.36829 * 29 20 19 50 50 H 1.08996 * 110.40767 * 280.68680 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 3.1117 -0.5627 -1.3694 6 6 1.2737 -0.2383 -2.5045 7 6 1.0681 -1.5598 -3.2879 8 8 0.8250 -2.5328 -2.2493 9 6 1.7232 -2.2274 -1.1695 10 1 2.6412 -2.8053 -1.2763 11 6 1.0691 -2.5443 0.1507 12 8 -0.0726 -2.9524 0.1792 13 7 1.7530 -2.3742 1.2995 14 6 1.1613 -2.7923 2.5728 15 6 2.1364 -2.4894 3.7122 16 1 3.1930 -2.5153 3.4454 17 6 1.7517 -2.9647 5.1148 18 1 0.8453 -3.5543 5.2526 19 6 2.8739 -3.1216 6.1634 20 7 3.0018 -1.7797 6.7778 21 6 3.2134 -1.4762 8.0963 22 1 2.9813 -0.4888 8.4671 23 6 3.7266 -2.4377 8.9560 24 7 4.1456 -3.5906 8.4792 25 14 3.8222 -2.0951 10.7899 26 1 3.2919 -0.7361 11.0680 27 1 3.0146 -3.1019 11.5242 28 1 5.2365 -2.1747 11.2352 29 6 2.8488 -0.8405 5.6423 30 6 1.6990 -1.4652 4.7613 31 1 0.7534 -0.9377 4.6358 32 1 -0.3633 -1.0052 -0.2134 33 1 -0.3633 0.3178 0.9774 34 1 -0.3633 0.6875 -0.7638 35 1 1.8934 -0.5138 0.8901 36 1 1.6059 1.9813 -0.8422 37 1 1.7512 1.9300 0.9311 38 1 3.1264 1.4437 -0.0890 39 1 0.3161 0.2038 -2.2296 40 1 1.8747 0.4656 -3.0802 41 1 1.9656 -1.8158 -3.8511 42 1 0.2076 -1.4849 -3.9528 43 1 2.6369 -1.9750 1.2834 44 1 0.2310 -2.2485 2.7372 45 1 0.9564 -3.8624 2.5443 46 1 2.5912 -3.8585 6.9152 47 1 3.8079 -3.4090 5.6804 48 1 4.5038 -4.2625 9.0801 49 1 2.5471 0.1435 6.0010 50 1 3.7794 -0.7702 5.0792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978171588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:13 Heat of formation + Delta-G solvation = -31.279411 kcal Electronic energy + Delta-G solvation = -28397.611074 eV Core-core repulsion = 24619.286108 eV Total energy + Delta-G solvation = -3778.324965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10268 -40.39171 -39.30894 -36.92209 -36.18222 -34.93194 -32.77417 -31.53972 -30.86180 -28.82267 -28.49159 -28.07789 -26.58772 -24.49031 -23.51690 -22.79570 -21.92714 -21.27874 -20.84442 -20.15156 -18.81049 -18.24231 -17.67575 -17.32805 -16.89590 -16.75624 -16.19239 -15.83305 -15.66530 -15.46813 -15.24709 -14.77989 -14.60069 -14.56168 -14.31183 -14.11194 -13.64260 -13.37072 -13.25367 -13.17134 -12.90606 -12.88514 -12.76098 -12.65669 -12.44249 -12.27429 -12.11476 -11.95138 -11.86545 -11.80688 -11.73717 -11.39382 -11.32405 -11.08715 -10.93987 -10.67466 -10.64909 -10.37330 -9.87097 -8.86540 -7.93461 -5.30857 1.46017 1.46759 1.57270 1.57567 1.89931 2.46967 2.74484 3.05994 3.26174 3.41123 3.58555 3.63993 3.71860 3.74808 3.88044 3.99080 4.15976 4.20444 4.27594 4.29646 4.32727 4.33593 4.38788 4.45936 4.57816 4.66786 4.73994 4.77128 4.80506 4.84967 4.87625 4.90703 4.93946 5.03585 5.09668 5.12831 5.19520 5.23908 5.32978 5.35096 5.44474 5.45559 5.47299 5.50038 5.54369 5.65165 5.83461 6.18587 6.52366 7.01083 7.21741 7.67949 8.47776 9.21123 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.002492 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.033098 B =11232.947847 C =11741.136730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.140 4.140 4 C -0.103 4.103 5 H 0.124 0.876 6 C -0.151 4.151 7 C 0.038 3.962 8 O -0.383 6.383 9 C 0.059 3.941 10 H 0.116 0.884 11 C 0.523 3.477 12 O -0.570 6.570 13 N -0.709 5.709 14 C 0.164 3.836 15 C -0.110 4.110 16 H 0.113 0.887 17 C -0.180 4.180 18 H 0.108 0.892 19 C 0.193 3.807 20 N -0.620 5.620 21 C -0.241 4.241 22 H 0.079 0.921 23 C -0.061 4.061 24 N -0.946 5.946 25 Si 0.978 3.022 26 H -0.264 1.264 27 H -0.292 1.292 28 H -0.290 1.290 29 C 0.150 3.850 30 C -0.156 4.156 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.417 0.583 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.005 0.995 48 H 0.250 0.750 49 H 0.053 0.947 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 8.704 -25.038 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.131 4.131 3 C -0.197 4.197 4 C -0.121 4.121 5 H 0.142 0.858 6 C -0.188 4.188 7 C -0.038 4.038 8 O -0.302 6.302 9 C -0.002 4.002 10 H 0.134 0.866 11 C 0.310 3.690 12 O -0.449 6.449 13 N -0.365 5.365 14 C 0.040 3.960 15 C -0.129 4.129 16 H 0.131 0.869 17 C -0.200 4.200 18 H 0.126 0.874 19 C 0.067 3.933 20 N -0.344 5.344 21 C -0.370 4.370 22 H 0.096 0.904 23 C -0.255 4.255 24 N -0.593 5.593 25 Si 0.806 3.194 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.217 1.217 29 C 0.025 3.975 30 C -0.175 4.175 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.023 0.977 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.161 8.159 -24.775 26.274 hybrid contribution 0.414 -0.108 1.388 1.452 sum -2.746 8.052 -23.387 24.886 Atomic orbital electron populations 1.22244 0.96434 1.02607 1.01057 1.21657 0.95261 0.98070 0.98111 1.21786 1.01682 0.94402 1.01822 1.22680 1.02931 0.90310 0.96224 0.85821 1.23364 1.01960 0.98196 0.95308 1.23862 1.02852 0.86726 0.90385 1.88973 1.60543 1.53647 1.27062 1.22921 0.93243 0.98652 0.85393 0.86614 1.20751 0.85987 0.76013 0.86206 1.90690 1.19371 1.46993 1.87867 1.46109 1.21770 1.63206 1.05436 1.20639 0.94928 0.99678 0.80722 1.22417 0.99832 1.02015 0.88640 0.86945 1.23839 1.01687 0.99267 0.95254 0.87381 1.20742 0.92447 0.88277 0.91802 1.45427 1.83911 1.02106 1.02953 1.19379 1.34960 0.98649 0.84002 0.90369 1.25794 0.99535 0.97202 1.02953 1.70094 1.46977 1.07561 1.34666 0.85023 0.76962 0.77811 0.79586 1.18871 1.21878 1.21686 1.21883 0.94461 0.93146 0.88012 1.24606 1.00732 0.91642 1.00532 0.85614 0.92628 0.93988 0.91873 0.89188 0.92214 0.93241 0.91113 0.90454 0.87360 0.89903 0.88328 0.74366 0.91729 0.91702 0.93736 0.97696 0.94120 0.92824 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 7.78 71.98 0.56 -2.77 16 2 C -0.11 -1.62 2.21 -10.80 -0.02 -1.65 16 3 C -0.14 -1.63 9.02 71.98 0.65 -0.98 16 4 C -0.10 -1.18 2.82 -9.80 -0.03 -1.21 16 5 H 0.12 0.74 8.11 -2.39 -0.02 0.72 16 6 C -0.15 -1.57 6.07 31.90 0.19 -1.38 16 7 C 0.04 0.48 7.72 72.67 0.56 1.04 16 8 O -0.38 -8.54 10.75 -130.33 -1.40 -9.94 16 9 C 0.06 1.03 3.63 30.22 0.11 1.14 16 10 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 11 C 0.52 12.48 4.48 87.66 0.39 12.87 16 12 O -0.57 -19.20 14.93 15.63 0.23 -18.97 16 13 N -0.71 -14.09 3.86 -463.08 -1.79 -15.88 16 14 C 0.16 4.00 5.96 86.38 0.51 4.52 16 15 C -0.11 -3.00 5.34 -10.79 -0.06 -3.06 16 16 H 0.11 2.94 8.04 -2.39 -0.02 2.92 16 17 C -0.18 -6.54 6.77 -9.93 -0.07 -6.61 16 18 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 19 C 0.19 9.32 5.63 86.53 0.49 9.81 16 20 N -0.62 -31.54 3.37 -681.31 -2.30 -33.84 16 21 C -0.24 -13.43 10.34 84.03 0.87 -12.57 16 22 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 23 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 24 N -0.95 -56.63 11.01 21.65 0.24 -56.39 16 25 Si 0.98 45.29 29.56 68.60 2.03 47.32 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 C 0.15 5.92 7.10 87.75 0.62 6.54 16 30 C -0.16 -4.97 7.02 -8.72 -0.06 -5.03 16 31 H 0.13 3.61 8.12 -2.39 -0.02 3.59 16 32 H 0.05 1.45 4.45 -2.39 -0.01 1.44 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 1.10 6.33 -2.39 -0.02 1.08 16 35 H 0.09 1.40 4.37 -2.38 -0.01 1.39 16 36 H 0.06 0.62 7.85 -2.38 -0.02 0.60 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 39 H 0.08 1.02 5.32 -2.39 -0.01 1.01 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.42 5.94 7.15 -92.70 -0.66 5.28 16 44 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 2.47 6.74 -2.38 -0.02 2.45 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 50 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.77 380.33 2.47 -71.30 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.27 Total: 18.69 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.18 Total: -2.29 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.85 Total: -106.11 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.17 Total: -28.91 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.77 2.47 -71.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978171588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.021 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds